Wall clock time and date at job start Mon Mar 30 2020 02:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36215 * 117.00128 * 2 1 4 4 C 1.34082 * 122.50096 * 359.97438 * 3 2 1 5 5 S 1.70601 * 110.97404 * 179.74252 * 4 3 2 6 6 C 1.75805 * 91.62141 * 0.35615 * 5 4 3 7 7 C 1.46546 * 125.42700 * 179.90893 * 6 5 4 8 8 O 1.21718 * 120.00246 * 179.69345 * 7 6 5 9 9 N 1.34777 * 119.99894 * 359.69946 * 7 6 5 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47030 * 180.02562 * 11 10 9 13 13 C 1.36943 * 119.99943 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99502 * 359.97438 * 13 12 11 15 15 C 1.38805 * 120.00174 * 179.97438 * 13 12 11 16 16 N 1.31625 * 119.99705 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00114 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47317 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47320 * 120.00479 * 17 15 13 20 20 H 1.48507 * 109.47345 * 240.00034 * 17 15 13 21 21 C 1.36745 * 109.14881 * 359.64792 * 6 5 4 22 22 H 1.08998 * 109.47516 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46680 * 299.99914 * 1 2 3 24 24 H 1.09000 * 109.46980 * 59.99532 * 1 2 3 25 25 H 1.08002 * 124.50722 * 0.02562 * 4 3 2 26 26 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 27 27 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 28 28 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 29 29 H 1.09004 * 109.46930 * 299.99770 * 11 10 9 30 30 H 1.09004 * 109.47059 * 59.99372 * 11 10 9 31 31 H 0.96999 * 120.00085 * 359.97438 * 12 11 10 32 32 H 0.97000 * 119.99481 * 180.02562 * 16 15 13 33 33 H 1.07996 * 123.36943 * 180.30036 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.3669 2.3690 -0.0005 5 16 2.4296 3.7036 0.0068 6 6 3.8353 2.6479 -0.0003 7 6 5.2317 3.0926 -0.0004 8 8 6.1315 2.2730 0.0000 9 7 5.5195 4.4093 -0.0008 10 6 6.9155 4.8539 -0.0014 11 6 6.9636 6.3832 -0.0024 12 7 8.3595 6.8278 -0.0037 13 6 8.6520 8.1656 -0.0042 14 1 7.8535 8.8929 -0.0041 15 6 9.9746 8.5869 -0.0049 16 7 10.9476 7.7005 -0.0055 17 14 10.3735 10.4118 -0.0063 18 1 9.1115 11.1944 -0.0060 19 1 11.1635 10.7467 1.2056 20 1 11.1628 10.7450 -1.2193 21 6 3.4183 1.3456 0.0001 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 0.2895 2.4445 -0.0006 26 1 4.8025 5.0625 -0.0014 27 1 7.4180 4.4749 0.8885 28 1 7.4173 4.4744 -0.8915 29 1 6.4613 6.7619 -0.8926 30 1 6.4616 6.7631 0.8874 31 1 9.0766 6.1746 -0.0034 32 1 11.8718 7.9949 -0.0056 33 1 4.0961 0.5048 0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132245866.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:03 Heat of formation + Delta-G solvation = -50.737494 kcal Electronic energy + Delta-G solvation = -17209.613512 eV Core-core repulsion = 14169.058982 eV Total energy + Delta-G solvation = -3040.554530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13603 -40.48001 -37.45874 -36.76867 -35.57670 -33.22994 -30.95287 -29.32844 -28.66535 -26.10348 -24.85592 -23.16497 -22.37056 -20.64145 -19.77113 -19.27990 -18.11460 -17.23302 -17.04888 -16.91675 -16.61577 -16.49843 -15.53711 -15.34333 -15.32746 -15.09283 -14.64659 -14.11873 -13.81735 -13.70261 -13.12297 -13.04404 -12.70427 -12.59478 -12.52848 -12.05976 -12.02775 -11.91753 -11.85327 -11.36656 -11.00384 -10.36513 -9.96480 -9.06189 -9.04465 -7.96154 -5.27661 -0.66793 0.35850 0.80811 1.28422 1.49698 1.51122 1.61203 1.82740 2.02120 2.46725 2.59512 3.38432 3.64679 3.91551 3.98334 4.09952 4.14876 4.20052 4.39395 4.42648 4.53669 4.58819 4.76130 4.82363 4.95640 5.02049 5.11634 5.23866 5.49998 6.24312 6.24695 6.32218 6.97364 7.31054 8.02308 8.25327 9.27755 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.058131 B = 0.002877 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.555109 B = 9728.493547 C =10184.295550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C 0.086 3.914 4 C -0.326 4.326 5 S 0.293 5.707 6 C -0.267 4.267 7 C 0.587 3.413 8 O -0.571 6.571 9 N -0.704 5.704 10 C 0.127 3.873 11 C 0.148 3.852 12 N -0.747 5.747 13 C -0.245 4.245 14 H 0.085 0.915 15 C -0.079 4.079 16 N -0.971 5.971 17 Si 0.979 3.021 18 H -0.261 1.261 19 H -0.294 1.294 20 H -0.294 1.294 21 C -0.078 4.078 22 H 0.117 0.883 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.203 0.797 26 H 0.413 0.587 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.374 0.626 32 H 0.252 0.748 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.195 -10.953 0.028 29.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.030 3.970 4 C -0.464 4.464 5 S 0.560 5.440 6 C -0.388 4.388 7 C 0.374 3.626 8 O -0.452 6.452 9 N -0.356 5.356 10 C 0.003 3.997 11 C 0.021 3.979 12 N -0.390 5.390 13 C -0.377 4.377 14 H 0.103 0.897 15 C -0.271 4.271 16 N -0.622 5.622 17 Si 0.808 3.192 18 H -0.185 1.185 19 H -0.221 1.221 20 H -0.221 1.221 21 C -0.114 4.114 22 H 0.135 0.865 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.220 0.780 26 H 0.250 0.750 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.061 0.939 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -26.780 -9.924 0.037 28.560 hybrid contribution 0.661 -0.823 -0.008 1.056 sum -26.118 -10.748 0.029 28.243 Atomic orbital electron populations 1.23359 0.76039 1.05661 1.02422 1.86105 1.23558 1.24997 1.89609 1.17469 0.90995 0.85774 1.02802 1.25492 1.07332 0.96746 1.16800 1.82691 0.90110 1.04726 1.66500 1.24201 0.97531 0.98749 1.18278 1.17199 0.87125 0.82359 0.75897 1.90833 1.48472 1.54044 1.51857 1.45545 1.09157 1.06405 1.74522 1.21268 0.81593 0.95053 1.01816 1.20862 0.86796 0.90684 0.99558 1.42425 1.02284 1.04561 1.89775 1.19691 0.92064 0.84461 1.41478 0.89745 1.25684 0.95693 1.02264 1.03431 1.69849 0.98866 1.34190 1.59255 0.84988 0.78066 0.79586 0.76557 1.18496 1.22126 1.22121 1.20019 0.93951 0.96702 1.00752 0.86486 0.91487 0.91495 0.78026 0.75046 0.92152 0.92162 0.94183 0.94179 0.79390 0.93925 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.93 113.37 1.13 1.29 16 2 O -0.33 -6.01 10.56 -96.00 -1.01 -7.02 16 3 C 0.09 1.67 6.61 21.20 0.14 1.81 16 4 C -0.33 -4.54 9.81 66.87 0.66 -3.88 16 5 S 0.29 4.34 22.15 -56.49 -1.25 3.09 16 6 C -0.27 -6.38 6.45 24.09 0.16 -6.22 16 7 C 0.59 18.04 7.78 86.41 0.67 18.71 16 8 O -0.57 -22.52 16.84 -4.41 -0.07 -22.59 16 9 N -0.70 -19.53 5.55 -467.17 -2.59 -22.12 16 10 C 0.13 4.38 5.79 86.38 0.50 4.88 16 11 C 0.15 5.58 6.37 86.38 0.55 6.13 16 12 N -0.75 -37.76 5.60 -343.45 -1.92 -39.69 16 13 C -0.25 -13.47 9.99 84.03 0.84 -12.63 16 14 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 15 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 16 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 17 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 21 C -0.08 -1.87 10.00 21.80 0.22 -1.65 16 22 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.07 0.40 7.84 -2.38 -0.02 0.38 16 24 H 0.07 0.40 7.84 -2.39 -0.02 0.38 16 25 H 0.20 1.47 6.96 -2.91 -0.02 1.45 16 26 H 0.41 8.70 7.58 -92.71 -0.70 8.00 16 27 H 0.06 2.25 8.14 -2.38 -0.02 2.24 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.37 20.49 7.67 -92.71 -0.71 19.78 16 32 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -72.81 305.68 0.51 -72.30 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.26 Total: 23.68 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.32 Total: 4.39 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -4.23 Total: -121.44 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.09 Total: -29.62 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.25 Total: 3.09 kcal Total: -72.81 0.51 -72.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132245866.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.561 kcal (2) G-P(sol) polarization free energy of solvation -72.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds