Wall clock time and date at job start Mon Mar 30 2020 01:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.86997 * 2 1 4 4 O 1.43750 * 109.87787 * 238.99266 * 2 1 3 5 5 C 1.44730 * 106.78766 * 213.95602 * 4 2 1 6 6 C 1.54992 * 103.51596 * 40.07842 * 5 4 2 7 7 C 1.54103 * 109.87979 * 121.00787 * 2 1 3 8 8 H 1.08992 * 110.48760 * 240.28079 * 7 2 1 9 9 C 1.50706 * 110.48594 * 2.92803 * 7 2 1 10 10 N 1.30271 * 126.28295 * 60.02176 * 9 7 2 11 11 N 1.28672 * 109.38011 * 179.97438 * 10 9 7 12 12 C 1.30273 * 109.37805 * 0.02562 * 11 10 9 13 13 C 1.50706 * 126.28199 * 180.02562 * 12 11 10 14 14 S 1.81001 * 109.47090 * 90.01651 * 13 12 11 15 15 C 1.76202 * 100.00045 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99786 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00230 * 180.02562 * 15 14 13 18 18 N 1.31633 * 119.99711 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00054 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47183 * 89.99930 * 19 17 15 21 21 H 1.48500 * 109.47357 * 209.99482 * 19 17 15 22 22 H 1.48494 * 109.47296 * 329.99920 * 19 17 15 23 23 O 1.34358 * 126.27919 * 239.71240 * 9 7 2 24 24 H 1.09001 * 109.46604 * 299.29799 * 1 2 3 25 25 H 1.08995 * 109.46997 * 59.29706 * 1 2 3 26 26 H 1.08995 * 109.46998 * 179.29903 * 1 2 3 27 27 H 1.08994 * 110.63124 * 281.55844 * 5 4 2 28 28 H 1.09000 * 110.57261 * 158.57553 * 5 4 2 29 29 H 1.09007 * 110.90687 * 204.74147 * 6 5 4 30 30 H 1.09004 * 110.94169 * 81.15615 * 6 5 4 31 31 H 1.08999 * 109.47231 * 210.02286 * 13 12 11 32 32 H 1.08999 * 109.46428 * 330.02288 * 13 12 11 33 33 H 0.97009 * 119.99519 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6964 -1.1587 5 6 3.2418 -1.3610 -0.7620 6 6 2.9227 -1.8882 0.6601 7 6 2.0541 -0.7466 1.2421 8 1 2.6598 -0.0827 1.8588 9 6 0.9075 -1.3109 2.0410 10 7 0.0251 -2.1721 1.6206 11 7 -0.8057 -2.4295 2.5687 12 6 -0.4819 -1.7408 3.6261 13 6 -1.1977 -1.7533 4.9522 14 16 -0.4849 -3.0372 6.0105 15 6 -1.4807 -2.8349 7.4500 16 1 -2.2534 -2.0805 7.4704 17 6 -1.2721 -3.6449 8.5576 18 7 -0.3307 -4.5646 8.5324 19 14 -2.3283 -3.4308 10.0834 20 1 -3.5267 -4.3019 9.9821 21 1 -1.5428 -3.8075 11.2860 22 1 -2.7551 -2.0129 10.1951 23 8 0.6113 -1.0224 3.3194 24 1 -0.3632 0.5029 0.8962 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3633 -1.0275 -0.0126 27 1 4.0708 -0.6539 -0.7321 28 1 3.4649 -2.1874 -1.4367 29 1 3.8359 -2.0171 1.2412 30 1 2.3593 -2.8202 0.6128 31 1 -1.0867 -0.7820 5.4342 32 1 -2.2557 -1.9607 4.7920 33 1 -0.1852 -5.1309 9.3065 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118194263.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:20 Heat of formation + Delta-G solvation = -7.662813 kcal Electronic energy + Delta-G solvation = -18130.958510 eV Core-core repulsion = 15092.271838 eV Total energy + Delta-G solvation = -3038.686672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.02130 -39.84221 -35.89348 -34.05953 -32.59941 -31.75862 -31.56415 -27.83833 -26.45026 -25.62889 -23.42949 -22.56455 -22.17844 -20.61423 -17.93938 -17.33769 -17.05636 -16.48284 -16.02736 -15.66278 -14.94037 -14.56219 -14.46492 -14.12474 -13.51117 -12.94031 -12.87452 -12.80795 -12.60506 -12.36707 -12.03429 -11.66916 -11.45433 -11.31096 -11.19040 -11.14151 -11.07305 -10.96043 -10.63087 -10.18925 -9.97692 -9.21100 -9.09929 -8.53186 -6.77126 -6.38508 -4.13482 1.30053 2.35139 2.50909 3.15310 3.15855 3.22683 3.38353 3.52636 3.85838 4.05354 4.18366 4.38641 4.61076 4.71271 4.74322 4.88535 4.99134 5.12760 5.18720 5.24856 5.35027 5.44937 5.45269 5.63136 5.64768 5.73254 5.79297 5.82628 5.89850 6.08510 6.26219 6.60840 7.45559 8.20054 8.58478 9.07389 10.69531 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.052044 B = 0.003696 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.879159 B = 7573.530014 C = 7831.038197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 H 0.082 0.918 4 O -0.365 6.365 5 C 0.049 3.951 6 C -0.146 4.146 7 C -0.022 4.022 8 H 0.114 0.886 9 C 0.151 3.849 10 N -0.272 5.272 11 N -0.286 5.286 12 C 0.210 3.790 13 C -0.039 4.039 14 S -0.085 6.085 15 C -0.527 4.527 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.867 5.867 19 Si 0.925 3.075 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.270 1.270 23 O -0.219 6.219 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.372 9.436 -14.049 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.031 3.969 3 H 0.099 0.901 4 O -0.284 6.284 5 C -0.027 4.027 6 C -0.184 4.184 7 C -0.043 4.043 8 H 0.132 0.868 9 C -0.060 4.060 10 N -0.120 5.120 11 N -0.134 5.134 12 C 0.000 4.000 13 C -0.187 4.187 14 S 0.141 5.859 15 C -0.675 4.675 16 H 0.098 0.902 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.751 3.249 20 H -0.200 1.200 21 H -0.206 1.206 22 H -0.195 1.195 23 O -0.098 6.098 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.112 0.888 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.131 0.869 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.555 7.750 -15.112 18.204 hybrid contribution -0.833 1.697 2.358 3.022 sum 5.722 9.446 -12.754 16.871 Atomic orbital electron populations 1.22317 0.93143 1.05282 1.01809 1.22643 0.96120 0.95009 0.83085 0.90052 1.89017 1.39540 1.67813 1.32074 1.23611 0.87645 0.96713 0.94768 1.23291 1.00091 0.98585 0.96483 1.21122 0.90243 0.98093 0.94809 0.86793 1.27172 1.00208 0.97922 0.80704 1.74293 1.02079 1.12616 1.22992 1.74474 1.21462 1.20470 0.96973 1.27467 0.84560 0.89258 0.98718 1.21951 1.01243 1.06952 0.88563 1.85187 1.48264 1.40987 1.11456 1.22709 1.21874 1.23987 0.98922 0.90189 1.25031 0.95583 0.94214 0.98671 1.70005 1.30140 1.19200 1.30862 0.86059 0.79634 0.78827 0.80402 1.20029 1.20647 1.19479 1.84784 1.39999 1.56223 1.28832 0.92183 0.91653 0.88829 0.91627 0.88269 0.88958 0.88758 0.88444 0.86920 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 8.34 37.16 0.31 -1.71 16 2 C 0.09 0.95 4.04 -26.15 -0.11 0.84 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 O -0.37 -4.15 11.21 -35.23 -0.40 -4.55 16 5 C 0.05 0.40 7.72 38.21 0.30 0.70 16 6 C -0.15 -1.40 6.70 -24.73 -0.17 -1.57 16 7 C -0.02 -0.25 3.58 -90.24 -0.32 -0.57 16 8 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 9 C 0.15 2.34 5.45 -12.94 -0.07 2.27 16 10 N -0.27 -4.86 9.55 32.55 0.31 -4.55 16 11 N -0.29 -5.72 12.22 32.55 0.40 -5.32 16 12 C 0.21 4.06 7.73 -12.94 -0.10 3.96 16 13 C -0.04 -0.77 6.30 36.01 0.23 -0.55 16 14 S -0.09 -2.17 21.42 -107.50 -2.30 -4.48 16 15 C -0.53 -14.31 9.50 30.94 0.29 -14.02 16 16 H 0.08 2.05 7.80 -52.48 -0.41 1.64 16 17 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 18 N -0.87 -25.06 13.22 55.49 0.73 -24.33 16 19 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 O -0.22 -3.86 10.87 5.40 0.06 -3.80 16 24 H 0.06 0.73 7.62 -51.93 -0.40 0.33 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.36 5.77 -51.93 -0.30 1.06 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.09 1.11 7.67 -51.93 -0.40 0.71 16 31 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 32 H 0.11 2.13 8.14 -51.92 -0.42 1.71 16 33 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 296.54 15.07 4.47 4.47 Total: -1.00 -31.63 296.54 -5.51 -37.13 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.02 Total: -1.49 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 0.26 Total: -8.69 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 1.44 Total: -34.20 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.34 Total: -8.35 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -2.30 Total: -4.48 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.63 -5.51 -37.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118194263.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.471 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds