Wall clock time and date at job start Mon Mar 30 2020 01:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.71059 * 125.44853 * 2 1 4 4 C 1.76075 * 90.36545 * 180.02562 * 3 2 1 5 5 C 1.47136 * 125.50519 * 179.97438 * 4 3 2 6 6 O 1.21647 * 119.99685 * 4.33532 * 5 4 3 7 7 N 1.34772 * 120.00380 * 184.33426 * 5 4 3 8 8 C 1.46495 * 119.99847 * 3.93240 * 7 5 4 9 9 C 1.46496 * 120.00317 * 183.93055 * 7 5 4 10 10 H 1.09001 * 109.46826 * 359.97438 * 9 7 5 11 11 C 1.53008 * 109.47195 * 240.00319 * 9 7 5 12 12 C 1.50693 * 109.47263 * 120.00213 * 9 7 5 13 13 H 1.07997 * 120.00425 * 34.90176 * 12 9 7 14 14 C 1.37885 * 120.00078 * 214.90387 * 12 9 7 15 15 N 1.31511 * 120.00083 * 184.83685 * 14 12 9 16 16 Si 1.86797 * 119.99601 * 4.83200 * 14 12 9 17 17 H 1.48507 * 109.47205 * 94.81037 * 16 14 12 18 18 H 1.48502 * 109.46969 * 214.80629 * 16 14 12 19 19 H 1.48494 * 109.47635 * 334.80911 * 16 14 12 20 20 N 1.30732 * 108.99328 * 359.68600 * 4 3 2 21 21 C 1.30855 * 115.87666 * 0.23479 * 20 4 3 22 22 O 1.36059 * 122.17066 * 179.97438 * 21 20 4 23 23 H 1.08998 * 109.47059 * 270.31691 * 1 2 3 24 24 H 1.09000 * 109.47540 * 30.32050 * 1 2 3 25 25 H 1.09002 * 109.47203 * 150.31980 * 1 2 3 26 26 H 1.09007 * 109.47333 * 84.15945 * 8 7 5 27 27 H 1.09001 * 109.47480 * 324.15892 * 8 7 5 28 28 H 1.09004 * 109.47445 * 204.16022 * 8 7 5 29 29 H 1.08996 * 109.46975 * 54.98638 * 11 9 7 30 30 H 1.08998 * 109.47131 * 174.98577 * 11 9 7 31 31 H 1.08994 * 109.46745 * 294.98220 * 11 9 7 32 32 H 0.97004 * 119.99587 * 180.02562 * 15 14 12 33 33 H 0.96702 * 113.99888 * 90.03338 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4990 1.3935 0.0000 4 6 3.9399 0.3815 -0.0008 5 6 5.3276 0.8705 -0.0017 6 8 5.5521 2.0634 0.0777 7 7 6.3500 -0.0031 -0.0904 8 6 6.0793 -1.4313 -0.2727 9 6 7.7320 0.4753 -0.0048 10 1 7.7342 1.5571 0.1289 11 6 8.4757 0.1196 -1.2938 12 6 8.4178 -0.1777 1.1674 13 1 8.1782 -1.1963 1.4345 14 6 9.3514 0.5254 1.8991 15 7 10.0190 -0.0729 2.8614 16 14 9.6681 2.3275 1.5233 17 1 8.8423 3.1732 2.4224 18 1 11.1053 2.6329 1.7386 19 1 9.3084 2.6093 0.1104 20 7 3.5776 -0.8746 0.0058 21 6 2.2881 -1.0970 0.0064 22 8 1.7700 -2.3551 0.0125 23 1 -0.3633 0.0057 1.0276 24 1 -0.3634 0.8871 -0.5188 25 1 -0.3634 -0.8928 -0.5089 26 1 5.9288 -1.6404 -1.3318 27 1 5.1822 -1.7049 0.2827 28 1 6.9255 -2.0114 0.0955 29 1 7.9302 0.5173 -2.1495 30 1 9.4757 0.5524 -1.2674 31 1 8.5510 -0.9641 -1.3825 32 1 10.6755 0.4219 3.3763 33 1 1.6194 -2.7142 0.8976 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123557515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:13 Heat of formation + Delta-G solvation = -13.551119 kcal Electronic energy + Delta-G solvation = -18657.830915 eV Core-core repulsion = 15618.888907 eV Total energy + Delta-G solvation = -3038.942008 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50447 -39.00348 -36.44754 -35.51470 -32.91706 -32.39662 -30.41690 -27.31195 -26.18595 -25.29693 -24.78440 -22.21069 -20.47497 -18.54477 -18.45335 -17.64967 -17.12770 -16.07994 -15.84488 -15.49760 -14.76568 -14.06235 -13.87006 -13.50943 -13.29930 -13.09691 -12.80362 -12.52252 -12.39442 -12.23797 -12.16878 -11.67429 -11.38686 -11.08215 -11.06415 -10.77354 -10.49856 -9.98861 -9.74106 -9.52824 -9.25052 -9.12410 -8.67356 -8.62405 -7.70561 -6.19340 -4.21796 0.20994 1.07234 1.57962 2.23817 3.28037 3.36714 3.38261 3.43815 3.62544 3.93406 4.36001 4.56281 4.74555 4.91962 5.20663 5.21776 5.38957 5.52376 5.73905 6.14054 6.20698 6.27594 6.42136 6.55766 6.74462 6.90218 7.04410 7.26896 7.36811 7.50152 7.58157 8.02747 8.42552 8.68407 8.84094 9.42093 10.92245 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030101 B = 0.005483 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.991930 B = 5105.771927 C = 5465.130123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.284 4.284 3 S 0.257 5.743 4 C 0.024 3.976 5 C 0.576 3.424 6 O -0.546 6.546 7 N -0.551 5.551 8 C 0.063 3.937 9 C 0.218 3.782 10 H 0.070 0.930 11 C -0.145 4.145 12 C -0.525 4.525 13 H 0.081 0.919 14 C 0.080 3.920 15 N -0.889 5.889 16 Si 0.872 3.128 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.258 1.258 20 N -0.434 5.434 21 C 0.234 3.766 22 O -0.462 6.462 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.027 0.973 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.267 0.733 33 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.634 -0.639 -5.485 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.408 4.408 3 S 0.512 5.488 4 C -0.252 4.252 5 C 0.359 3.641 6 O -0.426 6.426 7 N -0.280 5.280 8 C -0.080 4.080 9 C 0.118 3.882 10 H 0.088 0.912 11 C -0.204 4.204 12 C -0.563 4.563 13 H 0.099 0.901 14 C -0.124 4.124 15 N -0.525 5.525 16 Si 0.698 3.302 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.182 1.182 20 N -0.159 5.159 21 C 0.056 3.944 22 O -0.267 6.267 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -17.085 0.690 -5.910 18.091 hybrid contribution -0.109 -0.426 0.464 0.639 sum -17.194 0.264 -5.446 18.038 Atomic orbital electron populations 1.20143 0.86013 1.03684 1.02945 1.25699 1.03567 0.97948 1.13606 1.83983 0.95360 1.06470 1.63017 1.27789 0.99718 0.90461 1.07182 1.16817 0.81794 0.86216 0.79295 1.90805 1.83666 1.14902 1.53177 1.48291 1.06717 1.07507 1.65527 1.22296 1.04025 0.81039 1.00656 1.19593 0.76202 0.97630 0.94824 0.91235 1.22196 1.00034 1.01212 0.96964 1.21115 1.21892 1.01320 1.11982 0.90141 1.24956 0.95098 0.98175 0.94142 1.69891 1.24665 1.36810 1.21168 0.86904 0.77432 0.85709 0.80108 1.19826 1.21110 1.18247 1.66766 1.15686 1.18805 1.14628 1.17959 0.85810 0.86001 1.04651 1.84923 1.82061 1.26284 1.33482 0.90497 0.90972 0.89899 0.94049 0.87978 0.90469 0.95369 0.92401 0.92961 0.92324 0.75133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.21 36.00 0.37 -0.18 16 2 C -0.28 -3.36 6.38 -35.57 -0.23 -3.58 16 3 S 0.26 3.44 22.99 -107.50 -2.47 0.97 16 4 C 0.02 0.43 7.22 -14.41 -0.10 0.33 16 5 C 0.58 12.41 7.66 -12.65 -0.10 12.32 16 6 O -0.55 -13.03 16.27 5.24 0.09 -12.94 16 7 N -0.55 -12.20 2.75 -176.64 -0.49 -12.68 16 8 C 0.06 1.20 8.89 59.84 0.53 1.74 16 9 C 0.22 5.32 2.26 -69.08 -0.16 5.16 16 10 H 0.07 1.83 3.83 -51.93 -0.20 1.63 16 11 C -0.15 -3.11 9.10 37.16 0.34 -2.77 16 12 C -0.52 -14.46 8.69 -34.44 -0.30 -14.76 16 13 H 0.08 2.36 6.91 -52.49 -0.36 2.00 16 14 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 15 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 16 Si 0.87 21.80 27.31 -169.99 -4.64 17.16 16 17 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.26 -6.25 6.37 56.52 0.36 -5.89 16 20 N -0.43 -7.17 6.94 -11.61 -0.08 -7.25 16 21 C 0.23 3.22 7.74 -19.23 -0.15 3.08 16 22 O -0.46 -5.34 13.26 -19.93 -0.26 -5.60 16 23 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.62 7.98 -51.93 -0.41 0.21 16 26 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 27 H 0.10 1.88 4.99 -51.93 -0.26 1.62 16 28 H 0.08 1.52 6.63 -51.93 -0.34 1.18 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.05 7.84 -51.93 -0.41 0.65 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.39 2.70 9.07 45.56 0.41 3.11 16 LS Contribution 293.96 15.07 4.43 4.43 Total: -1.00 -32.82 293.96 -5.41 -38.23 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -2.86 Total: -0.06 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 0.11 Total: 3.52 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.21 Total: -45.69 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.18 Total: -18.55 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.64 Total: 17.16 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -2.47 Total: 0.97 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.82 -5.41 -38.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123557515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.678 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds