Wall clock time and date at job start Mon Mar 30 2020 02:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36937 * 119.99758 * 2 1 4 4 H 1.08006 * 119.99622 * 202.36487 * 3 2 1 5 5 C 1.38814 * 120.00337 * 22.37052 * 3 2 1 6 6 N 1.31621 * 119.99722 * 11.33187 * 5 3 2 7 7 Si 1.86789 * 119.99988 * 191.32844 * 5 3 2 8 8 H 1.48502 * 109.47276 * 60.00000 * 7 5 3 9 9 H 1.48501 * 109.47054 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47591 * 300.00120 * 7 5 3 11 11 C 1.46496 * 120.00049 * 179.97438 * 2 1 3 12 12 C 1.50698 * 109.47289 * 270.00633 * 11 2 1 13 13 C 1.38671 * 120.41844 * 270.01764 * 12 11 2 14 14 C 1.38631 * 118.42107 * 179.71027 * 13 12 11 15 15 C 1.38228 * 119.15944 * 0.51100 * 14 13 12 16 16 S 1.76202 * 119.61640 * 179.75449 * 15 14 13 17 17 C 1.81398 * 104.44783 * 269.73019 * 16 15 14 18 18 O 1.42096 * 104.27863 * 25.80062 * 16 15 14 19 19 O 1.42098 * 104.27752 * 153.65876 * 16 15 14 20 20 N 1.31855 * 120.76323 * 359.47963 * 15 14 13 21 21 C 1.31888 * 121.72551 * 0.27393 * 20 15 14 22 22 H 1.08999 * 109.47183 * 274.20769 * 1 2 3 23 23 H 1.09002 * 109.46395 * 34.21213 * 1 2 3 24 24 H 1.09000 * 109.46555 * 154.20350 * 1 2 3 25 25 H 0.97001 * 119.99748 * 180.02562 * 6 5 3 26 26 H 1.08998 * 109.47512 * 150.00586 * 11 2 1 27 27 H 1.09000 * 109.46999 * 30.00544 * 11 2 1 28 28 H 1.08000 * 120.79091 * 0.02562 * 13 12 11 29 29 H 1.08003 * 120.42043 * 180.28966 * 14 13 12 30 30 H 1.08994 * 109.47441 * 60.00195 * 17 16 15 31 31 H 1.09006 * 109.46959 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.47385 * 300.00023 * 17 16 15 33 33 H 1.07997 * 119.61226 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3559 5 6 1.5340 2.3429 0.4575 6 7 0.3844 2.2689 1.0942 7 14 2.3370 4.0046 0.1696 8 1 2.4917 4.2335 -1.2895 9 1 1.4849 5.0733 0.7502 10 1 3.6724 4.0283 0.8186 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 3.6010 -1.3074 2.0836 14 6 3.7871 -1.7260 3.3920 15 6 2.8296 -2.5271 3.9854 16 16 3.0571 -3.0715 5.6458 17 6 3.9438 -4.6461 5.4884 18 8 3.8960 -2.0827 6.2269 19 8 1.7378 -3.2881 6.1274 20 7 1.7456 -2.8843 3.3252 21 6 1.5332 -2.5007 2.0814 22 1 -0.3633 0.0754 1.0249 23 1 -0.3632 0.8499 -0.5779 24 1 -0.3632 -0.9253 -0.4472 25 1 -0.0460 3.0773 1.4136 26 1 3.1500 -1.1386 -0.5132 27 1 1.6085 -2.0285 -0.5130 28 1 4.3337 -0.6836 1.5932 29 1 4.6707 -1.4328 3.9396 30 1 4.8940 -4.4789 4.9813 31 1 4.1285 -5.0597 6.4799 32 1 3.3413 -5.3462 4.9095 33 1 0.6334 -2.8137 1.5727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139637683.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:05 Heat of formation + Delta-G solvation = -31.780276 kcal Electronic energy + Delta-G solvation = -18543.547059 eV Core-core repulsion = 15503.814576 eV Total energy + Delta-G solvation = -3039.732483 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.13873 -38.14272 -37.63971 -36.98730 -34.32840 -33.16789 -32.18970 -30.30882 -28.23204 -27.78534 -24.81913 -24.33418 -22.40893 -20.24984 -18.98183 -18.76094 -17.72546 -17.24758 -17.05935 -16.46083 -16.22621 -15.68212 -15.64127 -15.17594 -14.73401 -14.45735 -14.03558 -13.93385 -13.92162 -13.24969 -13.16244 -13.07994 -13.03015 -12.84461 -12.63013 -12.48251 -12.14346 -12.04260 -11.99412 -11.82790 -10.81546 -10.73211 -10.55847 -10.25220 -8.92329 -7.91299 -5.38625 -0.89269 -0.28330 0.26270 1.44317 1.45987 1.52541 1.80985 2.40505 2.52847 3.02964 3.06645 3.26546 3.66332 3.75055 3.94887 3.97408 4.07322 4.12108 4.27643 4.34282 4.49511 4.77335 4.81453 4.92348 4.93550 4.94675 5.27883 5.33871 5.56652 5.62748 5.67889 6.23607 6.66608 7.05413 7.75613 8.18378 9.11523 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.005221 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.496671 B = 5361.493118 C = 5722.549611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.603 5.603 3 C -0.261 4.261 4 H 0.082 0.918 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.969 3.031 8 H -0.272 1.272 9 H -0.300 1.300 10 H -0.274 1.274 11 C 0.176 3.824 12 C -0.091 4.091 13 C -0.092 4.092 14 C -0.093 4.093 15 C -0.465 4.465 16 S 2.511 3.489 17 C -0.608 4.608 18 O -0.968 6.968 19 O -0.971 6.971 20 N -0.420 5.420 21 C 0.069 3.931 22 H -0.004 1.004 23 H 0.023 0.977 24 H 0.040 0.960 25 H 0.248 0.752 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.150 0.850 29 H 0.171 0.829 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.150 0.850 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.832 -15.161 3.292 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.323 5.323 3 C -0.391 4.391 4 H 0.100 0.900 5 C -0.248 4.248 6 N -0.583 5.583 7 Si 0.797 3.203 8 H -0.198 1.198 9 H -0.227 1.227 10 H -0.200 1.200 11 C 0.049 3.951 12 C -0.097 4.097 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.683 4.683 16 S 2.691 3.309 17 C -0.764 4.764 18 O -0.965 6.965 19 O -0.968 6.968 20 N -0.129 5.129 21 C -0.093 4.093 22 H 0.014 0.986 23 H 0.041 0.959 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.167 0.833 29 H 0.189 0.811 30 H 0.178 0.822 31 H 0.183 0.817 32 H 0.168 0.832 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.793 -15.045 4.445 17.984 hybrid contribution 0.549 1.797 -1.081 2.168 sum 9.342 -13.248 3.364 16.556 Atomic orbital electron populations 1.20633 0.82376 0.96793 0.97379 1.44389 1.02292 1.01340 1.84310 1.19597 0.98744 0.85914 1.34856 0.89997 1.25884 0.98297 1.02238 0.98394 1.70250 1.19253 1.27721 1.41113 0.85319 0.77630 0.79265 0.78132 1.19784 1.22666 1.19996 1.20271 0.98052 0.87684 0.89082 1.22557 0.93314 0.91465 1.02353 1.21826 0.97954 0.97411 0.94754 1.22204 0.99603 0.94296 0.95331 1.33310 0.98488 1.11925 1.24566 1.05143 0.74905 0.78885 0.71989 1.29919 1.15191 1.16537 1.14722 1.93546 1.69639 1.59199 1.74128 1.93519 1.38192 1.87177 1.77948 1.67662 1.16886 1.20352 1.08034 1.23046 0.99475 0.96151 0.90644 0.98612 0.95857 0.94128 0.94317 0.90584 0.89745 0.83279 0.81142 0.82160 0.81742 0.83169 0.81372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.26 9.01 127.77 1.15 9.41 16 2 N -0.60 -28.25 2.91 -731.30 -2.13 -30.38 16 3 C -0.26 -13.47 9.67 84.03 0.81 -12.66 16 4 H 0.08 3.97 7.84 -2.91 -0.02 3.95 16 5 C -0.05 -2.88 5.13 84.86 0.44 -2.44 16 6 N -0.94 -55.60 10.59 21.65 0.23 -55.37 16 7 Si 0.97 44.18 29.57 68.60 2.03 46.21 16 8 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 9 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 C 0.18 6.25 5.86 85.63 0.50 6.75 16 12 C -0.09 -3.25 5.48 -19.77 -0.11 -3.36 16 13 C -0.09 -3.10 9.86 22.47 0.22 -2.88 16 14 C -0.09 -2.87 9.51 22.36 0.21 -2.66 16 15 C -0.47 -14.80 6.53 84.69 0.55 -14.25 16 16 S 2.51 62.78 5.86 -56.49 -0.33 62.45 16 17 C -0.61 -6.17 10.80 113.37 1.22 -4.95 16 18 O -0.97 -29.00 17.10 -127.65 -2.18 -31.18 16 19 O -0.97 -33.15 17.73 -127.65 -2.26 -35.42 16 20 N -0.42 -15.14 10.05 -193.31 -1.94 -17.08 16 21 C 0.07 2.46 10.86 84.67 0.92 3.38 16 22 H 0.00 -0.25 7.42 -2.39 -0.02 -0.26 16 23 H 0.02 1.20 7.19 -2.39 -0.02 1.18 16 24 H 0.04 1.58 7.84 -2.39 -0.02 1.56 16 25 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.08 2.47 7.99 -2.39 -0.02 2.45 16 27 H 0.08 2.52 7.82 -2.39 -0.02 2.50 16 28 H 0.15 4.57 8.06 -2.91 -0.02 4.55 16 29 H 0.17 4.15 7.56 -2.91 -0.02 4.13 16 30 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.17 5.32 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -78.86 300.33 0.44 -78.42 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.11 Total: 6.01 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 5.92 Total: -23.65 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -3.84 Total: -102.83 kcal Atomic # 8 Polarization: -62.15 SS G_CDS: -4.45 Total: -66.60 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 62.78 SS G_CDS: -0.33 Total: 62.45 kcal Total: -78.86 0.44 -78.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139637683.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.640 kcal (2) G-P(sol) polarization free energy of solvation -78.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds