Wall clock time and date at job start Mon Mar 30 2020 01:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.71059 * 125.44853 * 2 1 4 4 C 1.76075 * 90.36545 * 180.02562 * 3 2 1 5 5 C 1.47136 * 125.50519 * 179.97438 * 4 3 2 6 6 O 1.21647 * 119.99685 * 4.33532 * 5 4 3 7 7 N 1.34772 * 120.00380 * 184.33426 * 5 4 3 8 8 C 1.46495 * 119.99847 * 3.93240 * 7 5 4 9 9 C 1.46496 * 120.00317 * 183.93055 * 7 5 4 10 10 H 1.09001 * 109.46826 * 359.97438 * 9 7 5 11 11 C 1.53008 * 109.47195 * 240.00319 * 9 7 5 12 12 C 1.50693 * 109.47263 * 120.00213 * 9 7 5 13 13 H 1.07997 * 120.00425 * 34.90176 * 12 9 7 14 14 C 1.37885 * 120.00078 * 214.90387 * 12 9 7 15 15 N 1.31511 * 120.00083 * 184.83685 * 14 12 9 16 16 Si 1.86797 * 119.99601 * 4.83200 * 14 12 9 17 17 H 1.48507 * 109.47205 * 94.81037 * 16 14 12 18 18 H 1.48502 * 109.46969 * 214.80629 * 16 14 12 19 19 H 1.48494 * 109.47635 * 334.80911 * 16 14 12 20 20 N 1.30732 * 108.99328 * 359.68600 * 4 3 2 21 21 C 1.30855 * 115.87666 * 0.23479 * 20 4 3 22 22 O 1.36059 * 122.17066 * 179.97438 * 21 20 4 23 23 H 1.08998 * 109.47059 * 270.31691 * 1 2 3 24 24 H 1.09000 * 109.47540 * 30.32050 * 1 2 3 25 25 H 1.09002 * 109.47203 * 150.31980 * 1 2 3 26 26 H 1.09007 * 109.47333 * 84.15945 * 8 7 5 27 27 H 1.09001 * 109.47480 * 324.15892 * 8 7 5 28 28 H 1.09004 * 109.47445 * 204.16022 * 8 7 5 29 29 H 1.08996 * 109.46975 * 54.98638 * 11 9 7 30 30 H 1.08998 * 109.47131 * 174.98577 * 11 9 7 31 31 H 1.08994 * 109.46745 * 294.98220 * 11 9 7 32 32 H 0.97004 * 119.99587 * 180.02562 * 15 14 12 33 33 H 0.96702 * 113.99888 * 90.03338 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4990 1.3935 0.0000 4 6 3.9399 0.3815 -0.0008 5 6 5.3276 0.8705 -0.0017 6 8 5.5521 2.0634 0.0777 7 7 6.3500 -0.0031 -0.0904 8 6 6.0793 -1.4313 -0.2727 9 6 7.7320 0.4753 -0.0048 10 1 7.7342 1.5571 0.1289 11 6 8.4757 0.1196 -1.2938 12 6 8.4178 -0.1777 1.1674 13 1 8.1782 -1.1963 1.4345 14 6 9.3514 0.5254 1.8991 15 7 10.0190 -0.0729 2.8614 16 14 9.6681 2.3275 1.5233 17 1 8.8423 3.1732 2.4224 18 1 11.1053 2.6329 1.7386 19 1 9.3084 2.6093 0.1104 20 7 3.5776 -0.8746 0.0058 21 6 2.2881 -1.0970 0.0064 22 8 1.7700 -2.3551 0.0125 23 1 -0.3633 0.0057 1.0276 24 1 -0.3634 0.8871 -0.5188 25 1 -0.3634 -0.8928 -0.5089 26 1 5.9288 -1.6404 -1.3318 27 1 5.1822 -1.7049 0.2827 28 1 6.9255 -2.0114 0.0955 29 1 7.9302 0.5173 -2.1495 30 1 9.4757 0.5524 -1.2674 31 1 8.5510 -0.9641 -1.3825 32 1 10.6755 0.4219 3.3763 33 1 1.6194 -2.7142 0.8976 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123557515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:13 Heat of formation + Delta-G solvation = -39.416640 kcal Electronic energy + Delta-G solvation = -18658.952528 eV Core-core repulsion = 15618.888907 eV Total energy + Delta-G solvation = -3040.063621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.68697 -40.52522 -37.46201 -37.29278 -34.74923 -33.55120 -32.17915 -28.54579 -27.70308 -27.29565 -25.86499 -23.63282 -21.93842 -20.06937 -19.65457 -19.18280 -18.57981 -17.54389 -17.38982 -16.92694 -16.38789 -15.83067 -15.05155 -14.71944 -14.51050 -14.41198 -14.18888 -14.14752 -13.99416 -13.58065 -13.19881 -13.08428 -13.02198 -12.90769 -12.69541 -12.36555 -12.02798 -11.79406 -11.54646 -11.24386 -10.79680 -10.55733 -10.46484 -9.79989 -9.37662 -8.37887 -6.43403 -0.94423 -0.04392 0.50982 1.09048 1.28854 1.34895 1.44628 1.96299 2.17199 2.28055 2.62823 3.03905 3.46863 3.82015 3.85733 4.39134 4.49957 4.57459 4.63352 4.68723 4.72767 4.78337 4.81314 5.08609 5.12911 5.26244 5.30329 5.48971 5.71910 6.06845 6.26081 6.54454 6.61704 6.63702 7.02864 7.24653 8.77395 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030101 B = 0.005483 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.991930 B = 5105.771927 C = 5465.130123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.252 4.252 3 S 0.310 5.690 4 C -0.035 4.035 5 C 0.575 3.425 6 O -0.581 6.581 7 N -0.567 5.567 8 C 0.072 3.928 9 C 0.218 3.782 10 H 0.053 0.947 11 C -0.139 4.139 12 C -0.524 4.524 13 H 0.051 0.949 14 C 0.031 3.969 15 N -0.932 5.932 16 Si 0.926 3.074 17 H -0.280 1.280 18 H -0.272 1.272 19 H -0.246 1.246 20 N -0.442 5.442 21 C 0.213 3.787 22 O -0.464 6.464 23 H 0.101 0.899 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.110 0.890 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.270 0.730 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.434 -0.140 -6.561 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.377 4.377 3 S 0.564 5.436 4 C -0.308 4.308 5 C 0.359 3.641 6 O -0.462 6.462 7 N -0.295 5.295 8 C -0.070 4.070 9 C 0.116 3.884 10 H 0.070 0.930 11 C -0.197 4.197 12 C -0.562 4.562 13 H 0.069 0.931 14 C -0.169 4.169 15 N -0.571 5.571 16 Si 0.750 3.250 17 H -0.206 1.206 18 H -0.198 1.198 19 H -0.170 1.170 20 N -0.168 5.168 21 C 0.035 3.965 22 O -0.272 6.272 23 H 0.119 0.881 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -19.888 1.160 -6.994 21.113 hybrid contribution 0.470 -0.672 0.808 1.151 sum -19.418 0.487 -6.186 20.385 Atomic orbital electron populations 1.20420 0.82721 1.05137 1.04856 1.26307 1.05453 0.96698 1.09197 1.83776 0.92873 1.05826 1.61138 1.26866 0.99204 0.92017 1.12706 1.17193 0.83294 0.85653 0.77911 1.90755 1.84771 1.16160 1.54556 1.48182 1.06242 1.08717 1.66391 1.22306 1.03599 0.79354 1.01759 1.19405 0.77755 0.96288 0.94934 0.92956 1.22073 0.99806 1.01810 0.96023 1.21293 1.21794 1.00196 1.12913 0.93114 1.25652 0.95154 1.01941 0.94183 1.69996 1.25937 1.38450 1.22731 0.86048 0.77709 0.80915 0.80332 1.20576 1.19760 1.16984 1.66577 1.17645 1.18833 1.13795 1.18032 0.85183 0.87308 1.06014 1.84904 1.81534 1.25379 1.35405 0.88098 0.89101 0.88816 0.92364 0.87221 0.92016 0.93412 0.92369 0.92267 0.92091 0.72873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.21 71.23 0.73 -0.06 16 2 C -0.25 -5.05 6.38 24.87 0.16 -4.90 16 3 S 0.31 7.56 22.99 -56.49 -1.30 6.26 16 4 C -0.04 -1.22 7.22 87.19 0.63 -0.59 16 5 C 0.57 24.96 7.66 86.58 0.66 25.62 16 6 O -0.58 -28.02 16.27 -4.18 -0.07 -28.09 16 7 N -0.57 -25.39 2.75 -831.01 -2.29 -27.68 16 8 C 0.07 2.78 8.89 127.77 1.14 3.92 16 9 C 0.22 10.76 2.26 44.25 0.10 10.86 16 10 H 0.05 2.77 3.83 -2.39 -0.01 2.76 16 11 C -0.14 -5.85 9.10 71.98 0.66 -5.19 16 12 C -0.52 -29.70 8.69 25.60 0.22 -29.48 16 13 H 0.05 3.11 6.91 -2.91 -0.02 3.09 16 14 C 0.03 1.78 5.47 84.66 0.46 2.24 16 15 N -0.93 -57.22 13.96 21.45 0.30 -56.92 16 16 Si 0.93 45.56 27.31 68.60 1.87 47.44 16 17 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 18 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 19 H -0.25 -11.54 6.37 99.48 0.63 -10.90 16 20 N -0.44 -14.11 6.94 -303.98 -2.11 -16.21 16 21 C 0.21 5.33 7.74 84.02 0.65 5.98 16 22 O -0.46 -9.41 13.26 -94.22 -1.25 -10.65 16 23 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.09 0.94 7.98 -2.39 -0.02 0.92 16 26 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.11 4.07 4.99 -2.39 -0.01 4.06 16 28 H 0.06 2.52 6.63 -2.39 -0.02 2.50 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.06 2.37 7.84 -2.39 -0.02 2.35 16 32 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 33 H 0.41 4.47 9.07 -74.06 -0.67 3.80 16 Total: -1.00 -72.81 293.96 0.98 -71.83 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.41 Total: 5.62 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 5.41 Total: 8.41 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -4.10 Total: -100.81 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -1.32 Total: -38.75 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.87 Total: 47.44 kcal Atomic # 16 Polarization: 7.56 SS G_CDS: -1.30 Total: 6.26 kcal Total: -72.81 0.98 -71.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123557515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.415 kcal (2) G-P(sol) polarization free energy of solvation -72.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds