Wall clock time and date at job start Mon Mar 30 2020 00:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00084 * 2 1 4 4 H 1.48492 * 109.47117 * 270.00042 * 3 2 1 5 5 H 1.48499 * 109.47040 * 29.99832 * 3 2 1 6 6 H 1.48495 * 109.47038 * 149.99810 * 3 2 1 7 7 C 1.37874 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00421 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99655 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46749 * 299.99163 * 9 7 2 11 11 O 1.42891 * 109.47565 * 59.99870 * 9 7 2 12 12 C 1.53009 * 109.46749 * 180.02562 * 9 7 2 13 13 S 1.81004 * 109.46865 * 179.97438 * 12 9 7 14 14 C 1.76200 * 99.99559 * 179.97438 * 13 12 9 15 15 N 1.32564 * 119.21956 * 179.97438 * 14 13 12 16 16 C 1.32257 * 120.73261 * 179.97438 * 15 14 13 17 17 C 1.38622 * 119.20443 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.71285 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47183 * 269.97582 * 18 17 16 20 20 O 1.42898 * 109.47319 * 180.02562 * 19 18 17 21 21 C 1.38623 * 118.56967 * 359.97438 * 17 16 15 22 22 N 1.32260 * 119.20341 * 0.02562 * 21 17 16 23 23 H 0.97003 * 119.99901 * 359.97438 * 1 2 3 24 24 H 0.96702 * 114.00118 * 60.00150 * 11 9 7 25 25 H 1.08995 * 109.46920 * 59.99739 * 12 9 7 26 26 H 1.09001 * 109.46370 * 299.99460 * 12 9 7 27 27 H 1.08002 * 120.39666 * 179.97438 * 16 15 14 28 28 H 1.08998 * 109.47476 * 29.97679 * 18 17 16 29 29 H 1.09003 * 109.47338 * 149.97936 * 18 17 16 30 30 H 1.08998 * 109.46993 * 300.00392 * 19 18 17 31 31 H 1.09003 * 109.46694 * 59.99960 * 19 18 17 32 32 H 0.96696 * 114.00213 * 180.02562 * 20 19 18 33 33 H 1.08000 * 120.39727 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8752 -0.6804 -0.8889 11 8 3.9875 -0.5201 1.1678 12 6 4.0216 -2.6366 0.0010 13 16 5.8316 -2.6365 0.0009 14 6 6.1375 -4.3717 0.0016 15 7 7.3892 -4.8082 0.0012 16 6 7.6531 -6.1042 0.0021 17 6 6.6024 -7.0084 0.0030 18 6 6.8642 -8.4925 0.0036 19 6 6.9515 -8.9955 -1.4388 20 8 7.1991 -10.4029 -1.4383 21 6 5.3058 -6.5180 0.0034 22 7 5.1106 -5.2099 0.0024 23 1 -0.4850 0.8401 0.0004 24 1 3.7019 -0.9234 1.9990 25 1 3.6585 -3.1501 -0.8892 26 1 3.6579 -3.1504 0.8908 27 1 8.6750 -6.4538 0.0014 28 1 7.8042 -8.6955 0.5167 29 1 6.0512 -9.0046 0.5183 30 1 6.0115 -8.7925 -1.9519 31 1 7.7644 -8.4833 -1.9536 32 1 7.2669 -10.7906 -2.3215 33 1 4.4652 -7.1960 0.0046 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118987240.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:48 Heat of formation + Delta-G solvation = -59.415437 kcal Electronic energy + Delta-G solvation = -17495.654798 eV Core-core repulsion = 14454.723964 eV Total energy + Delta-G solvation = -3040.930834 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.95745 -37.45340 -36.38315 -34.16676 -33.79462 -32.33745 -30.09393 -29.27341 -25.82169 -24.73145 -24.60392 -22.04373 -20.92626 -18.39072 -17.90617 -17.87822 -17.42613 -15.40401 -15.29645 -15.20576 -14.89333 -14.54764 -14.49715 -14.32053 -14.12684 -13.67125 -13.30843 -12.81476 -12.35691 -11.98102 -11.75304 -11.67134 -11.20851 -10.96943 -10.94387 -10.51650 -10.39604 -10.24415 -9.93788 -9.91339 -9.28879 -9.12011 -8.71901 -8.44906 -7.44523 -6.20167 -4.33639 0.65748 1.03584 1.54639 2.63879 3.35978 3.45785 3.51072 3.71322 3.84935 4.16699 4.43329 4.47669 4.48715 4.61078 4.72456 4.88787 4.97706 5.12547 5.13582 5.46946 5.60002 5.67259 5.77037 5.78446 5.88561 6.16175 6.52948 6.84550 7.11102 7.18643 7.40879 7.86525 8.19754 8.71944 8.90545 9.41970 10.89748 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.040895 B = 0.003645 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.515094 B = 7679.085076 C = 8170.996789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.087 3.913 3 Si 0.869 3.131 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.215 1.215 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.208 3.792 10 H 0.065 0.935 11 O -0.576 6.576 12 C -0.112 4.112 13 S 0.008 5.992 14 C 0.294 3.706 15 N -0.506 5.506 16 C 0.167 3.833 17 C -0.218 4.218 18 C -0.063 4.063 19 C 0.079 3.921 20 O -0.575 6.575 21 C 0.171 3.829 22 N -0.519 5.519 23 H 0.267 0.733 24 H 0.360 0.640 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.167 0.833 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.382 0.618 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.236 -16.440 -1.628 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.119 4.119 3 Si 0.695 3.305 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.138 1.138 7 C -0.600 4.600 8 H 0.094 0.906 9 C 0.148 3.852 10 H 0.083 0.917 11 O -0.382 6.382 12 C -0.261 4.261 13 S 0.247 5.753 14 C -0.080 4.080 15 N -0.222 5.222 16 C -0.003 4.003 17 C -0.228 4.228 18 C -0.102 4.102 19 C 0.001 3.999 20 O -0.381 6.381 21 C 0.001 3.999 22 N -0.236 5.236 23 H 0.076 0.924 24 H 0.207 0.793 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.185 0.815 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.229 0.771 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 14.913 -13.777 -1.425 20.352 hybrid contribution -0.811 -1.781 -0.371 1.991 sum 14.102 -15.557 -1.796 21.074 Atomic orbital electron populations 1.69938 1.06747 1.27687 1.48082 1.24964 0.94648 0.99928 0.92315 0.87048 0.83143 0.81740 0.78616 1.21178 1.22019 1.13774 1.21321 0.88622 0.95168 1.54869 0.90564 1.19629 0.94359 0.84764 0.86459 0.91750 1.86707 1.77690 1.57377 1.16424 1.24639 0.89452 1.05236 1.06763 1.86218 1.10901 0.90320 1.87850 1.25565 0.86787 1.02028 0.93571 1.68620 1.21429 1.16535 1.15646 1.23152 0.99649 0.87881 0.89631 1.21266 0.95851 0.97418 1.08238 1.20203 1.04107 0.89476 0.96412 1.22174 0.99656 0.81255 0.96768 1.86440 1.95421 1.22143 1.34124 1.23175 0.96010 0.91697 0.89035 1.68977 1.34495 1.04021 1.16084 0.92350 0.79327 0.88713 0.89124 0.81548 0.89857 0.89796 0.93359 0.93440 0.77098 0.81537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 3 Si 0.87 21.33 26.99 -169.99 -4.59 16.74 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.22 -5.16 5.30 56.52 0.30 -4.86 16 7 C -0.56 -15.14 9.34 -34.44 -0.32 -15.46 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.21 4.72 2.36 -27.88 -0.07 4.66 16 10 H 0.06 1.51 7.57 -51.93 -0.39 1.12 16 11 O -0.58 -12.69 9.74 -35.23 -0.34 -13.04 16 12 C -0.11 -2.20 4.44 37.16 0.17 -2.03 16 13 S 0.01 0.14 21.89 -107.50 -2.35 -2.22 16 14 C 0.29 4.95 7.85 -90.84 -0.71 4.24 16 15 N -0.51 -7.76 10.40 -13.44 -0.14 -7.90 16 16 C 0.17 1.90 11.00 -17.23 -0.19 1.71 16 17 C -0.22 -2.22 5.17 -104.34 -0.54 -2.76 16 18 C -0.06 -0.48 5.76 -27.88 -0.16 -0.64 16 19 C 0.08 0.56 7.03 37.16 0.26 0.82 16 20 O -0.58 -4.24 13.66 -35.23 -0.48 -4.72 16 21 C 0.17 2.07 11.00 -17.23 -0.19 1.88 16 22 N -0.52 -8.28 9.14 -13.44 -0.12 -8.40 16 23 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.36 7.02 9.04 45.56 0.41 7.43 16 25 H 0.09 1.89 8.11 -51.92 -0.42 1.47 16 26 H 0.09 1.78 8.11 -51.92 -0.42 1.36 16 27 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.38 1.16 9.12 45.56 0.42 1.58 16 33 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -33.15 301.56 -7.16 -40.31 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -2.60 Total: 5.71 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.85 Total: -5.24 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.51 Total: -42.09 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.82 Total: -17.75 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.59 Total: 16.74 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.35 Total: -2.22 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.15 -7.16 -40.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118987240.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.109 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds