Wall clock time and date at job start Mon Mar 30 2020 01:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47180 * 2 1 4 4 S 1.81400 * 109.47320 * 179.97438 * 3 2 1 5 5 O 1.42097 * 110.54163 * 68.37683 * 4 3 2 6 6 O 1.42094 * 110.54434 * 291.63006 * 4 3 2 7 7 N 1.65603 * 104.45139 * 180.02562 * 4 3 2 8 8 C 1.36904 * 120.00144 * 263.08946 * 7 4 3 9 9 H 1.08002 * 120.00219 * 49.80190 * 8 7 4 10 10 C 1.38819 * 120.00326 * 229.80278 * 8 7 4 11 11 N 1.31568 * 119.99637 * 17.69025 * 10 8 7 12 12 Si 1.86792 * 120.00219 * 197.69355 * 10 8 7 13 13 H 1.48505 * 109.47325 * 90.00094 * 12 10 8 14 14 H 1.48500 * 109.47179 * 210.00011 * 12 10 8 15 15 H 1.48505 * 109.47128 * 329.99998 * 12 10 8 16 16 C 1.38835 * 119.99664 * 83.09100 * 7 4 3 17 17 C 1.39230 * 119.71176 * 180.02562 * 16 7 4 18 18 C 1.38311 * 119.09160 * 180.02562 * 17 16 7 19 19 C 1.38884 * 118.50548 * 0.02562 * 18 17 16 20 20 C 1.38125 * 119.34025 * 0.24908 * 19 18 17 21 21 N 1.31898 * 120.86247 * 359.47666 * 20 19 18 22 22 H 1.09003 * 109.47205 * 59.99328 * 1 2 3 23 23 H 1.08994 * 109.47118 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47174 * 299.99920 * 1 2 3 25 25 H 1.09002 * 109.46924 * 240.00733 * 2 1 3 26 26 H 1.08996 * 109.47313 * 120.00299 * 2 1 3 27 27 H 1.09004 * 109.47045 * 60.00271 * 3 2 1 28 28 H 1.09003 * 109.47600 * 300.00430 * 3 2 1 29 29 H 0.96998 * 119.99741 * 180.02562 * 11 10 8 30 30 H 1.07995 * 120.44982 * 0.04103 * 17 16 7 31 31 H 1.07996 * 120.74220 * 180.02562 * 18 17 16 32 32 H 1.08004 * 120.32679 * 179.97438 * 19 18 17 33 33 H 1.08002 * 119.56910 * 179.74973 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3531 0.9520 -1.2359 6 8 4.3521 0.9523 1.2379 7 7 4.2672 3.0462 0.0014 8 6 4.5767 3.6738 -1.1753 9 1 3.9168 3.5832 -2.0255 10 6 5.7386 4.4268 -1.2757 11 7 6.7036 4.2678 -0.3956 12 14 5.9319 5.6657 -2.6602 13 1 5.4108 6.9850 -2.2204 14 1 7.3688 5.7937 -3.0128 15 1 5.1699 5.2035 -3.8481 16 6 4.2998 3.7541 1.1953 17 6 4.6476 5.1022 1.1889 18 6 4.6765 5.7949 2.3857 19 6 4.3563 5.1145 3.5533 20 6 4.0258 3.7750 3.4871 21 7 4.0012 3.1405 2.3310 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 7.5153 4.7942 -0.4656 30 1 4.8911 5.6003 0.2621 31 1 4.9421 6.8414 2.4116 32 1 4.3698 5.6265 4.5041 33 1 3.7801 3.2412 4.3932 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903169542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:48 Heat of formation + Delta-G solvation = -45.762015 kcal Electronic energy + Delta-G solvation = -19443.319629 eV Core-core repulsion = 16402.980852 eV Total energy + Delta-G solvation = -3040.338777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.88659 -37.85231 -37.32134 -36.63026 -35.77277 -34.04183 -32.69117 -30.54786 -28.56729 -26.92715 -24.15973 -23.55211 -22.75187 -20.33716 -19.83800 -18.64464 -17.66637 -17.13970 -16.79736 -16.64081 -16.29255 -15.77541 -15.55661 -15.00048 -14.94307 -14.42570 -13.78336 -13.70740 -13.56437 -13.42004 -13.28971 -13.12806 -12.84362 -12.70181 -12.63649 -12.33186 -12.23938 -12.05940 -11.85235 -11.66019 -11.10703 -10.65440 -10.46062 -9.97149 -8.86238 -8.30629 -6.36322 -0.47227 0.71532 0.75187 1.44446 1.45188 1.57268 1.95485 2.37708 2.78343 3.04793 3.40431 3.48161 3.63478 3.76325 3.93283 4.20164 4.26701 4.43654 4.53477 4.61971 4.62496 4.71222 4.73302 5.02496 5.06843 5.14166 5.25459 5.29593 5.40278 5.63148 5.78201 6.06194 6.51421 6.72725 7.06170 7.52352 8.62330 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.009911 C = 0.007139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.081940 B = 2824.607050 C = 3921.212073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C -0.594 4.594 4 S 2.554 3.446 5 O -0.998 6.998 6 O -0.984 6.984 7 N -0.773 5.773 8 C -0.351 4.351 9 H 0.108 0.892 10 C 0.014 3.986 11 N -0.873 5.873 12 Si 0.981 3.019 13 H -0.254 1.254 14 H -0.282 1.282 15 H -0.255 1.255 16 C 0.369 3.631 17 C -0.182 4.182 18 C -0.068 4.068 19 C -0.225 4.225 20 C 0.108 3.892 21 N -0.559 5.559 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.276 0.724 30 H 0.125 0.875 31 H 0.150 0.850 32 H 0.162 0.838 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.177 2.206 3.183 10.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C -0.726 4.726 4 S 2.660 3.340 5 O -0.989 6.989 6 O -0.974 6.974 7 N -0.586 5.586 8 C -0.484 4.484 9 H 0.125 0.875 10 C -0.195 4.195 11 N -0.506 5.506 12 Si 0.802 3.198 13 H -0.178 1.178 14 H -0.207 1.207 15 H -0.179 1.179 16 C 0.137 3.863 17 C -0.208 4.208 18 C -0.095 4.095 19 C -0.248 4.248 20 C -0.050 4.050 21 N -0.277 5.277 22 H 0.084 0.916 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.156 0.844 28 H 0.161 0.839 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.167 0.833 32 H 0.179 0.821 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.597 0.478 3.082 10.091 hybrid contribution 0.553 1.501 -0.641 1.723 sum -9.044 1.979 2.442 9.575 Atomic orbital electron populations 1.21714 0.91585 1.03406 1.02996 1.21428 1.00505 0.90966 1.03423 1.30279 1.23082 1.06958 1.12303 1.07143 0.79701 0.74477 0.72712 1.93430 1.79333 1.79183 1.46923 1.93480 1.78523 1.79754 1.45599 1.50824 1.73658 1.25133 1.09006 1.19434 1.06837 1.32366 0.89809 0.87458 1.26513 0.93133 1.00188 0.99653 1.70245 1.05323 1.37704 1.37359 0.85145 0.77874 0.78502 0.78290 1.17811 1.20744 1.17912 1.18742 0.92372 0.89561 0.85637 1.21721 1.04788 0.94174 1.00129 1.21674 0.95395 1.00662 0.91724 1.22057 1.07098 0.95830 0.99766 1.22831 0.95097 0.92724 0.94309 1.67312 1.22388 1.39375 0.98616 0.91557 0.90238 0.91742 0.90559 0.90632 0.84386 0.83906 0.91431 0.85701 0.83252 0.82055 0.80736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.91 71.98 0.71 -2.16 16 2 C -0.12 -3.51 5.94 30.59 0.18 -3.33 16 3 C -0.59 -20.08 6.18 71.98 0.44 -19.64 16 4 S 2.55 122.88 5.17 -56.49 -0.29 122.58 16 5 O -1.00 -53.88 17.11 -127.65 -2.18 -56.06 16 6 O -0.98 -52.73 15.82 -127.65 -2.02 -54.75 16 7 N -0.77 -40.02 2.85 -189.20 -0.54 -40.56 16 8 C -0.35 -18.37 8.08 84.04 0.68 -17.69 16 9 H 0.11 5.24 7.89 -2.91 -0.02 5.22 16 10 C 0.01 0.69 3.13 84.87 0.27 0.96 16 11 N -0.87 -48.36 11.72 21.65 0.25 -48.11 16 12 Si 0.98 39.16 29.43 68.60 2.02 41.18 16 13 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 14 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 15 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 16 C 0.37 18.42 6.75 133.12 0.90 19.32 16 17 C -0.18 -8.34 7.84 22.53 0.18 -8.17 16 18 C -0.07 -2.50 10.17 22.44 0.23 -2.27 16 19 C -0.23 -7.32 10.11 22.40 0.23 -7.10 16 20 C 0.11 4.03 11.18 84.66 0.95 4.98 16 21 N -0.56 -26.14 7.88 -193.23 -1.52 -27.66 16 22 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 25 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 28 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 29 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.13 5.98 5.09 -2.91 -0.01 5.96 16 31 H 0.15 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 33 H 0.18 5.11 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -73.90 293.05 1.58 -72.31 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 1.11 Total: 26.17 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 4.76 Total: -35.10 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -1.81 Total: -116.33 kcal Atomic # 8 Polarization: -106.61 SS G_CDS: -4.20 Total: -110.81 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.02 Total: 41.18 kcal Atomic # 16 Polarization: 122.88 SS G_CDS: -0.29 Total: 122.58 kcal Total: -73.90 1.58 -72.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903169542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.551 kcal (2) G-P(sol) polarization free energy of solvation -73.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds