Wall clock time and date at job start Mon Mar 30 2020 02:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36937 * 119.99758 * 2 1 4 4 H 1.08006 * 119.99622 * 202.36487 * 3 2 1 5 5 C 1.38814 * 120.00337 * 22.37052 * 3 2 1 6 6 N 1.31621 * 119.99722 * 11.33187 * 5 3 2 7 7 Si 1.86789 * 119.99988 * 191.32844 * 5 3 2 8 8 H 1.48502 * 109.47276 * 60.00000 * 7 5 3 9 9 H 1.48501 * 109.47054 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47591 * 300.00120 * 7 5 3 11 11 C 1.46496 * 120.00049 * 179.97438 * 2 1 3 12 12 C 1.50698 * 109.47289 * 270.00633 * 11 2 1 13 13 C 1.38671 * 120.41844 * 270.01764 * 12 11 2 14 14 C 1.38631 * 118.42107 * 179.71027 * 13 12 11 15 15 C 1.38228 * 119.15944 * 0.51100 * 14 13 12 16 16 S 1.76202 * 119.61640 * 179.75449 * 15 14 13 17 17 C 1.81398 * 104.44783 * 269.73019 * 16 15 14 18 18 O 1.42096 * 104.27863 * 25.80062 * 16 15 14 19 19 O 1.42098 * 104.27752 * 153.65876 * 16 15 14 20 20 N 1.31855 * 120.76323 * 359.47963 * 15 14 13 21 21 C 1.31888 * 121.72551 * 0.27393 * 20 15 14 22 22 H 1.08999 * 109.47183 * 274.20769 * 1 2 3 23 23 H 1.09002 * 109.46395 * 34.21213 * 1 2 3 24 24 H 1.09000 * 109.46555 * 154.20350 * 1 2 3 25 25 H 0.97001 * 119.99748 * 180.02562 * 6 5 3 26 26 H 1.08998 * 109.47512 * 150.00586 * 11 2 1 27 27 H 1.09000 * 109.46999 * 30.00544 * 11 2 1 28 28 H 1.08000 * 120.79091 * 0.02562 * 13 12 11 29 29 H 1.08003 * 120.42043 * 180.28966 * 14 13 12 30 30 H 1.08994 * 109.47441 * 60.00195 * 17 16 15 31 31 H 1.09006 * 109.46959 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.47385 * 300.00023 * 17 16 15 33 33 H 1.07997 * 119.61226 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3559 5 6 1.5340 2.3429 0.4575 6 7 0.3844 2.2689 1.0942 7 14 2.3370 4.0046 0.1696 8 1 2.4917 4.2335 -1.2895 9 1 1.4849 5.0733 0.7502 10 1 3.6724 4.0283 0.8186 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 3.6010 -1.3074 2.0836 14 6 3.7871 -1.7260 3.3920 15 6 2.8296 -2.5271 3.9854 16 16 3.0571 -3.0715 5.6458 17 6 3.9438 -4.6461 5.4884 18 8 3.8960 -2.0827 6.2269 19 8 1.7378 -3.2881 6.1274 20 7 1.7456 -2.8843 3.3252 21 6 1.5332 -2.5007 2.0814 22 1 -0.3633 0.0754 1.0249 23 1 -0.3632 0.8499 -0.5779 24 1 -0.3632 -0.9253 -0.4472 25 1 -0.0460 3.0773 1.4136 26 1 3.1500 -1.1386 -0.5132 27 1 1.6085 -2.0285 -0.5130 28 1 4.3337 -0.6836 1.5932 29 1 4.6707 -1.4328 3.9396 30 1 4.8940 -4.4789 4.9813 31 1 4.1285 -5.0597 6.4799 32 1 3.3413 -5.3462 4.9095 33 1 0.6334 -2.8137 1.5727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139637683.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:06 Heat of formation + Delta-G solvation = -5.213467 kcal Electronic energy + Delta-G solvation = -18542.395036 eV Core-core repulsion = 15503.814576 eV Total energy + Delta-G solvation = -3038.580460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.72976 -36.95353 -35.94736 -35.78121 -32.69844 -31.71071 -30.54579 -29.56818 -26.59398 -25.99899 -23.38559 -22.76887 -20.78912 -19.05636 -17.71964 -17.00196 -16.34220 -16.16131 -15.40967 -15.20828 -14.74215 -14.37412 -13.96022 -13.47574 -13.41582 -13.26278 -13.13641 -12.83915 -12.49584 -11.95452 -11.84157 -11.60345 -11.44216 -11.13389 -11.02524 -10.89978 -10.77986 -10.46373 -10.22786 -10.16325 -9.40223 -9.18694 -8.85681 -8.76414 -7.05598 -5.98663 -3.39100 0.12390 1.06681 1.67595 2.93255 3.26448 3.31677 3.33106 3.73469 4.14252 4.18812 4.33050 4.66594 4.72261 5.07949 5.17826 5.36200 5.37623 5.44167 5.50878 5.52390 5.68329 5.82903 6.18357 6.30811 6.36975 6.56751 6.76638 7.02124 7.18400 7.52028 7.59690 8.06510 8.12350 8.95343 9.56121 10.03876 11.04385 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.005221 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.496671 B = 5361.493118 C = 5722.549611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.580 5.580 3 C -0.259 4.259 4 H 0.074 0.926 5 C 0.006 3.994 6 N -0.893 5.893 7 Si 0.912 3.088 8 H -0.280 1.280 9 H -0.288 1.288 10 H -0.280 1.280 11 C 0.174 3.826 12 C -0.079 4.079 13 C -0.086 4.086 14 C -0.086 4.086 15 C -0.465 4.465 16 S 2.513 3.487 17 C -0.649 4.649 18 O -0.940 6.940 19 O -0.925 6.925 20 N -0.398 5.398 21 C 0.079 3.921 22 H 0.032 0.968 23 H 0.052 0.948 24 H 0.004 0.996 25 H 0.259 0.741 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.137 0.863 29 H 0.143 0.857 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.329 -12.639 2.960 14.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.298 5.298 3 C -0.389 4.389 4 H 0.092 0.908 5 C -0.195 4.195 6 N -0.534 5.534 7 Si 0.741 3.259 8 H -0.206 1.206 9 H -0.213 1.213 10 H -0.206 1.206 11 C 0.046 3.954 12 C -0.087 4.087 13 C -0.113 4.113 14 C -0.108 4.108 15 C -0.685 4.685 16 S 2.690 3.310 17 C -0.799 4.799 18 O -0.937 6.937 19 O -0.922 6.922 20 N -0.108 5.108 21 C -0.085 4.085 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.023 0.977 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.155 0.845 29 H 0.160 0.840 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.279 -12.526 4.150 14.613 hybrid contribution 1.136 1.403 -1.119 2.124 sum 7.415 -11.123 3.030 13.707 Atomic orbital electron populations 1.20954 0.81644 0.96361 0.99811 1.44416 1.02410 1.00306 1.82711 1.19296 0.98780 0.84746 1.36046 0.90784 1.25203 0.97549 0.99204 0.97507 1.70061 1.17261 1.28090 1.38026 0.86219 0.78697 0.82895 0.78100 1.20639 1.21316 1.20600 1.20170 0.97432 0.89032 0.88747 1.22546 0.92581 0.90489 1.03096 1.21486 0.97865 0.97942 0.94023 1.21823 0.98550 0.94920 0.95475 1.32476 0.99494 1.13039 1.23532 1.05022 0.75375 0.76804 0.73761 1.30214 1.15235 1.22830 1.11644 1.93585 1.69841 1.55940 1.74315 1.93569 1.34798 1.85943 1.77856 1.67580 1.15908 1.19554 1.07733 1.22717 0.99138 0.96251 0.90356 0.94985 0.92923 0.97740 0.93045 0.92042 0.92390 0.84470 0.83974 0.85252 0.85272 0.84894 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.66 9.01 59.85 0.54 4.20 16 2 N -0.58 -13.62 2.91 -182.50 -0.53 -14.15 16 3 C -0.26 -6.66 9.67 -15.06 -0.15 -6.80 16 4 H 0.07 1.82 7.84 -52.48 -0.41 1.41 16 5 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 6 N -0.89 -25.28 10.59 55.49 0.59 -24.70 16 7 Si 0.91 21.00 29.57 -169.99 -5.03 15.97 16 8 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 C 0.17 3.24 5.86 -5.20 -0.03 3.21 16 12 C -0.08 -1.47 5.48 -104.48 -0.57 -2.04 16 13 C -0.09 -1.52 9.86 -39.28 -0.39 -1.90 16 14 C -0.09 -1.41 9.51 -39.44 -0.38 -1.79 16 15 C -0.46 -7.82 6.53 -17.55 -0.11 -7.94 16 16 S 2.51 34.32 5.86 -107.50 -0.63 33.69 16 17 C -0.65 -5.13 10.80 101.05 1.09 -4.04 16 18 O -0.94 -14.98 17.10 -57.54 -0.98 -15.96 16 19 O -0.92 -16.18 17.73 -57.54 -1.02 -17.20 16 20 N -0.40 -7.42 10.05 -12.45 -0.13 -7.54 16 21 C 0.08 1.46 10.86 -17.55 -0.19 1.27 16 22 H 0.03 0.83 7.42 -51.93 -0.39 0.44 16 23 H 0.05 1.32 7.19 -51.93 -0.37 0.95 16 24 H 0.00 0.08 7.84 -51.93 -0.41 -0.33 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.06 1.07 7.99 -51.93 -0.41 0.65 16 27 H 0.06 0.94 7.82 -51.93 -0.41 0.53 16 28 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 29 H 0.14 1.94 7.56 -52.48 -0.40 1.54 16 30 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.13 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.16 2.53 8.06 -52.49 -0.42 2.10 16 LS Contribution 300.33 15.07 4.53 4.53 Total: -1.00 -34.69 300.33 -7.52 -42.21 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.04 Total: -1.09 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -0.28 Total: -15.77 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.07 Total: -46.39 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -2.00 Total: -33.16 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 16 Polarization: 34.32 SS G_CDS: -0.63 Total: 33.69 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.69 -7.52 -42.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139637683.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.001 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds