Wall clock time and date at job start Mon Mar 30 2020 00:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00084 * 2 1 4 4 H 1.48492 * 109.47117 * 270.00042 * 3 2 1 5 5 H 1.48499 * 109.47040 * 29.99832 * 3 2 1 6 6 H 1.48495 * 109.47038 * 149.99810 * 3 2 1 7 7 C 1.37874 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00421 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99655 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46749 * 299.99163 * 9 7 2 11 11 O 1.42891 * 109.47565 * 59.99870 * 9 7 2 12 12 C 1.53009 * 109.46749 * 180.02562 * 9 7 2 13 13 S 1.81004 * 109.46865 * 179.97438 * 12 9 7 14 14 C 1.76200 * 99.99559 * 179.97438 * 13 12 9 15 15 N 1.32564 * 119.21956 * 179.97438 * 14 13 12 16 16 C 1.32257 * 120.73261 * 179.97438 * 15 14 13 17 17 C 1.38622 * 119.20443 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.71285 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47183 * 269.97582 * 18 17 16 20 20 O 1.42898 * 109.47319 * 180.02562 * 19 18 17 21 21 C 1.38623 * 118.56967 * 359.97438 * 17 16 15 22 22 N 1.32260 * 119.20341 * 0.02562 * 21 17 16 23 23 H 0.97003 * 119.99901 * 359.97438 * 1 2 3 24 24 H 0.96702 * 114.00118 * 60.00150 * 11 9 7 25 25 H 1.08995 * 109.46920 * 59.99739 * 12 9 7 26 26 H 1.09001 * 109.46370 * 299.99460 * 12 9 7 27 27 H 1.08002 * 120.39666 * 179.97438 * 16 15 14 28 28 H 1.08998 * 109.47476 * 29.97679 * 18 17 16 29 29 H 1.09003 * 109.47338 * 149.97936 * 18 17 16 30 30 H 1.08998 * 109.46993 * 300.00392 * 19 18 17 31 31 H 1.09003 * 109.46694 * 59.99960 * 19 18 17 32 32 H 0.96696 * 114.00213 * 180.02562 * 20 19 18 33 33 H 1.08000 * 120.39727 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8752 -0.6804 -0.8889 11 8 3.9875 -0.5201 1.1678 12 6 4.0216 -2.6366 0.0010 13 16 5.8316 -2.6365 0.0009 14 6 6.1375 -4.3717 0.0016 15 7 7.3892 -4.8082 0.0012 16 6 7.6531 -6.1042 0.0021 17 6 6.6024 -7.0084 0.0030 18 6 6.8642 -8.4925 0.0036 19 6 6.9515 -8.9955 -1.4388 20 8 7.1991 -10.4029 -1.4383 21 6 5.3058 -6.5180 0.0034 22 7 5.1106 -5.2099 0.0024 23 1 -0.4850 0.8401 0.0004 24 1 3.7019 -0.9234 1.9990 25 1 3.6585 -3.1501 -0.8892 26 1 3.6579 -3.1504 0.8908 27 1 8.6750 -6.4538 0.0014 28 1 7.8042 -8.6955 0.5167 29 1 6.0512 -9.0046 0.5183 30 1 6.0115 -8.7925 -1.9519 31 1 7.7644 -8.4833 -1.9536 32 1 7.2669 -10.7906 -2.3215 33 1 4.4652 -7.1960 0.0046 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118987240.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:47 Heat of formation + Delta-G solvation = -86.379608 kcal Electronic energy + Delta-G solvation = -17496.824052 eV Core-core repulsion = 14454.723964 eV Total energy + Delta-G solvation = -3042.100088 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.98373 -38.21155 -38.00755 -34.98869 -34.85750 -34.46543 -31.83185 -30.10813 -27.72419 -25.68326 -25.62000 -22.94045 -22.58185 -19.74020 -19.34218 -18.82287 -18.43488 -16.95482 -16.53006 -16.38248 -16.20444 -15.98815 -15.95256 -15.22331 -14.92592 -14.85791 -14.76262 -14.53142 -13.55786 -13.50120 -13.00960 -12.93258 -12.64901 -12.43485 -12.08346 -12.03633 -11.96105 -11.49089 -11.11057 -10.90448 -10.90166 -10.83942 -10.33761 -10.30595 -8.76397 -8.37632 -6.54329 -0.36570 0.06395 0.25393 1.19237 1.41176 1.46808 1.76048 2.42885 2.52421 2.99654 3.18757 3.25747 3.54890 3.61721 3.79380 3.90996 4.06204 4.10137 4.18052 4.30407 4.35557 4.57662 4.68039 4.89999 5.03614 5.08593 5.28643 5.29067 5.36353 5.84641 6.04881 6.57454 6.80245 6.87703 7.09950 7.27338 8.75982 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.040895 B = 0.003645 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.515094 B = 7679.085076 C = 8170.996789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.034 3.966 3 Si 0.934 3.066 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.042 0.958 9 C 0.216 3.784 10 H 0.062 0.938 11 O -0.576 6.576 12 C -0.096 4.096 13 S -0.001 6.001 14 C 0.273 3.727 15 N -0.524 5.524 16 C 0.161 3.839 17 C -0.187 4.187 18 C -0.060 4.060 19 C 0.081 3.919 20 O -0.591 6.591 21 C 0.156 3.844 22 N -0.545 5.545 23 H 0.269 0.731 24 H 0.372 0.628 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.206 0.794 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.400 0.600 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.549 -17.916 -1.581 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.167 4.167 3 Si 0.758 3.242 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.125 1.125 7 C -0.601 4.601 8 H 0.060 0.940 9 C 0.156 3.844 10 H 0.080 0.920 11 O -0.383 6.383 12 C -0.245 4.245 13 S 0.237 5.763 14 C -0.101 4.101 15 N -0.241 5.241 16 C -0.008 4.008 17 C -0.196 4.196 18 C -0.099 4.099 19 C 0.003 3.997 20 O -0.400 6.400 21 C -0.013 4.013 22 N -0.263 5.263 23 H 0.078 0.922 24 H 0.220 0.780 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.222 0.778 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.250 0.750 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 17.240 -15.313 -1.384 23.100 hybrid contribution -1.457 -1.636 -0.387 2.225 sum 15.783 -16.949 -1.770 23.228 Atomic orbital electron populations 1.70058 1.08441 1.28620 1.50230 1.25805 0.95269 1.03469 0.92146 0.86043 0.82100 0.77434 0.78631 1.20930 1.22170 1.12514 1.21595 0.91110 0.93699 1.53648 0.94018 1.19343 0.91622 0.86737 0.86669 0.91991 1.86633 1.77378 1.57525 1.16769 1.24160 0.91505 1.02820 1.06057 1.85970 1.08214 0.92785 1.89372 1.25154 0.87745 1.01203 0.96048 1.68567 1.20693 1.18671 1.16122 1.23839 1.01756 0.86638 0.88554 1.21519 0.94689 0.98817 1.04544 1.20246 1.05136 0.87211 0.97284 1.22112 1.00029 0.81428 0.96127 1.86385 1.95423 1.22155 1.36035 1.23721 0.97994 0.90739 0.88810 1.68908 1.34824 1.05708 1.16857 0.92196 0.77956 0.89625 0.89679 0.77776 0.88452 0.89101 0.93351 0.92723 0.75006 0.78964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.27 13.96 21.45 0.30 -56.97 16 2 C 0.03 1.93 5.47 84.65 0.46 2.39 16 3 Si 0.93 44.32 26.99 68.60 1.85 46.18 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.20 -9.19 5.30 99.48 0.53 -8.66 16 7 C -0.56 -30.99 9.34 25.60 0.24 -30.75 16 8 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 9 C 0.22 9.84 2.36 29.85 0.07 9.91 16 10 H 0.06 2.88 7.57 -2.39 -0.02 2.86 16 11 O -0.58 -24.77 9.74 -148.98 -1.45 -26.22 16 12 C -0.10 -3.82 4.44 71.99 0.32 -3.50 16 13 S 0.00 -0.05 21.89 -56.49 -1.24 -1.29 16 14 C 0.27 9.01 7.85 180.42 1.42 10.43 16 15 N -0.52 -15.22 10.40 -196.44 -2.04 -17.26 16 16 C 0.16 3.19 11.00 84.72 0.93 4.12 16 17 C -0.19 -3.25 5.17 -19.68 -0.10 -3.35 16 18 C -0.06 -0.69 5.76 29.85 0.17 -0.52 16 19 C 0.08 0.87 7.03 71.98 0.51 1.38 16 20 O -0.59 -6.87 13.66 -148.98 -2.03 -8.91 16 21 C 0.16 3.46 11.00 84.72 0.93 4.39 16 22 N -0.55 -17.03 9.14 -196.44 -1.80 -18.83 16 23 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 24 H 0.37 14.18 9.04 -74.06 -0.67 13.51 16 25 H 0.09 3.51 8.11 -2.40 -0.02 3.49 16 26 H 0.08 3.42 8.11 -2.39 -0.02 3.40 16 27 H 0.21 2.34 8.06 -2.91 -0.02 2.32 16 28 H 0.10 0.93 8.10 -2.39 -0.02 0.91 16 29 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.40 1.31 9.12 -74.06 -0.68 0.64 16 33 H 0.19 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -72.08 301.56 -1.84 -73.92 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.38 Total: 14.89 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 4.95 Total: -5.50 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -3.54 Total: -93.06 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -3.49 Total: -35.13 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.85 Total: 46.18 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.24 Total: -1.29 kcal Total: -72.08 -1.84 -73.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118987240.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.463 kcal (2) G-P(sol) polarization free energy of solvation -72.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds