Wall clock time and date at job start Mon Mar 30 2020 01:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50706 * 109.46975 * 2 1 4 4 N 1.31224 * 124.06405 * 89.96844 * 3 2 1 5 5 N 1.27326 * 120.04788 * 180.02562 * 4 3 2 6 6 S 1.56637 * 109.75699 * 0.02562 * 5 4 3 7 7 C 1.38319 * 124.06228 * 269.97298 * 3 2 1 8 8 C 1.47018 * 128.48192 * 0.02562 * 7 3 2 9 9 O 1.21544 * 120.00010 * 359.97438 * 8 7 3 10 10 O 1.34804 * 120.00228 * 179.97438 * 8 7 3 11 11 C 1.45201 * 116.99929 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47168 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47257 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46988 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00340 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99767 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00172 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00001 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47035 * 59.99696 * 18 16 14 20 20 H 1.48500 * 109.47228 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47079 * 300.00126 * 18 16 14 22 22 H 1.09005 * 109.46706 * 60.00430 * 1 2 3 23 23 H 1.08999 * 109.46597 * 179.97438 * 1 2 3 24 24 H 1.08989 * 109.47330 * 300.00297 * 1 2 3 25 25 H 1.08994 * 109.47770 * 239.99547 * 2 1 3 26 26 H 1.09004 * 109.46902 * 119.99056 * 2 1 3 27 27 H 1.09002 * 109.47428 * 300.00154 * 11 10 8 28 28 H 1.08997 * 109.47262 * 60.00017 * 11 10 8 29 29 H 1.09002 * 109.46804 * 300.00208 * 12 11 10 30 30 H 1.08997 * 109.47282 * 59.99702 * 12 11 10 31 31 H 1.08996 * 109.46755 * 299.99766 * 13 12 11 32 32 H 1.09005 * 109.47025 * 59.99961 * 13 12 11 33 33 H 0.97002 * 120.00405 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2768 2.1141 1.0871 5 7 2.6997 3.3117 0.9979 6 16 2.8410 3.7125 -0.5097 7 6 2.2911 2.1511 -1.1459 8 6 2.1443 1.7353 -2.5484 9 8 1.7489 0.6167 -2.8123 10 8 2.4481 2.5946 -3.5416 11 6 2.2796 2.1158 -4.9020 12 6 2.6712 3.2218 -5.8840 13 6 2.4943 2.7172 -7.3176 14 6 2.8794 3.8067 -8.2848 15 1 3.2170 4.7634 -7.9142 16 6 2.8007 3.5823 -9.6429 17 7 2.3901 2.4174 -10.0942 18 14 3.2788 4.9327 -10.8419 19 1 4.6982 5.3100 -10.6222 20 1 3.1070 4.4429 -12.2332 21 1 2.4119 6.1184 -10.6233 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8935 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 2.9163 1.2458 -5.0625 28 1 1.2379 1.8384 -5.0632 29 1 2.0348 4.0921 -5.7236 30 1 3.7130 3.4989 -5.7227 31 1 3.1310 1.8471 -7.4775 32 1 1.4526 2.4398 -7.4792 33 1 2.3351 2.2594 -11.0497 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914618951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:12 Heat of formation + Delta-G solvation = -53.171473 kcal Electronic energy + Delta-G solvation = -17569.367294 eV Core-core repulsion = 14528.707219 eV Total energy + Delta-G solvation = -3040.660075 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.27895 -41.31952 -37.98439 -35.94279 -35.47842 -33.71493 -31.83030 -29.45180 -28.52997 -25.74838 -24.87349 -23.67773 -22.18147 -21.56341 -19.80077 -18.62463 -18.56551 -17.90090 -17.71121 -16.93417 -16.48706 -15.81169 -15.61036 -15.17873 -15.01423 -14.26783 -14.02059 -13.90486 -13.82066 -13.57064 -13.20265 -12.80532 -12.56707 -12.49504 -12.38317 -12.13081 -12.07876 -11.85580 -11.53855 -11.43465 -11.32017 -11.22123 -11.07936 -10.90983 -10.54637 -8.20095 -6.31144 -1.55482 -0.34775 0.30183 0.62933 1.29849 1.42103 1.43843 1.45903 1.53968 2.42685 2.66252 3.14245 3.27034 3.52588 3.98119 4.02120 4.03020 4.27924 4.29776 4.42233 4.73410 4.82035 4.82104 4.97534 5.06085 5.09579 5.22610 5.31726 5.51377 5.66787 5.82536 6.20587 6.38665 6.44541 6.84932 7.38420 8.91699 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034667 B = 0.003336 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.479811 B = 8391.630436 C = 9087.820918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 C 0.118 3.882 4 N -0.269 5.269 5 N -0.275 5.275 6 S 0.540 5.460 7 C -0.313 4.313 8 C 0.552 3.448 9 O -0.501 6.501 10 O -0.349 6.349 11 C 0.080 3.920 12 C -0.096 4.096 13 C 0.026 3.974 14 C -0.544 4.544 15 H 0.066 0.934 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.266 1.266 22 H 0.042 0.958 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.069 0.931 31 H -0.001 1.001 32 H -0.001 1.001 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 -0.316 20.940 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.092 4.092 3 C -0.031 4.031 4 N -0.133 5.133 5 N -0.257 5.257 6 S 0.677 5.323 7 C -0.451 4.451 8 C 0.394 3.606 9 O -0.390 6.390 10 O -0.265 6.265 11 C 0.007 3.993 12 C -0.133 4.133 13 C -0.012 4.012 14 C -0.581 4.581 15 H 0.084 0.916 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.191 1.191 22 H 0.062 0.938 23 H 0.106 0.894 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.249 0.830 21.798 21.815 hybrid contribution -0.315 -0.947 -1.656 1.934 sum -0.564 -0.117 20.142 20.150 Atomic orbital electron populations 1.21663 0.92499 1.03867 1.01646 1.20459 0.97580 0.85446 1.05723 1.23335 0.95018 1.00288 0.84467 1.70749 1.15342 0.99352 1.27816 1.78577 1.18016 1.10704 1.18399 1.82666 1.41416 1.10872 0.97322 1.26626 1.19103 1.03295 0.96089 1.19158 0.74388 0.82827 0.84253 1.90863 1.42844 1.21030 1.84263 1.86527 1.78673 1.44184 1.17124 1.23310 1.02203 0.98530 0.75234 1.21491 1.02124 0.96940 0.92784 1.18933 0.95685 0.95871 0.90680 1.21610 1.44525 1.00180 0.91829 0.91618 1.25967 0.95098 0.98042 1.00665 1.70080 1.48125 1.24561 1.14535 0.85492 0.79237 0.79035 0.77245 1.19094 1.21110 1.19079 0.93839 0.89364 0.91941 0.88432 0.87243 0.91011 0.91027 0.91228 0.91221 0.98292 0.98301 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.90 71.98 0.71 -1.58 16 2 C -0.05 -0.93 5.95 29.85 0.18 -0.75 16 3 C 0.12 2.58 6.25 42.67 0.27 2.85 16 4 N -0.27 -6.20 11.54 -48.14 -0.56 -6.75 16 5 N -0.28 -5.99 12.51 37.02 0.46 -5.53 16 6 S 0.54 9.83 23.63 -56.49 -1.34 8.50 16 7 C -0.31 -7.20 6.83 24.59 0.17 -7.03 16 8 C 0.55 15.27 7.95 70.12 0.56 15.82 16 9 O -0.50 -15.57 14.69 19.69 0.29 -15.28 16 10 O -0.35 -10.20 10.22 -57.15 -0.58 -10.78 16 11 C 0.08 2.66 5.48 71.98 0.39 3.05 16 12 C -0.10 -3.65 5.53 30.60 0.17 -3.48 16 13 C 0.03 1.28 4.97 29.85 0.15 1.42 16 14 C -0.54 -29.67 9.11 25.60 0.23 -29.44 16 15 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 16 C 0.00 0.02 5.46 84.66 0.46 0.48 16 17 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 18 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 23 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.10 1.96 6.47 -2.39 -0.02 1.95 16 26 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.00 -0.08 8.14 -2.38 -0.02 -0.09 16 33 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -63.40 308.10 5.00 -58.41 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: 1.12 Total: 0.35 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 3.29 Total: -18.65 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: 0.19 Total: -67.47 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.30 Total: -26.06 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 9.83 SS G_CDS: -1.34 Total: 8.50 kcal Total: -63.40 5.00 -58.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914618951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.237 kcal (2) G-P(sol) polarization free energy of solvation -63.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds