Wall clock time and date at job start Mon Mar 30 2020 01:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50706 * 109.46975 * 2 1 4 4 N 1.31224 * 124.06405 * 89.96844 * 3 2 1 5 5 N 1.27326 * 120.04788 * 180.02562 * 4 3 2 6 6 S 1.56637 * 109.75699 * 0.02562 * 5 4 3 7 7 C 1.38319 * 124.06228 * 269.97298 * 3 2 1 8 8 C 1.47018 * 128.48192 * 0.02562 * 7 3 2 9 9 O 1.21544 * 120.00010 * 359.97438 * 8 7 3 10 10 O 1.34804 * 120.00228 * 179.97438 * 8 7 3 11 11 C 1.45201 * 116.99929 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47168 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47257 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46988 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00340 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99767 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00172 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00001 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47035 * 59.99696 * 18 16 14 20 20 H 1.48500 * 109.47228 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47079 * 300.00126 * 18 16 14 22 22 H 1.09005 * 109.46706 * 60.00430 * 1 2 3 23 23 H 1.08999 * 109.46597 * 179.97438 * 1 2 3 24 24 H 1.08989 * 109.47330 * 300.00297 * 1 2 3 25 25 H 1.08994 * 109.47770 * 239.99547 * 2 1 3 26 26 H 1.09004 * 109.46902 * 119.99056 * 2 1 3 27 27 H 1.09002 * 109.47428 * 300.00154 * 11 10 8 28 28 H 1.08997 * 109.47262 * 60.00017 * 11 10 8 29 29 H 1.09002 * 109.46804 * 300.00208 * 12 11 10 30 30 H 1.08997 * 109.47282 * 59.99702 * 12 11 10 31 31 H 1.08996 * 109.46755 * 299.99766 * 13 12 11 32 32 H 1.09005 * 109.47025 * 59.99961 * 13 12 11 33 33 H 0.97002 * 120.00405 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2768 2.1141 1.0871 5 7 2.6997 3.3117 0.9979 6 16 2.8410 3.7125 -0.5097 7 6 2.2911 2.1511 -1.1459 8 6 2.1443 1.7353 -2.5484 9 8 1.7489 0.6167 -2.8123 10 8 2.4481 2.5946 -3.5416 11 6 2.2796 2.1158 -4.9020 12 6 2.6712 3.2218 -5.8840 13 6 2.4943 2.7172 -7.3176 14 6 2.8794 3.8067 -8.2848 15 1 3.2170 4.7634 -7.9142 16 6 2.8007 3.5823 -9.6429 17 7 2.3901 2.4174 -10.0942 18 14 3.2788 4.9327 -10.8419 19 1 4.6982 5.3100 -10.6222 20 1 3.1070 4.4429 -12.2332 21 1 2.4119 6.1184 -10.6233 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8935 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 2.9163 1.2458 -5.0625 28 1 1.2379 1.8384 -5.0632 29 1 2.0348 4.0921 -5.7236 30 1 3.7130 3.4989 -5.7227 31 1 3.1310 1.8471 -7.4775 32 1 1.4526 2.4398 -7.4792 33 1 2.3351 2.2594 -11.0497 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914618951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:12 Heat of formation + Delta-G solvation = -35.989706 kcal Electronic energy + Delta-G solvation = -17568.622237 eV Core-core repulsion = 14528.707219 eV Total energy + Delta-G solvation = -3039.915018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.34529 -40.15762 -36.74082 -34.64347 -34.08946 -31.86938 -30.89637 -28.24984 -26.99562 -24.55325 -23.59404 -22.48475 -20.70651 -20.30019 -18.87099 -17.53307 -16.92226 -16.71196 -16.15175 -15.92175 -14.94998 -14.51941 -14.42912 -14.14534 -13.76960 -13.18526 -12.80791 -12.42198 -12.32148 -12.26182 -11.97274 -11.73478 -11.25313 -11.01351 -10.86018 -10.74439 -10.65442 -10.54560 -10.42290 -10.16546 -10.06680 -9.81771 -9.59257 -9.24023 -8.43239 -6.08157 -4.11627 -0.62819 0.53212 1.18590 1.57264 2.46982 2.48909 3.29441 3.34168 3.36379 3.53483 4.17058 4.38916 4.63974 4.82673 5.00624 5.03286 5.27897 5.43658 5.44442 5.48124 5.65424 5.80851 5.87516 5.96745 6.24132 6.43351 6.66326 6.88096 7.32009 7.53176 7.57059 7.63765 7.89386 8.29821 8.94255 9.53031 11.03168 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034667 B = 0.003336 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.479811 B = 8391.630436 C = 9087.820918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C 0.111 3.889 4 N -0.253 5.253 5 N -0.260 5.260 6 S 0.474 5.526 7 C -0.285 4.285 8 C 0.548 3.452 9 O -0.483 6.483 10 O -0.351 6.351 11 C 0.070 3.930 12 C -0.110 4.110 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.076 -1.513 20.033 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C -0.037 4.037 4 N -0.117 5.117 5 N -0.242 5.242 6 S 0.611 5.389 7 C -0.424 4.424 8 C 0.388 3.612 9 O -0.371 6.371 10 O -0.267 6.267 11 C -0.002 4.002 12 C -0.148 4.148 13 C -0.012 4.012 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.124 0.876 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.674 -0.379 20.861 20.875 hybrid contribution -0.192 -0.595 -1.437 1.568 sum -0.866 -0.974 19.424 19.467 Atomic orbital electron populations 1.21680 0.93122 1.02933 1.02311 1.20359 0.97124 0.86303 1.05252 1.23058 0.96085 0.99725 0.84853 1.70683 1.14369 0.99126 1.27571 1.78740 1.17935 1.10568 1.16943 1.82894 1.43797 1.13071 0.99161 1.26746 1.16957 1.01462 0.97193 1.18968 0.75095 0.83258 0.83849 1.90869 1.42001 1.20333 1.83923 1.86570 1.78338 1.44041 1.17740 1.23672 1.02309 0.99702 0.74539 1.21809 1.01455 0.96263 0.95235 1.19050 0.97681 0.97001 0.87512 1.21118 1.44865 0.99298 0.90926 0.92437 1.25022 0.95175 0.95657 0.98529 1.69946 1.46841 1.22404 1.14110 0.86602 0.79115 0.82016 0.79957 1.20156 1.21245 1.20150 0.92162 0.91027 0.92401 0.87561 0.89132 0.90970 0.90968 0.91947 0.91947 0.96152 0.96155 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.90 37.16 0.37 -0.89 16 2 C -0.05 -0.48 5.95 -27.88 -0.17 -0.64 16 3 C 0.11 1.28 6.25 -82.82 -0.52 0.76 16 4 N -0.25 -3.10 11.54 33.43 0.39 -2.72 16 5 N -0.26 -3.07 12.51 60.35 0.75 -2.31 16 6 S 0.47 4.78 23.63 -107.50 -2.54 2.24 16 7 C -0.29 -3.46 6.83 -35.99 -0.25 -3.70 16 8 C 0.55 7.81 7.95 34.29 0.27 8.08 16 9 O -0.48 -7.59 14.69 -19.30 -0.28 -7.87 16 10 O -0.35 -5.33 10.22 -40.78 -0.42 -5.75 16 11 C 0.07 1.18 5.48 37.16 0.20 1.38 16 12 C -0.11 -2.13 5.53 -26.73 -0.15 -2.28 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 18 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.49 8.14 -51.94 -0.42 0.06 16 25 H 0.11 1.10 6.47 -51.93 -0.34 0.77 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 308.10 15.07 4.64 4.64 Total: -1.00 -29.99 308.10 -6.63 -36.62 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -4.10 Total: -5.53 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -0.78 Total: -9.93 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 1.88 Total: -30.51 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.70 Total: -13.62 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -2.54 Total: 2.24 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.99 -6.63 -36.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914618951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.635 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds