Wall clock time and date at job start Mon Mar 30 2020 02:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 113.99849 * 2 1 4 4 C 1.52998 * 109.47219 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47493 * 66.09215 * 4 3 2 6 6 C 1.37098 * 120.00037 * 266.41965 * 5 4 3 7 7 H 1.07993 * 119.99999 * 142.30939 * 6 5 4 8 8 C 1.38961 * 119.99613 * 322.31378 * 6 5 4 9 9 N 1.31405 * 119.99430 * 157.72437 * 8 6 5 10 10 Si 1.86798 * 120.00202 * 337.72188 * 8 6 5 11 11 H 1.48496 * 109.46960 * 95.34364 * 10 8 6 12 12 H 1.48493 * 109.46981 * 215.34602 * 10 8 6 13 13 H 1.48501 * 109.47173 * 335.34659 * 10 8 6 14 14 C 1.34774 * 119.99620 * 86.68933 * 5 4 3 15 15 O 1.21285 * 120.00397 * 359.72766 * 14 5 4 16 16 C 1.50704 * 119.99454 * 179.72512 * 14 5 4 17 17 C 1.50702 * 109.46918 * 179.97438 * 16 14 5 18 18 C 1.33643 * 126.03536 * 90.00048 * 17 16 14 19 19 N 1.31782 * 114.49765 * 179.97438 * 18 17 16 20 20 C 1.29024 * 117.13101 * 0.02562 * 19 18 17 21 21 S 1.70986 * 110.16252 * 359.71826 * 20 19 18 22 22 H 1.09007 * 109.47482 * 300.00109 * 1 2 3 23 23 H 1.09000 * 109.47617 * 60.00458 * 1 2 3 24 24 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47812 * 59.99744 * 3 2 1 26 26 H 1.09007 * 109.47077 * 299.99631 * 3 2 1 27 27 H 1.09006 * 109.46862 * 306.09288 * 4 3 2 28 28 H 1.08998 * 109.47613 * 186.09846 * 4 3 2 29 29 H 0.97007 * 119.99564 * 179.97438 * 9 8 6 30 30 H 1.08992 * 109.47239 * 300.00060 * 16 14 5 31 31 H 1.09002 * 109.47275 * 60.00517 * 16 14 5 32 32 H 1.08004 * 122.75001 * 0.02562 * 18 17 16 33 33 H 1.07997 * 124.92162 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9776 0.5883 -1.2636 6 6 4.1697 -0.7662 -1.3519 7 1 3.8983 -1.2923 -2.2552 8 6 4.7135 -1.4622 -0.2791 9 7 4.5070 -2.7546 -0.1620 10 14 5.7379 -0.5606 0.9964 11 1 4.8767 -0.1820 2.1453 12 1 6.8321 -1.4464 1.4686 13 1 6.3193 0.6636 0.3890 14 6 4.2008 1.3721 -2.3371 15 8 4.0308 2.5704 -2.2590 16 6 4.6616 0.7593 -3.6345 17 6 4.8355 1.8425 -4.6678 18 6 5.9550 2.5341 -4.9011 19 7 5.8532 3.4309 -5.8613 20 6 4.7101 3.5348 -6.4506 21 16 3.6009 2.4157 -5.7866 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6885 1.8464 0.8899 26 1 1.6885 1.8463 -0.8901 27 1 3.8501 0.5523 0.8296 28 1 3.9783 2.1746 0.1085 29 1 4.8869 -3.2406 0.5867 30 1 5.6123 0.2498 -3.4782 31 1 3.9179 0.0422 -3.9821 32 1 6.8685 2.3707 -4.3486 33 1 4.4874 4.2254 -7.2504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123898181.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:19 Heat of formation + Delta-G solvation = -39.008944 kcal Electronic energy + Delta-G solvation = -18797.992549 eV Core-core repulsion = 15757.946607 eV Total energy + Delta-G solvation = -3040.045942 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.00198 -40.24494 -38.61378 -36.68892 -33.98083 -33.70438 -31.15290 -28.61034 -27.24674 -26.65370 -25.44954 -23.89810 -21.27662 -20.71957 -19.31049 -18.49762 -18.18576 -17.56273 -17.03762 -16.50458 -16.37490 -16.08004 -15.60292 -15.48507 -15.04980 -14.80746 -14.51325 -14.23805 -13.74686 -13.58663 -13.39614 -13.12932 -12.95031 -12.59829 -12.42325 -12.09049 -11.96410 -11.72411 -11.09473 -10.67862 -10.59640 -10.48478 -10.10823 -9.80057 -9.72084 -8.44546 -6.03232 -0.17177 0.49025 0.86992 1.21228 1.33772 1.43333 1.86293 1.90385 2.22710 2.60769 2.90591 3.14187 3.50250 3.93508 4.04008 4.13424 4.22721 4.32588 4.36862 4.43515 4.52839 4.55133 4.61689 4.75183 4.80825 4.84445 4.88433 5.23334 5.44545 6.10546 6.26489 6.38195 6.76883 7.01521 7.43395 7.77658 8.69672 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.006545 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.785719 B = 4277.161495 C = 4969.689430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.061 3.939 4 C 0.092 3.908 5 N -0.462 5.462 6 C -0.329 4.329 7 H 0.084 0.916 8 C 0.039 3.961 9 N -0.890 5.890 10 Si 0.918 3.082 11 H -0.265 1.265 12 H -0.285 1.285 13 H -0.264 1.264 14 C 0.477 3.523 15 O -0.612 6.612 16 C -0.040 4.040 17 C -0.198 4.198 18 C 0.021 3.979 19 N -0.497 5.497 20 C 0.016 3.984 21 S 0.142 5.858 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.277 0.723 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.175 0.825 33 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.046 7.418 -5.711 10.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.016 4.016 4 C -0.031 4.031 5 N -0.182 5.182 6 C -0.456 4.456 7 H 0.101 0.899 8 C -0.166 4.166 9 N -0.527 5.527 10 Si 0.744 3.256 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.189 1.189 14 C 0.267 3.733 15 O -0.498 6.498 16 C -0.082 4.082 17 C -0.320 4.320 18 C -0.129 4.129 19 N -0.211 5.211 20 C -0.281 4.281 21 S 0.394 5.606 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.119 0.881 32 H 0.192 0.808 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.596 7.776 -5.962 10.823 hybrid contribution 1.044 -0.031 1.351 1.708 sum -3.552 7.745 -4.611 9.688 Atomic orbital electron populations 1.22867 0.80460 1.03190 1.00416 1.88137 1.20639 1.27541 1.95345 1.22778 0.93315 0.85042 1.00501 1.21859 0.94189 0.98965 0.88071 1.43717 1.58205 1.06964 1.09308 1.18796 1.42184 0.80612 1.04055 0.89850 1.25715 0.96565 0.95500 0.98781 1.69843 1.41684 1.09487 1.31674 0.86289 0.79496 0.79426 0.80390 1.19109 1.21160 1.18881 1.20680 0.79897 0.85964 0.86787 1.90539 1.57907 1.15715 1.85634 1.19748 1.05033 0.94514 0.88884 1.25574 0.97092 1.05420 1.03903 1.21790 0.99862 0.93964 0.97292 1.66316 1.24906 1.20308 1.09523 1.28918 0.90878 1.03514 1.04802 1.83744 1.16884 1.32135 1.27840 0.92662 0.93978 0.89379 0.90705 0.93939 0.91436 0.89358 0.91349 0.86508 0.88053 0.80792 0.74869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.05 16 2 O -0.40 -16.43 10.39 -148.98 -1.55 -17.98 16 3 C 0.06 2.32 6.26 71.98 0.45 2.77 16 4 C 0.09 3.95 4.45 86.38 0.38 4.34 16 5 N -0.46 -21.49 2.15 -635.53 -1.36 -22.85 16 6 C -0.33 -16.70 8.78 84.04 0.74 -15.96 16 7 H 0.08 4.47 7.24 -2.91 -0.02 4.45 16 8 C 0.04 2.04 5.28 84.93 0.45 2.49 16 9 N -0.89 -48.91 13.96 21.67 0.30 -48.61 16 10 Si 0.92 41.15 25.05 68.60 1.72 42.87 16 11 H -0.26 -11.38 6.67 99.48 0.66 -10.71 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 13 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 14 C 0.48 21.13 7.61 87.66 0.67 21.80 16 15 O -0.61 -29.00 15.67 -3.04 -0.05 -29.05 16 16 C -0.04 -1.49 4.93 29.10 0.14 -1.35 16 17 C -0.20 -6.74 5.09 24.64 0.13 -6.62 16 18 C 0.02 0.70 11.25 83.66 0.94 1.64 16 19 N -0.50 -15.61 10.54 -203.74 -2.15 -17.76 16 20 C 0.02 0.40 12.23 130.65 1.60 2.00 16 21 S 0.14 3.89 23.22 -56.49 -1.31 2.58 16 22 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 23 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.07 3.01 3.47 -2.38 -0.01 3.00 16 28 H 0.09 3.62 7.53 -2.39 -0.02 3.60 16 29 H 0.28 14.26 8.31 -92.70 -0.77 13.49 16 30 H 0.12 4.20 8.10 -2.39 -0.02 4.18 16 31 H 0.10 3.66 7.67 -2.39 -0.02 3.64 16 32 H 0.18 5.45 8.06 -2.91 -0.02 5.43 16 33 H 0.24 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -64.55 297.90 3.42 -61.13 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.08 Total: 16.50 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 6.74 Total: 13.17 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -3.21 Total: -89.22 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -1.60 Total: -47.03 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.72 Total: 42.87 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.31 Total: 2.58 kcal Total: -64.55 3.42 -61.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123898181.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.118 kcal (2) G-P(sol) polarization free energy of solvation -64.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds