Wall clock time and date at job start Mon Mar 30 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39121 * 120.32187 * 83.84498 * 3 2 1 5 5 C 1.38500 * 120.28823 * 180.02562 * 4 3 2 6 6 C 1.37804 * 120.85790 * 0.02562 * 5 4 3 7 7 C 1.39309 * 120.20890 * 359.97438 * 6 5 4 8 8 N 1.37139 * 133.58949 * 179.97438 * 7 6 5 9 9 H 0.96997 * 125.42837 * 0.02629 * 8 7 6 10 10 N 1.39856 * 109.13798 * 179.79273 * 8 7 6 11 11 C 1.30762 * 109.96947 * 0.40327 * 10 8 7 12 12 N 1.40007 * 126.15366 * 179.88014 * 11 10 8 13 13 C 1.34777 * 119.99955 * 359.67750 * 12 11 10 14 14 O 1.21293 * 120.00456 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72977 * 13 12 11 16 16 C 1.50703 * 109.47148 * 180.28037 * 15 13 12 17 17 H 1.08001 * 120.00037 * 359.97438 * 16 15 13 18 18 C 1.37879 * 119.99824 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99907 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00297 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47136 * 89.99858 * 20 18 16 22 22 H 1.48503 * 109.47098 * 209.99924 * 20 18 16 23 23 H 1.48504 * 109.46915 * 329.99778 * 20 18 16 24 24 C 1.40647 * 119.61324 * 0.02562 * 7 6 5 25 25 H 1.08005 * 119.85436 * 0.03254 * 4 3 2 26 26 H 1.08006 * 119.57400 * 180.02562 * 5 4 3 27 27 H 1.07997 * 119.89827 * 180.02562 * 6 5 4 28 28 H 0.97001 * 119.99560 * 179.68887 * 12 11 10 29 29 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 30 30 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 31 31 H 0.96997 * 120.00400 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 -0.1278 -1.1940 5 6 4.6554 -0.1276 -1.1931 6 6 5.3615 -0.0015 -0.0164 7 6 4.6867 0.1289 1.1954 8 7 5.0978 0.2680 2.4963 9 1 6.0203 0.2996 2.7941 10 7 3.9747 0.3624 3.3244 11 6 2.8837 0.2807 2.6082 12 7 1.5714 0.3336 3.0933 13 6 1.3465 0.4750 4.4146 14 8 2.2810 0.5569 5.1836 15 6 -0.0660 0.5380 4.9360 16 6 -0.0418 0.7037 6.4337 17 1 0.9021 0.7576 6.9558 18 6 -1.2246 0.7866 7.1373 19 7 -1.2034 0.9308 8.4444 20 14 -2.8572 0.6942 6.2342 21 1 -3.2959 -0.7219 6.1484 22 1 -3.8759 1.4843 6.9712 23 1 -2.6974 1.2468 4.8651 24 6 3.2803 0.1305 1.2111 25 1 2.7333 -0.2280 -2.1256 26 1 5.1891 -0.2276 -2.1268 27 1 6.4413 -0.0029 -0.0338 28 1 0.8240 0.2683 2.4783 29 1 -0.5824 1.3855 4.4850 30 1 -0.5890 -0.3837 4.6809 31 1 -2.0355 0.9895 8.9394 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189415.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:08 Heat of formation + Delta-G solvation = 90.494255 kcal Electronic energy + Delta-G solvation = -19057.017334 eV Core-core repulsion = 15919.435872 eV Total energy + Delta-G solvation = -3137.581462 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58083 -39.04151 -37.78547 -36.46031 -34.52327 -32.91823 -32.02207 -30.33808 -29.94206 -29.05887 -24.43433 -24.07787 -22.74136 -21.37403 -19.88321 -19.53143 -17.38260 -16.95165 -16.51339 -16.19329 -15.60259 -15.50342 -15.49598 -14.47037 -14.41726 -14.24405 -13.79955 -13.49950 -13.31320 -13.05064 -12.26438 -12.21121 -12.18839 -11.86130 -11.74065 -11.01129 -10.87590 -10.82468 -10.58218 -10.03431 -9.42425 -9.33342 -9.02650 -8.94711 -8.61351 -7.87975 -6.06798 -4.07919 0.18268 1.05457 2.27611 2.34970 2.43569 2.67894 3.23251 3.26488 3.33433 3.35228 3.44136 3.51596 3.65362 4.24485 4.38240 4.48083 4.57532 4.77691 4.93556 5.19656 5.23395 5.35324 5.63624 5.75188 5.88944 5.93895 6.28796 6.48782 6.75055 6.79929 7.04969 7.18576 7.31003 7.51299 7.92136 8.47964 8.80230 9.11683 9.50115 11.05772 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027599 B = 0.004818 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.285647 B = 5810.474568 C = 6809.597885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.243 3.757 3 C 0.050 3.950 4 C -0.107 4.107 5 C -0.073 4.073 6 C -0.115 4.115 7 C 0.145 3.855 8 N -0.503 5.503 9 H 0.445 0.555 10 N -0.224 5.224 11 C 0.324 3.676 12 N -0.652 5.652 13 C 0.513 3.487 14 O -0.473 6.473 15 C -0.024 4.024 16 C -0.517 4.517 17 H 0.094 0.906 18 C 0.072 3.928 19 N -0.893 5.893 20 Si 0.872 3.128 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.265 1.265 24 C -0.149 4.149 25 H 0.138 0.862 26 H 0.141 0.859 27 H 0.136 0.864 28 H 0.412 0.588 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.872 -2.531 -23.233 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.072 5.072 2 C -0.072 4.072 3 C 0.044 3.956 4 C -0.130 4.130 5 C -0.094 4.094 6 C -0.138 4.138 7 C 0.026 3.974 8 N -0.219 5.219 9 H 0.291 0.709 10 N -0.048 5.048 11 C 0.056 3.944 12 N -0.306 5.306 13 C 0.302 3.698 14 O -0.340 6.340 15 C -0.064 4.064 16 C -0.555 4.555 17 H 0.112 0.888 18 C -0.130 4.130 19 N -0.531 5.531 20 Si 0.698 3.302 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.190 1.190 24 C -0.161 4.161 25 H 0.156 0.844 26 H 0.159 0.841 27 H 0.154 0.846 28 H 0.249 0.751 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.053 -2.300 -21.145 24.447 hybrid contribution -0.720 -0.155 -1.318 1.510 sum 11.334 -2.455 -22.463 25.280 Atomic orbital electron populations 1.81337 1.11606 1.07710 1.06580 1.25739 0.92748 0.94457 0.94272 1.15340 0.83888 1.03675 0.92716 1.20945 0.94288 1.01685 0.96054 1.20851 0.93212 0.97578 0.97750 1.20309 1.00197 1.04241 0.89025 1.18623 0.92236 0.98863 0.87651 1.46021 1.08206 1.66219 1.01437 0.70946 1.77552 0.90896 1.22867 1.13445 1.20436 0.87359 0.98390 0.88203 1.43940 1.02617 1.73677 1.10319 1.21952 0.94453 0.74342 0.79099 1.90695 1.45155 1.43573 1.54546 1.19728 0.87713 0.99094 0.99872 1.20933 0.96035 1.50699 0.87805 0.88759 1.24935 0.98706 0.94559 0.94784 1.69883 1.27479 1.49604 1.06172 0.86924 0.84176 0.78682 0.80377 1.19954 1.20914 1.19000 1.19279 0.92883 1.12871 0.91108 0.84372 0.84094 0.84625 0.75110 0.93027 0.93473 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.59 18.38 41.84 0.77 -4.82 16 2 C 0.24 2.96 13.73 -22.47 -0.31 2.65 16 3 C 0.05 0.52 5.76 -106.56 -0.61 -0.10 16 4 C -0.11 -0.73 9.74 -39.16 -0.38 -1.11 16 5 C -0.07 -0.38 9.99 -39.64 -0.40 -0.78 16 6 C -0.11 -0.74 10.06 -39.34 -0.40 -1.13 16 7 C 0.14 1.52 7.32 -84.18 -0.62 0.91 16 8 N -0.50 -6.10 7.37 32.35 0.24 -5.86 16 9 H 0.44 3.77 8.96 -182.78 -1.64 2.13 16 10 N -0.22 -4.00 10.80 32.56 0.35 -3.65 16 11 C 0.32 5.54 7.97 -152.62 -1.22 4.33 16 12 N -0.65 -12.08 5.44 -9.78 -0.05 -12.14 16 13 C 0.51 11.80 7.79 -10.98 -0.09 11.71 16 14 O -0.47 -12.55 14.19 5.55 0.08 -12.47 16 15 C -0.02 -0.59 4.53 -29.03 -0.13 -0.72 16 16 C -0.52 -15.24 9.48 -34.44 -0.33 -15.56 16 17 H 0.09 3.14 7.00 -52.49 -0.37 2.77 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.89 -27.83 13.96 55.43 0.77 -27.05 16 20 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 24 C -0.15 -1.92 6.17 -104.79 -0.65 -2.56 16 25 H 0.14 0.62 8.06 -52.48 -0.42 0.19 16 26 H 0.14 0.27 8.06 -52.48 -0.42 -0.15 16 27 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 28 H 0.41 6.74 7.01 -40.82 -0.29 6.46 16 29 H 0.05 1.18 7.20 -51.92 -0.37 0.81 16 30 H 0.05 1.06 7.57 -51.93 -0.39 0.67 16 31 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -36.59 286.59 -6.90 -43.49 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -3.49 Total: 2.05 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -5.22 Total: -0.34 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 2.08 Total: -53.52 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.47 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -36.59 -6.90 -43.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189415.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.983 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds