Wall clock time and date at job start Mon Mar 30 2020 01:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47180 * 2 1 4 4 S 1.81400 * 109.47320 * 179.97438 * 3 2 1 5 5 O 1.42097 * 110.54163 * 68.37683 * 4 3 2 6 6 O 1.42094 * 110.54434 * 291.63006 * 4 3 2 7 7 N 1.65603 * 104.45139 * 180.02562 * 4 3 2 8 8 C 1.36904 * 120.00144 * 263.08946 * 7 4 3 9 9 H 1.08002 * 120.00219 * 49.80190 * 8 7 4 10 10 C 1.38819 * 120.00326 * 229.80278 * 8 7 4 11 11 N 1.31568 * 119.99637 * 17.69025 * 10 8 7 12 12 Si 1.86792 * 120.00219 * 197.69355 * 10 8 7 13 13 H 1.48505 * 109.47325 * 90.00094 * 12 10 8 14 14 H 1.48500 * 109.47179 * 210.00011 * 12 10 8 15 15 H 1.48505 * 109.47128 * 329.99998 * 12 10 8 16 16 C 1.38835 * 119.99664 * 83.09100 * 7 4 3 17 17 C 1.39230 * 119.71176 * 180.02562 * 16 7 4 18 18 C 1.38311 * 119.09160 * 180.02562 * 17 16 7 19 19 C 1.38884 * 118.50548 * 0.02562 * 18 17 16 20 20 C 1.38125 * 119.34025 * 0.24908 * 19 18 17 21 21 N 1.31898 * 120.86247 * 359.47666 * 20 19 18 22 22 H 1.09003 * 109.47205 * 59.99328 * 1 2 3 23 23 H 1.08994 * 109.47118 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47174 * 299.99920 * 1 2 3 25 25 H 1.09002 * 109.46924 * 240.00733 * 2 1 3 26 26 H 1.08996 * 109.47313 * 120.00299 * 2 1 3 27 27 H 1.09004 * 109.47045 * 60.00271 * 3 2 1 28 28 H 1.09003 * 109.47600 * 300.00430 * 3 2 1 29 29 H 0.96998 * 119.99741 * 180.02562 * 11 10 8 30 30 H 1.07995 * 120.44982 * 0.04103 * 17 16 7 31 31 H 1.07996 * 120.74220 * 180.02562 * 18 17 16 32 32 H 1.08004 * 120.32679 * 179.97438 * 19 18 17 33 33 H 1.08002 * 119.56910 * 179.74973 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3531 0.9520 -1.2359 6 8 4.3521 0.9523 1.2379 7 7 4.2672 3.0462 0.0014 8 6 4.5767 3.6738 -1.1753 9 1 3.9168 3.5832 -2.0255 10 6 5.7386 4.4268 -1.2757 11 7 6.7036 4.2678 -0.3956 12 14 5.9319 5.6657 -2.6602 13 1 5.4108 6.9850 -2.2204 14 1 7.3688 5.7937 -3.0128 15 1 5.1699 5.2035 -3.8481 16 6 4.2998 3.7541 1.1953 17 6 4.6476 5.1022 1.1889 18 6 4.6765 5.7949 2.3857 19 6 4.3563 5.1145 3.5533 20 6 4.0258 3.7750 3.4871 21 7 4.0012 3.1405 2.3310 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 7.5153 4.7942 -0.4656 30 1 4.8911 5.6003 0.2621 31 1 4.9421 6.8414 2.4116 32 1 4.3698 5.6265 4.5041 33 1 3.7801 3.2412 4.3932 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903169542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:48 Heat of formation + Delta-G solvation = -23.797483 kcal Electronic energy + Delta-G solvation = -19442.367176 eV Core-core repulsion = 16402.980852 eV Total energy + Delta-G solvation = -3039.386324 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.24953 -35.97061 -35.58254 -34.77942 -34.49356 -32.27084 -31.01088 -28.91921 -27.32667 -25.09650 -22.57049 -21.95168 -21.47903 -18.53343 -18.11036 -16.87216 -15.92282 -15.46564 -15.35134 -14.97377 -14.71197 -14.15631 -13.91312 -13.36663 -13.25696 -13.20286 -12.32537 -12.20564 -12.17577 -11.98984 -11.57962 -11.41340 -11.24270 -10.95815 -10.90515 -10.77109 -10.69870 -10.63153 -10.44337 -9.93740 -9.50768 -8.87003 -8.83455 -8.31338 -7.12660 -6.50261 -4.44958 1.25144 2.30489 2.34326 3.06230 3.13745 3.17242 3.68615 4.09924 4.58411 4.68546 4.91045 4.93826 5.16544 5.29813 5.34790 5.36242 5.67007 5.76692 5.81436 5.85666 5.99341 6.07246 6.11468 6.17349 6.29221 6.32669 6.74414 6.87252 7.18723 7.23081 7.39474 7.76062 8.27299 8.51530 8.86509 9.23534 10.45008 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.009911 C = 0.007139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.081940 B = 2824.607050 C = 3921.212073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.631 4.631 4 S 2.568 3.432 5 O -0.956 6.956 6 O -0.946 6.946 7 N -0.756 5.756 8 C -0.329 4.329 9 H 0.103 0.897 10 C 0.054 3.946 11 N -0.828 5.828 12 Si 0.918 3.082 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.262 1.262 16 C 0.399 3.601 17 C -0.156 4.156 18 C -0.070 4.070 19 C -0.245 4.245 20 C 0.124 3.876 21 N -0.533 5.533 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.276 0.724 30 H 0.139 0.861 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 0.962 2.269 8.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.758 4.758 4 S 2.667 3.333 5 O -0.947 6.947 6 O -0.935 6.935 7 N -0.568 5.568 8 C -0.463 4.463 9 H 0.121 0.879 10 C -0.159 4.159 11 N -0.460 5.460 12 Si 0.742 3.258 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.186 1.186 16 C 0.165 3.835 17 C -0.183 4.183 18 C -0.096 4.096 19 C -0.268 4.268 20 C -0.035 4.035 21 N -0.250 5.250 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.723 -0.789 2.158 8.058 hybrid contribution 0.074 1.930 -0.521 2.000 sum -7.649 1.141 1.636 7.905 Atomic orbital electron populations 1.21705 0.94648 1.01552 1.02144 1.21201 0.97913 0.93075 1.03045 1.30633 1.30085 1.04366 1.10673 1.07200 0.76893 0.75105 0.74079 1.93494 1.76723 1.78454 1.45986 1.93540 1.75913 1.79215 1.44854 1.50808 1.72353 1.24932 1.08694 1.19100 1.06292 1.31670 0.89221 0.87921 1.25654 0.93854 0.98888 0.97501 1.70128 1.04632 1.36195 1.35008 0.86086 0.78252 0.80303 0.81161 1.19597 1.20373 1.18603 1.18520 0.90772 0.88730 0.85468 1.21668 1.03300 0.94240 0.99096 1.21229 0.96776 0.99094 0.92535 1.21584 1.10257 0.96568 0.98388 1.22083 0.95658 0.91412 0.94332 1.67309 1.21524 1.38327 0.97862 0.92513 0.92488 0.92448 0.90889 0.90672 0.85574 0.85935 0.91330 0.84295 0.86600 0.86714 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.91 37.15 0.37 -1.34 16 2 C -0.11 -1.70 5.94 -26.73 -0.16 -1.86 16 3 C -0.63 -10.99 6.18 37.16 0.23 -10.76 16 4 S 2.57 59.94 5.17 -107.50 -0.56 59.39 16 5 O -0.96 -24.74 17.11 -57.54 -0.98 -25.72 16 6 O -0.95 -24.44 15.82 -57.54 -0.91 -25.35 16 7 N -0.76 -18.98 2.85 -11.15 -0.03 -19.01 16 8 C -0.33 -8.33 8.08 -15.07 -0.12 -8.46 16 9 H 0.10 2.43 7.89 -52.49 -0.41 2.01 16 10 C 0.05 1.35 3.13 -17.45 -0.05 1.29 16 11 N -0.83 -22.13 11.72 55.49 0.65 -21.48 16 12 Si 0.92 18.85 29.43 -169.99 -5.00 13.85 16 13 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 14 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 16 C 0.40 9.80 6.75 -155.07 -1.05 8.75 16 17 C -0.16 -3.58 7.84 -39.19 -0.31 -3.89 16 18 C -0.07 -1.36 10.17 -39.32 -0.40 -1.76 16 19 C -0.24 -4.40 10.11 -39.38 -0.40 -4.80 16 20 C 0.12 2.43 11.18 -17.56 -0.20 2.24 16 21 N -0.53 -12.48 7.88 -12.43 -0.10 -12.58 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.13 2.11 8.14 -51.92 -0.42 1.69 16 28 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 29 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.14 3.26 5.09 -52.49 -0.27 2.99 16 31 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.14 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 293.05 15.07 4.42 4.42 Total: -1.00 -32.37 293.05 -8.65 -41.02 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.04 Total: 6.05 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -2.09 Total: -20.58 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.52 Total: -53.07 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -1.89 Total: -51.07 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.00 Total: 13.85 kcal Atomic # 16 Polarization: 59.94 SS G_CDS: -0.56 Total: 59.39 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.37 -8.65 -41.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903169542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.222 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds