Wall clock time and date at job start Mon Mar 30 2020 02:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 113.99849 * 2 1 4 4 C 1.52998 * 109.47219 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47493 * 66.09215 * 4 3 2 6 6 C 1.37098 * 120.00037 * 266.41965 * 5 4 3 7 7 H 1.07993 * 119.99999 * 142.30939 * 6 5 4 8 8 C 1.38961 * 119.99613 * 322.31378 * 6 5 4 9 9 N 1.31405 * 119.99430 * 157.72437 * 8 6 5 10 10 Si 1.86798 * 120.00202 * 337.72188 * 8 6 5 11 11 H 1.48496 * 109.46960 * 95.34364 * 10 8 6 12 12 H 1.48493 * 109.46981 * 215.34602 * 10 8 6 13 13 H 1.48501 * 109.47173 * 335.34659 * 10 8 6 14 14 C 1.34774 * 119.99620 * 86.68933 * 5 4 3 15 15 O 1.21285 * 120.00397 * 359.72766 * 14 5 4 16 16 C 1.50704 * 119.99454 * 179.72512 * 14 5 4 17 17 C 1.50702 * 109.46918 * 179.97438 * 16 14 5 18 18 C 1.33643 * 126.03536 * 90.00048 * 17 16 14 19 19 N 1.31782 * 114.49765 * 179.97438 * 18 17 16 20 20 C 1.29024 * 117.13101 * 0.02562 * 19 18 17 21 21 S 1.70986 * 110.16252 * 359.71826 * 20 19 18 22 22 H 1.09007 * 109.47482 * 300.00109 * 1 2 3 23 23 H 1.09000 * 109.47617 * 60.00458 * 1 2 3 24 24 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47812 * 59.99744 * 3 2 1 26 26 H 1.09007 * 109.47077 * 299.99631 * 3 2 1 27 27 H 1.09006 * 109.46862 * 306.09288 * 4 3 2 28 28 H 1.08998 * 109.47613 * 186.09846 * 4 3 2 29 29 H 0.97007 * 119.99564 * 179.97438 * 9 8 6 30 30 H 1.08992 * 109.47239 * 300.00060 * 16 14 5 31 31 H 1.09002 * 109.47275 * 60.00517 * 16 14 5 32 32 H 1.08004 * 122.75001 * 0.02562 * 18 17 16 33 33 H 1.07997 * 124.92162 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9776 0.5883 -1.2636 6 6 4.1697 -0.7662 -1.3519 7 1 3.8983 -1.2923 -2.2552 8 6 4.7135 -1.4622 -0.2791 9 7 4.5070 -2.7546 -0.1620 10 14 5.7379 -0.5606 0.9964 11 1 4.8767 -0.1820 2.1453 12 1 6.8321 -1.4464 1.4686 13 1 6.3193 0.6636 0.3890 14 6 4.2008 1.3721 -2.3371 15 8 4.0308 2.5704 -2.2590 16 6 4.6616 0.7593 -3.6345 17 6 4.8355 1.8425 -4.6678 18 6 5.9550 2.5341 -4.9011 19 7 5.8532 3.4309 -5.8613 20 6 4.7101 3.5348 -6.4506 21 16 3.6009 2.4157 -5.7866 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6885 1.8464 0.8899 26 1 1.6885 1.8463 -0.8901 27 1 3.8501 0.5523 0.8296 28 1 3.9783 2.1746 0.1085 29 1 4.8869 -3.2406 0.5867 30 1 5.6123 0.2498 -3.4782 31 1 3.9179 0.0422 -3.9821 32 1 6.8685 2.3707 -4.3486 33 1 4.4874 4.2254 -7.2504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123898181.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:19 Heat of formation + Delta-G solvation = -18.054078 kcal Electronic energy + Delta-G solvation = -18797.083878 eV Core-core repulsion = 15757.946607 eV Total energy + Delta-G solvation = -3039.137271 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.48641 -38.76099 -37.07913 -34.87999 -32.33098 -31.97542 -29.58200 -27.24660 -25.84514 -24.87872 -24.05742 -22.32913 -19.88509 -19.04695 -17.86472 -16.90847 -16.48117 -15.87469 -15.49880 -15.18776 -14.71424 -14.49207 -14.09219 -13.96171 -13.59581 -13.53169 -12.69469 -12.63433 -12.31456 -12.08267 -11.73064 -11.58682 -11.35663 -10.93020 -10.81027 -10.72470 -10.16721 -9.95886 -9.39241 -9.26690 -9.10945 -8.98730 -8.74046 -8.43053 -7.85078 -6.46919 -4.04686 1.04634 1.68441 2.07227 3.04030 3.16638 3.20463 3.26769 3.63289 4.11956 4.28426 4.42421 4.61773 4.99068 5.31417 5.49167 5.57036 5.60666 5.66969 5.75995 5.82878 5.92194 5.99780 6.04738 6.21867 6.25265 6.28204 6.44060 6.50679 7.29838 7.77072 7.97979 8.05415 8.21740 8.93894 9.31030 9.62583 10.63877 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.006545 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.785719 B = 4277.161495 C = 4969.689430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.055 3.945 4 C 0.102 3.898 5 N -0.451 5.451 6 C -0.338 4.338 7 H 0.103 0.897 8 C 0.076 3.924 9 N -0.851 5.851 10 Si 0.870 3.130 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.478 3.522 15 O -0.595 6.595 16 C -0.048 4.048 17 C -0.163 4.163 18 C 0.024 3.976 19 N -0.469 5.469 20 C -0.003 4.003 21 S 0.117 5.883 22 H 0.030 0.970 23 H 0.032 0.968 24 H 0.081 0.919 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.274 0.726 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.172 0.828 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 5.953 -5.280 8.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.023 4.023 4 C -0.022 4.022 5 N -0.171 5.171 6 C -0.465 4.465 7 H 0.120 0.880 8 C -0.132 4.132 9 N -0.486 5.486 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.267 3.733 15 O -0.481 6.481 16 C -0.090 4.090 17 C -0.285 4.285 18 C -0.126 4.126 19 N -0.183 5.183 20 C -0.301 4.301 21 S 0.368 5.632 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.116 0.884 32 H 0.189 0.811 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.020 6.306 -5.534 9.303 hybrid contribution 0.960 0.339 1.335 1.679 sum -3.060 6.645 -4.199 8.435 Atomic orbital electron populations 1.22660 0.82984 1.02106 0.98760 1.88206 1.17725 1.26667 1.95022 1.22853 0.94926 0.85161 0.99315 1.21727 0.92261 0.99135 0.89029 1.43617 1.57537 1.07528 1.08386 1.18949 1.42885 0.79883 1.04804 0.87955 1.25236 0.95808 0.95080 0.97101 1.69779 1.40091 1.08248 1.30473 0.87061 0.80689 0.80628 0.81909 1.20128 1.21374 1.18594 1.20129 0.80967 0.86160 0.86076 1.90566 1.57395 1.14958 1.85172 1.19888 1.05017 0.94046 0.90086 1.25661 0.95560 1.04597 1.02638 1.21618 0.99679 0.94096 0.97221 1.66249 1.23607 1.19657 1.08745 1.28138 0.92086 1.04424 1.05402 1.83855 1.17873 1.32422 1.29049 0.95178 0.94899 0.90055 0.93942 0.93284 0.90489 0.89962 0.91579 0.86800 0.88356 0.81069 0.79069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.57 10.39 -35.23 -0.37 -7.94 16 3 C 0.06 1.09 6.26 37.16 0.23 1.32 16 4 C 0.10 2.23 4.45 -4.04 -0.02 2.21 16 5 N -0.45 -10.53 2.15 -114.81 -0.25 -10.77 16 6 C -0.34 -8.50 8.78 -14.93 -0.13 -8.63 16 7 H 0.10 2.67 7.24 -52.49 -0.38 2.29 16 8 C 0.08 1.96 5.28 -17.47 -0.09 1.87 16 9 N -0.85 -23.09 13.96 55.50 0.77 -22.31 16 10 Si 0.87 20.02 25.05 -169.99 -4.26 15.76 16 11 H -0.27 -6.16 6.67 56.52 0.38 -5.79 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 13 H -0.26 -6.05 7.11 56.52 0.40 -5.64 16 14 C 0.48 10.65 7.61 -10.98 -0.08 10.57 16 15 O -0.60 -14.32 15.67 5.55 0.09 -14.23 16 16 C -0.05 -0.90 4.93 -29.03 -0.14 -1.04 16 17 C -0.16 -2.84 5.09 -35.92 -0.18 -3.02 16 18 C 0.02 0.41 11.25 -19.18 -0.22 0.19 16 19 N -0.47 -7.83 10.54 -15.75 -0.17 -7.99 16 20 C 0.00 -0.04 12.23 51.58 0.63 0.59 16 21 S 0.12 1.72 23.22 -107.50 -2.50 -0.78 16 22 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16 27 H 0.08 1.75 3.47 -51.93 -0.18 1.57 16 28 H 0.08 1.73 7.53 -51.93 -0.39 1.33 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.11 2.02 8.10 -51.93 -0.42 1.60 16 31 H 0.10 1.76 7.67 -51.93 -0.40 1.36 16 32 H 0.17 2.70 8.06 -52.48 -0.42 2.28 16 33 H 0.19 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -30.52 297.90 -4.96 -35.49 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.89 Total: 2.62 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 1.11 Total: 5.67 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.36 Total: -41.08 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.28 Total: -22.17 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.26 Total: 15.76 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.50 Total: -0.78 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.52 -4.96 -35.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123898181.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.432 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds