Wall clock time and date at job start Mon Mar 30 2020 01:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.86997 * 2 1 4 4 O 1.43750 * 109.87787 * 238.99266 * 2 1 3 5 5 C 1.44730 * 106.78766 * 213.95602 * 4 2 1 6 6 C 1.54992 * 103.51596 * 40.07842 * 5 4 2 7 7 C 1.54103 * 109.87979 * 121.00787 * 2 1 3 8 8 H 1.08992 * 110.48760 * 240.28079 * 7 2 1 9 9 C 1.50706 * 110.48594 * 2.92803 * 7 2 1 10 10 N 1.30271 * 126.28295 * 60.02176 * 9 7 2 11 11 N 1.28672 * 109.38011 * 179.97438 * 10 9 7 12 12 C 1.30273 * 109.37805 * 0.02562 * 11 10 9 13 13 C 1.50706 * 126.28199 * 180.02562 * 12 11 10 14 14 S 1.81001 * 109.47090 * 90.01651 * 13 12 11 15 15 C 1.76202 * 100.00045 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99786 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00230 * 180.02562 * 15 14 13 18 18 N 1.31633 * 119.99711 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00054 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47183 * 89.99930 * 19 17 15 21 21 H 1.48500 * 109.47357 * 209.99482 * 19 17 15 22 22 H 1.48494 * 109.47296 * 329.99920 * 19 17 15 23 23 O 1.34358 * 126.27919 * 239.71240 * 9 7 2 24 24 H 1.09001 * 109.46604 * 299.29799 * 1 2 3 25 25 H 1.08995 * 109.46997 * 59.29706 * 1 2 3 26 26 H 1.08995 * 109.46998 * 179.29903 * 1 2 3 27 27 H 1.08994 * 110.63124 * 281.55844 * 5 4 2 28 28 H 1.09000 * 110.57261 * 158.57553 * 5 4 2 29 29 H 1.09007 * 110.90687 * 204.74147 * 6 5 4 30 30 H 1.09004 * 110.94169 * 81.15615 * 6 5 4 31 31 H 1.08999 * 109.47231 * 210.02286 * 13 12 11 32 32 H 1.08999 * 109.46428 * 330.02288 * 13 12 11 33 33 H 0.97009 * 119.99519 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6964 -1.1587 5 6 3.2418 -1.3610 -0.7620 6 6 2.9227 -1.8882 0.6601 7 6 2.0541 -0.7466 1.2421 8 1 2.6598 -0.0827 1.8588 9 6 0.9075 -1.3109 2.0410 10 7 0.0251 -2.1721 1.6206 11 7 -0.8057 -2.4295 2.5687 12 6 -0.4819 -1.7408 3.6261 13 6 -1.1977 -1.7533 4.9522 14 16 -0.4849 -3.0372 6.0105 15 6 -1.4807 -2.8349 7.4500 16 1 -2.2534 -2.0805 7.4704 17 6 -1.2721 -3.6449 8.5576 18 7 -0.3307 -4.5646 8.5324 19 14 -2.3283 -3.4308 10.0834 20 1 -3.5267 -4.3019 9.9821 21 1 -1.5428 -3.8075 11.2860 22 1 -2.7551 -2.0129 10.1951 23 8 0.6113 -1.0224 3.3194 24 1 -0.3632 0.5029 0.8962 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3633 -1.0275 -0.0126 27 1 4.0708 -0.6539 -0.7321 28 1 3.4649 -2.1874 -1.4367 29 1 3.8359 -2.0171 1.2412 30 1 2.3593 -2.8202 0.6128 31 1 -1.0867 -0.7820 5.4342 32 1 -2.2557 -1.9607 4.7920 33 1 -0.1852 -5.1309 9.3065 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118194263.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:19 Heat of formation + Delta-G solvation = -32.069759 kcal Electronic energy + Delta-G solvation = -18132.016875 eV Core-core repulsion = 15092.271838 eV Total energy + Delta-G solvation = -3039.745036 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.41384 -40.65417 -37.30798 -35.14585 -34.65197 -32.92004 -32.52337 -29.22355 -27.74418 -27.35313 -24.60747 -23.83611 -23.13100 -21.62800 -19.90750 -18.66653 -18.28787 -17.43080 -16.95271 -16.92904 -16.56889 -16.31808 -15.76090 -15.34266 -14.73708 -14.44144 -14.32798 -13.82990 -13.55394 -13.36608 -13.26233 -13.15714 -12.94802 -12.92097 -12.78649 -12.31123 -12.22490 -11.98799 -11.90753 -11.80509 -11.18942 -10.84523 -10.67528 -10.24743 -8.81796 -8.42384 -6.23242 -0.11596 0.94627 1.11254 1.38096 1.42784 1.53394 1.71605 2.19093 2.56300 2.81621 2.94299 3.16848 3.28809 3.40259 3.56726 3.71904 3.99528 4.06384 4.15339 4.21618 4.30209 4.37347 4.46797 4.53478 4.56456 4.61273 4.82573 4.87639 4.91404 5.04381 5.26488 5.38265 5.86854 6.14511 7.00206 7.17709 8.67281 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.052044 B = 0.003696 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.879159 B = 7573.530014 C = 7831.038197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 H 0.115 0.885 4 O -0.388 6.388 5 C 0.051 3.949 6 C -0.146 4.146 7 C -0.028 4.028 8 H 0.147 0.853 9 C 0.174 3.826 10 N -0.297 5.297 11 N -0.306 5.306 12 C 0.196 3.804 13 C -0.013 4.013 14 S -0.153 6.153 15 C -0.540 4.540 16 H 0.089 0.911 17 C 0.019 3.981 18 N -0.909 5.909 19 Si 1.000 3.000 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.257 1.257 23 O -0.222 6.222 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.070 11.256 -14.246 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.035 3.965 3 H 0.133 0.867 4 O -0.308 6.308 5 C -0.025 4.025 6 C -0.184 4.184 7 C -0.048 4.048 8 H 0.165 0.835 9 C -0.038 4.038 10 N -0.143 5.143 11 N -0.154 5.154 12 C -0.016 4.016 13 C -0.162 4.162 14 S 0.073 5.927 15 C -0.688 4.688 16 H 0.108 0.892 17 C -0.187 4.187 18 N -0.545 5.545 19 Si 0.822 3.178 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.181 1.181 23 O -0.102 6.102 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.256 9.569 -15.339 19.481 hybrid contribution -0.982 1.165 2.231 2.702 sum 6.274 10.734 -13.108 18.067 Atomic orbital electron populations 1.22285 0.94872 1.03404 1.02117 1.22742 0.94818 0.96414 0.82490 0.86710 1.88996 1.41019 1.68292 1.32499 1.23819 0.87360 0.97602 0.93683 1.23330 1.00316 0.96828 0.97957 1.21635 0.89061 0.99164 0.94976 0.83513 1.28210 0.99805 0.95892 0.79871 1.74294 1.02985 1.14312 1.22744 1.74417 1.22559 1.20729 0.97648 1.27190 0.85557 0.90367 0.98449 1.21705 1.01167 1.05494 0.87838 1.85219 1.49826 1.44458 1.13157 1.23094 1.22064 1.24271 0.99357 0.89247 1.26102 0.96792 0.93638 1.02123 1.70148 1.32030 1.20332 1.31994 0.84920 0.77628 0.79402 0.75883 1.19412 1.20172 1.18066 1.84788 1.39476 1.56114 1.29819 0.92670 0.90571 0.91753 0.88505 0.87358 0.86575 0.91601 0.86471 0.86085 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 8.34 71.98 0.60 -3.31 16 2 C 0.09 1.73 4.04 30.97 0.13 1.85 16 3 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 4 O -0.39 -7.92 11.21 -148.98 -1.67 -9.59 16 5 C 0.05 0.69 7.72 72.66 0.56 1.25 16 6 C -0.15 -2.48 6.70 31.89 0.21 -2.27 16 7 C -0.03 -0.55 3.58 -10.55 -0.04 -0.59 16 8 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 9 C 0.17 5.23 5.45 88.34 0.48 5.71 16 10 N -0.30 -10.74 9.55 -165.51 -1.58 -12.32 16 11 N -0.31 -12.43 12.22 -165.50 -2.02 -14.45 16 12 C 0.20 7.58 7.73 88.34 0.68 8.26 16 13 C -0.01 -0.53 6.30 71.24 0.45 -0.08 16 14 S -0.15 -7.98 21.42 -56.49 -1.21 -9.19 16 15 C -0.54 -29.43 9.50 67.95 0.65 -28.78 16 16 H 0.09 4.53 7.80 -2.91 -0.02 4.50 16 17 C 0.02 1.03 5.49 84.86 0.47 1.49 16 18 N -0.91 -53.30 13.22 21.65 0.29 -53.01 16 19 Si 1.00 41.91 29.55 68.60 2.03 43.94 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 23 O -0.22 -7.68 10.87 -3.59 -0.04 -7.72 16 24 H 0.05 1.29 7.62 -2.39 -0.02 1.27 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.89 5.77 -2.39 -0.01 1.87 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.07 1.51 7.67 -2.39 -0.02 1.50 16 31 H 0.12 4.15 8.14 -2.40 -0.02 4.13 16 32 H 0.12 4.57 8.14 -2.40 -0.02 4.55 16 33 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 Total: -1.00 -69.95 296.54 1.10 -68.85 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.12 Total: 9.95 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 4.19 Total: -16.46 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -3.32 Total: -79.78 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -1.71 Total: -17.31 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.21 Total: -9.19 kcal Total: -69.95 1.10 -68.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118194263.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.775 kcal (2) G-P(sol) polarization free energy of solvation -69.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds