Wall clock time and date at job start Mon Mar 30 2020 02:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36215 * 117.00128 * 2 1 4 4 C 1.34082 * 122.50096 * 359.97438 * 3 2 1 5 5 S 1.70601 * 110.97404 * 179.74252 * 4 3 2 6 6 C 1.75805 * 91.62141 * 0.35615 * 5 4 3 7 7 C 1.46546 * 125.42700 * 179.90893 * 6 5 4 8 8 O 1.21718 * 120.00246 * 179.69345 * 7 6 5 9 9 N 1.34777 * 119.99894 * 359.69946 * 7 6 5 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47030 * 180.02562 * 11 10 9 13 13 C 1.36943 * 119.99943 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99502 * 359.97438 * 13 12 11 15 15 C 1.38805 * 120.00174 * 179.97438 * 13 12 11 16 16 N 1.31625 * 119.99705 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00114 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47317 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47320 * 120.00479 * 17 15 13 20 20 H 1.48507 * 109.47345 * 240.00034 * 17 15 13 21 21 C 1.36745 * 109.14881 * 359.64792 * 6 5 4 22 22 H 1.08998 * 109.47516 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46680 * 299.99914 * 1 2 3 24 24 H 1.09000 * 109.46980 * 59.99532 * 1 2 3 25 25 H 1.08002 * 124.50722 * 0.02562 * 4 3 2 26 26 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 27 27 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 28 28 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 29 29 H 1.09004 * 109.46930 * 299.99770 * 11 10 9 30 30 H 1.09004 * 109.47059 * 59.99372 * 11 10 9 31 31 H 0.96999 * 120.00085 * 359.97438 * 12 11 10 32 32 H 0.97000 * 119.99481 * 180.02562 * 16 15 13 33 33 H 1.07996 * 123.36943 * 180.30036 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.3669 2.3690 -0.0005 5 16 2.4296 3.7036 0.0068 6 6 3.8353 2.6479 -0.0003 7 6 5.2317 3.0926 -0.0004 8 8 6.1315 2.2730 0.0000 9 7 5.5195 4.4093 -0.0008 10 6 6.9155 4.8539 -0.0014 11 6 6.9636 6.3832 -0.0024 12 7 8.3595 6.8278 -0.0037 13 6 8.6520 8.1656 -0.0042 14 1 7.8535 8.8929 -0.0041 15 6 9.9746 8.5869 -0.0049 16 7 10.9476 7.7005 -0.0055 17 14 10.3735 10.4118 -0.0063 18 1 9.1115 11.1944 -0.0060 19 1 11.1635 10.7467 1.2056 20 1 11.1628 10.7450 -1.2193 21 6 3.4183 1.3456 0.0001 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 0.2895 2.4445 -0.0006 26 1 4.8025 5.0625 -0.0014 27 1 7.4180 4.4749 0.8885 28 1 7.4173 4.4744 -0.8915 29 1 6.4613 6.7619 -0.8926 30 1 6.4616 6.7631 0.8874 31 1 9.0766 6.1746 -0.0034 32 1 11.8718 7.9949 -0.0056 33 1 4.0961 0.5048 0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132245866.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:04 Heat of formation + Delta-G solvation = -25.543426 kcal Electronic energy + Delta-G solvation = -17208.521015 eV Core-core repulsion = 14169.058982 eV Total energy + Delta-G solvation = -3039.462033 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.25624 -39.43697 -36.23936 -35.58375 -33.89840 -31.36216 -29.86741 -28.34358 -27.64155 -24.75806 -23.36257 -21.64305 -21.28918 -19.68213 -18.81618 -17.44298 -17.28194 -16.20854 -16.18838 -15.72622 -15.41636 -14.82460 -14.58229 -13.96420 -13.91473 -13.40992 -13.18135 -13.04864 -13.03637 -12.85553 -12.04255 -11.52935 -11.30751 -11.28818 -11.13037 -10.83535 -10.83221 -10.17635 -10.05119 -9.76936 -9.25059 -9.02520 -8.87634 -8.33669 -7.00557 -5.80432 -3.11359 0.20573 1.14783 1.57546 2.14431 2.82582 3.12795 3.27932 3.41902 3.47344 3.49758 4.51917 4.58068 4.62060 4.76417 4.78755 4.94001 5.08253 5.35598 5.49008 5.50813 5.65122 5.74723 5.78038 5.92398 6.10697 6.39810 6.67388 6.68106 6.86615 7.45647 7.65736 8.13709 8.37069 9.48499 10.02728 10.37530 11.42180 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.058131 B = 0.002877 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.555109 B = 9728.493547 C =10184.295550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.305 6.305 3 C 0.104 3.896 4 C -0.344 4.344 5 S 0.229 5.771 6 C -0.231 4.231 7 C 0.586 3.414 8 O -0.524 6.524 9 N -0.716 5.716 10 C 0.111 3.889 11 C 0.144 3.856 12 N -0.729 5.729 13 C -0.244 4.244 14 H 0.073 0.927 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.910 3.090 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.071 4.071 22 H 0.101 0.899 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.171 0.829 26 H 0.397 0.603 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.387 0.613 32 H 0.256 0.744 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.011 -12.207 0.026 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.219 6.219 3 C 0.047 3.953 4 C -0.482 4.482 5 S 0.495 5.505 6 C -0.352 4.352 7 C 0.371 3.629 8 O -0.401 6.401 9 N -0.367 5.367 10 C -0.012 4.012 11 C 0.016 3.984 12 N -0.374 5.374 13 C -0.375 4.375 14 H 0.091 0.909 15 C -0.209 4.209 16 N -0.578 5.578 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.106 4.106 22 H 0.119 0.881 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.188 0.812 26 H 0.231 0.769 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.220 0.780 32 H 0.066 0.934 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -23.502 -11.209 0.034 26.038 hybrid contribution -0.132 -0.374 -0.007 0.397 sum -23.634 -11.583 0.027 26.320 Atomic orbital electron populations 1.23047 0.78219 1.04031 1.01278 1.86127 1.21263 1.25137 1.89423 1.17555 0.91543 0.84769 1.01463 1.25056 1.05742 0.97493 1.19880 1.82947 0.92742 1.06326 1.68462 1.24520 0.97854 0.97492 1.15374 1.16817 0.86117 0.82811 0.77180 1.90865 1.46636 1.52950 1.49693 1.45788 1.10016 1.06123 1.74776 1.21668 0.80027 0.96475 1.03036 1.20765 0.89560 0.89543 0.98568 1.42189 1.00217 1.05332 1.89708 1.19234 0.91707 0.83164 1.43347 0.90944 1.24790 0.95599 0.97835 1.02664 1.69683 0.98783 1.32121 1.57229 0.86072 0.77934 0.84632 0.77237 1.20503 1.21773 1.21765 1.19965 0.92868 0.97005 1.00736 0.88091 0.92731 0.92734 0.81177 0.76875 0.90797 0.90802 0.95669 0.95671 0.77951 0.93390 0.81923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.93 101.05 1.00 1.17 16 2 O -0.31 -3.01 10.56 -20.43 -0.22 -3.22 16 3 C 0.10 1.08 6.61 -41.23 -0.27 0.81 16 4 C -0.34 -2.96 9.81 29.27 0.29 -2.67 16 5 S 0.23 2.04 22.15 -107.50 -2.38 -0.34 16 6 C -0.23 -2.84 6.45 -36.77 -0.24 -3.08 16 7 C 0.59 8.92 7.78 -12.91 -0.10 8.82 16 8 O -0.52 -9.88 16.84 5.17 0.09 -9.80 16 9 N -0.72 -10.17 5.55 -61.65 -0.34 -10.51 16 10 C 0.11 1.91 5.79 -4.04 -0.02 1.88 16 11 C 0.14 2.79 6.37 -4.04 -0.03 2.77 16 12 N -0.73 -18.44 5.60 -59.91 -0.34 -18.78 16 13 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 14 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 17 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 C -0.07 -0.85 10.00 -40.31 -0.40 -1.25 16 22 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.05 0.25 7.84 -51.93 -0.41 -0.16 16 24 H 0.05 0.25 7.84 -51.93 -0.41 -0.16 16 25 H 0.17 1.03 6.96 -52.49 -0.37 0.67 16 26 H 0.40 4.58 7.58 -40.82 -0.31 4.27 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.39 10.34 7.67 -40.82 -0.31 10.03 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -33.36 305.68 -6.78 -40.14 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -3.88 Total: 7.10 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.02 Total: 1.07 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.05 Total: -56.77 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.13 Total: -13.02 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.38 Total: -0.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.36 -6.78 -40.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132245866.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.597 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds