Wall clock time and date at job start Mon Mar 30 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39121 * 120.32187 * 83.84498 * 3 2 1 5 5 C 1.38500 * 120.28823 * 180.02562 * 4 3 2 6 6 C 1.37804 * 120.85790 * 0.02562 * 5 4 3 7 7 C 1.39309 * 120.20890 * 359.97438 * 6 5 4 8 8 N 1.37139 * 133.58949 * 179.97438 * 7 6 5 9 9 H 0.96997 * 125.42837 * 0.02629 * 8 7 6 10 10 N 1.39856 * 109.13798 * 179.79273 * 8 7 6 11 11 C 1.30762 * 109.96947 * 0.40327 * 10 8 7 12 12 N 1.40007 * 126.15366 * 179.88014 * 11 10 8 13 13 C 1.34777 * 119.99955 * 359.67750 * 12 11 10 14 14 O 1.21293 * 120.00456 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72977 * 13 12 11 16 16 C 1.50703 * 109.47148 * 180.28037 * 15 13 12 17 17 H 1.08001 * 120.00037 * 359.97438 * 16 15 13 18 18 C 1.37879 * 119.99824 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99907 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00297 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47136 * 89.99858 * 20 18 16 22 22 H 1.48503 * 109.47098 * 209.99924 * 20 18 16 23 23 H 1.48504 * 109.46915 * 329.99778 * 20 18 16 24 24 C 1.40647 * 119.61324 * 0.02562 * 7 6 5 25 25 H 1.08005 * 119.85436 * 0.03254 * 4 3 2 26 26 H 1.08006 * 119.57400 * 180.02562 * 5 4 3 27 27 H 1.07997 * 119.89827 * 180.02562 * 6 5 4 28 28 H 0.97001 * 119.99560 * 179.68887 * 12 11 10 29 29 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 30 30 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 31 31 H 0.96997 * 120.00400 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 -0.1278 -1.1940 5 6 4.6554 -0.1276 -1.1931 6 6 5.3615 -0.0015 -0.0164 7 6 4.6867 0.1289 1.1954 8 7 5.0978 0.2680 2.4963 9 1 6.0203 0.2996 2.7941 10 7 3.9747 0.3624 3.3244 11 6 2.8837 0.2807 2.6082 12 7 1.5714 0.3336 3.0933 13 6 1.3465 0.4750 4.4146 14 8 2.2810 0.5569 5.1836 15 6 -0.0660 0.5380 4.9360 16 6 -0.0418 0.7037 6.4337 17 1 0.9021 0.7576 6.9558 18 6 -1.2246 0.7866 7.1373 19 7 -1.2034 0.9308 8.4444 20 14 -2.8572 0.6942 6.2342 21 1 -3.2959 -0.7219 6.1484 22 1 -3.8759 1.4843 6.9712 23 1 -2.6974 1.2468 4.8651 24 6 3.2803 0.1305 1.2111 25 1 2.7333 -0.2280 -2.1256 26 1 5.1891 -0.2276 -2.1268 27 1 6.4413 -0.0029 -0.0338 28 1 0.8240 0.2683 2.4783 29 1 -0.5824 1.3855 4.4850 30 1 -0.5890 -0.3837 4.6809 31 1 -2.0355 0.9895 8.9394 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189415.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:08 Heat of formation + Delta-G solvation = 62.890489 kcal Electronic energy + Delta-G solvation = -19058.214323 eV Core-core repulsion = 15919.435872 eV Total energy + Delta-G solvation = -3138.778451 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.54625 -40.66546 -38.65247 -37.38108 -35.97275 -35.11156 -33.04099 -31.84589 -31.00490 -30.24625 -26.03335 -25.12517 -23.69889 -22.71778 -21.26701 -20.56663 -19.14791 -18.36783 -17.56848 -17.36180 -16.98316 -16.79656 -16.35715 -16.16989 -15.82218 -15.18494 -15.16267 -14.80607 -14.36440 -14.29880 -13.91267 -13.74607 -12.93654 -12.87208 -12.81849 -12.50317 -12.44934 -12.20661 -12.06156 -11.85312 -11.62612 -10.85787 -10.81278 -10.44329 -9.79929 -8.83278 -8.32272 -6.41924 -0.55674 0.40557 0.96927 1.30344 1.36141 1.39145 1.47916 1.49461 1.85928 1.93467 2.12710 2.32438 2.72420 2.84481 3.00361 3.34254 3.57111 3.91111 4.02150 4.14652 4.36454 4.54481 4.61073 4.66474 4.87530 4.98065 5.27544 5.32382 5.38876 5.44024 5.70935 5.91805 6.22462 6.31588 6.44383 6.64058 6.73526 7.08597 7.23262 8.84905 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027599 B = 0.004818 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.285647 B = 5810.474568 C = 6809.597885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.261 3.739 3 C 0.020 3.980 4 C -0.076 4.076 5 C -0.055 4.055 6 C -0.096 4.096 7 C 0.137 3.863 8 N -0.493 5.493 9 H 0.457 0.543 10 N -0.279 5.279 11 C 0.290 3.710 12 N -0.640 5.640 13 C 0.514 3.486 14 O -0.523 6.523 15 C -0.023 4.023 16 C -0.537 4.537 17 H 0.034 0.966 18 C 0.010 3.990 19 N -0.947 5.947 20 Si 0.955 3.045 21 H -0.260 1.260 22 H -0.280 1.280 23 H -0.236 1.236 24 C -0.168 4.168 25 H 0.170 0.830 26 H 0.192 0.808 27 H 0.176 0.824 28 H 0.422 0.578 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.569 -3.087 -28.433 31.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.054 4.054 3 C 0.014 3.986 4 C -0.098 4.098 5 C -0.075 4.075 6 C -0.118 4.118 7 C 0.020 3.980 8 N -0.212 5.212 9 H 0.306 0.694 10 N -0.103 5.103 11 C 0.024 3.976 12 N -0.293 5.293 13 C 0.303 3.697 14 O -0.394 6.394 15 C -0.063 4.063 16 C -0.575 4.575 17 H 0.053 0.947 18 C -0.188 4.188 19 N -0.586 5.586 20 Si 0.776 3.224 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.159 1.159 24 C -0.180 4.180 25 H 0.188 0.812 26 H 0.210 0.790 27 H 0.193 0.807 28 H 0.261 0.739 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.779 -2.864 -26.422 29.490 hybrid contribution -0.643 -0.001 0.150 0.660 sum 12.137 -2.865 -26.273 29.082 Atomic orbital electron populations 1.81336 1.12835 1.09765 1.07905 1.26072 0.93105 0.93118 0.93059 1.15504 0.82972 1.06847 0.93273 1.21499 0.95312 0.97413 0.95606 1.21485 0.92425 0.94531 0.99107 1.20892 1.02249 1.01352 0.87303 1.19067 0.91531 0.99416 0.88019 1.45840 1.07494 1.66013 1.01859 0.69438 1.77329 0.92804 1.23494 1.16651 1.20617 0.86153 1.00255 0.90557 1.43354 1.04301 1.72879 1.08764 1.21662 0.93522 0.74078 0.80431 1.90671 1.46231 1.46207 1.56272 1.19628 0.89311 1.00812 0.96518 1.21049 0.94151 1.51445 0.90821 0.94740 1.26026 1.03653 0.93477 0.95615 1.70063 1.29135 1.50891 1.08540 0.85626 0.77314 0.79548 0.79961 1.18452 1.20492 1.15933 1.19294 0.94134 1.14868 0.89664 0.81219 0.79048 0.80704 0.73944 0.90936 0.91070 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.13 18.38 19.00 0.35 -11.78 16 2 C 0.26 6.02 13.73 88.33 1.21 7.23 16 3 C 0.02 0.37 5.76 -21.12 -0.12 0.25 16 4 C -0.08 -0.63 9.74 22.54 0.22 -0.41 16 5 C -0.06 -0.19 9.99 22.23 0.22 0.03 16 6 C -0.10 -0.70 10.06 22.42 0.23 -0.48 16 7 C 0.14 2.56 7.32 39.16 0.29 2.85 16 8 N -0.49 -11.76 7.37 -51.57 -0.38 -12.14 16 9 H 0.46 7.48 8.96 -213.48 -1.91 5.57 16 10 N -0.28 -10.45 10.80 -50.90 -0.55 -10.99 16 11 C 0.29 10.28 7.97 135.00 1.08 11.36 16 12 N -0.64 -24.62 5.44 -303.23 -1.65 -26.27 16 13 C 0.51 24.92 7.79 87.66 0.68 25.60 16 14 O -0.52 -29.93 14.19 -3.07 -0.04 -29.97 16 15 C -0.02 -1.13 4.53 29.10 0.13 -1.00 16 16 C -0.54 -33.32 9.48 25.60 0.24 -33.08 16 17 H 0.03 2.49 7.00 -2.91 -0.02 2.47 16 18 C 0.01 0.58 5.47 84.65 0.46 1.05 16 19 N -0.95 -61.55 13.96 21.45 0.30 -61.25 16 20 Si 0.95 43.65 27.47 68.60 1.88 45.54 16 21 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 24 C -0.17 -4.13 6.17 -19.97 -0.12 -4.26 16 25 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 26 H 0.19 -1.03 8.06 -2.91 -0.02 -1.06 16 27 H 0.18 0.01 8.06 -2.91 -0.02 -0.02 16 28 H 0.42 14.06 7.01 -92.71 -0.65 13.41 16 29 H 0.07 3.26 7.20 -2.38 -0.02 3.24 16 30 H 0.07 3.16 7.57 -2.39 -0.02 3.14 16 31 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -89.62 286.59 3.03 -86.59 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -1.40 Total: 11.15 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 4.52 Total: 9.13 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -1.93 Total: -122.44 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.04 Total: -29.97 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.54 kcal Total: -89.62 3.03 -86.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189415.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.480 kcal (2) G-P(sol) polarization free energy of solvation -89.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds