Wall clock time and date at job start Mon Mar 30 2020 00:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00164 * 2 1 4 4 H 1.48494 * 109.47329 * 269.99966 * 3 2 1 5 5 H 1.48500 * 109.47166 * 30.00169 * 3 2 1 6 6 H 1.48504 * 109.46858 * 149.99983 * 3 2 1 7 7 C 1.38818 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99812 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00208 * 180.02562 * 7 2 1 10 10 C 1.46492 * 120.00015 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47273 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47652 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00394 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00053 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00003 * 180.02562 * 13 12 11 16 16 O 1.42905 * 109.47208 * 180.02562 * 15 13 12 17 17 C 1.36232 * 117.00188 * 179.97438 * 16 15 13 18 18 C 1.38668 * 122.58400 * 179.97438 * 17 16 15 19 19 C 1.33433 * 114.88144 * 180.02562 * 18 17 16 20 20 S 1.75865 * 109.66167 * 359.75827 * 19 18 17 21 21 C 1.33630 * 122.58638 * 0.02643 * 17 16 15 22 22 H 0.96997 * 119.99532 * 0.02562 * 1 2 3 23 23 H 0.97005 * 119.99410 * 359.97438 * 9 7 2 24 24 H 1.09005 * 109.47692 * 59.99513 * 10 9 7 25 25 H 1.09001 * 109.47230 * 299.99273 * 10 9 7 26 26 H 1.09005 * 109.46732 * 59.99448 * 11 10 9 27 27 H 1.09005 * 109.47311 * 300.00092 * 11 10 9 28 28 H 0.97005 * 119.99361 * 0.02562 * 12 11 10 29 29 H 1.08997 * 109.47783 * 59.99584 * 15 13 12 30 30 H 1.09001 * 109.47298 * 299.99616 * 15 13 12 31 31 H 1.07996 * 122.55913 * 0.04163 * 18 17 16 32 32 H 1.08000 * 125.16852 * 180.02562 * 19 18 17 33 33 H 1.08002 * 125.19356 * 359.94691 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4709 -0.0011 11 6 5.6163 -2.1915 -0.0009 12 7 6.3488 -3.4601 -0.0014 13 6 7.6966 -3.4602 -0.0008 14 8 8.3030 -2.4099 -0.0002 15 6 8.4500 -4.7653 -0.0019 16 8 9.8550 -4.5042 -0.0003 17 6 10.6848 -5.5846 -0.0005 18 6 12.0663 -5.4651 0.0003 19 6 12.7300 -6.6227 -0.0006 20 16 11.5875 -7.9598 0.0044 21 6 10.2303 -6.8412 -0.0026 22 1 -0.4849 0.8401 -0.0004 23 1 3.8646 -0.3621 0.0004 24 1 3.8490 -3.0417 -0.8918 25 1 3.8485 -3.0435 0.8882 26 1 5.8796 -1.6206 0.8896 27 1 5.8797 -1.6191 -0.8904 28 1 5.8637 -4.3002 -0.0022 29 1 8.1871 -5.3359 -0.8925 30 1 8.1863 -5.3378 0.8874 31 1 12.5670 -4.5082 0.0019 32 1 13.8053 -6.7233 0.0003 33 1 9.1886 -7.1264 -0.0035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147935337.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:19 Heat of formation + Delta-G solvation = -16.598460 kcal Electronic energy + Delta-G solvation = -17138.837846 eV Core-core repulsion = 14099.763696 eV Total energy + Delta-G solvation = -3039.074150 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48064 -39.26246 -36.35187 -35.80315 -34.03980 -31.57149 -29.77554 -29.41167 -27.55631 -24.15861 -23.15778 -21.56607 -20.65414 -20.07051 -18.66913 -17.91881 -17.29489 -16.83883 -16.70418 -15.74224 -15.23046 -14.62528 -14.41927 -14.16596 -14.00536 -13.78998 -13.48986 -13.06457 -12.98118 -12.67333 -12.18275 -11.68586 -11.56212 -11.29033 -11.27109 -11.01593 -10.88051 -10.19448 -9.97936 -9.65832 -9.23005 -9.15852 -8.95406 -8.36948 -7.34823 -5.83517 -3.21402 0.59286 1.23082 1.58877 2.34591 2.38682 2.45597 3.36106 3.39786 3.43154 3.48220 4.40905 4.51597 4.54556 4.66263 4.72005 4.87846 4.99964 5.24780 5.39651 5.50228 5.53530 5.56370 5.59399 5.80777 5.88778 6.25042 6.51701 6.51770 6.85474 7.36290 7.89257 8.07016 8.34356 9.11763 9.84085 10.01950 11.34181 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.062060 B = 0.002559 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.067550 B =10941.069811 C =11366.387382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.149 3.851 11 C 0.109 3.891 12 N -0.718 5.718 13 C 0.513 3.487 14 O -0.518 6.518 15 C 0.044 3.956 16 O -0.278 6.278 17 C 0.118 3.882 18 C -0.140 4.140 19 C -0.187 4.187 20 S 0.117 5.883 21 C -0.327 4.327 22 H 0.261 0.739 23 H 0.364 0.636 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.403 0.597 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.173 0.827 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.398 -17.561 -0.003 30.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.015 4.015 12 N -0.372 5.372 13 C 0.297 3.703 14 O -0.393 6.393 15 C -0.035 4.035 16 O -0.191 6.191 17 C 0.062 3.938 18 C -0.171 4.171 19 C -0.323 4.323 20 S 0.377 5.623 21 C -0.463 4.463 22 H 0.071 0.929 23 H 0.197 0.803 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.237 0.763 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.170 0.830 32 H 0.190 0.810 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 24.760 -18.202 0.008 30.731 hybrid contribution -0.114 2.100 0.002 2.103 sum 24.645 -16.102 0.010 29.439 Atomic orbital electron populations 1.69698 1.05120 1.26045 1.56946 1.24683 0.95280 0.97366 1.01572 0.86540 0.79290 0.84723 0.77960 1.20883 1.21551 1.20149 1.18997 0.80166 0.94882 1.43949 0.89074 1.42528 1.04178 1.01819 1.91374 1.20727 0.87437 0.90354 0.99383 1.21650 0.92439 0.84637 1.02743 1.45706 1.05381 1.10672 1.75435 1.19928 0.82618 0.90285 0.77461 1.90768 1.67890 1.32914 1.47738 1.22460 0.80439 0.96651 1.03947 1.86212 1.15207 1.28694 1.88967 1.17913 0.90639 0.85748 0.99537 1.19511 0.90906 1.00331 1.06400 1.25538 1.03704 0.95077 1.07946 1.84191 0.95343 1.08831 1.73917 1.25374 1.03946 0.95614 1.21370 0.92895 0.80339 0.94820 0.94859 0.91100 0.91082 0.76308 0.88894 0.88910 0.83020 0.80952 0.81470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.98 13.97 55.49 0.78 -28.20 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.89 22.05 27.74 -169.99 -4.71 17.34 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.49 6.52 56.52 0.37 -6.13 16 7 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 9 N -0.75 -17.60 5.41 -59.91 -0.32 -17.93 16 10 C 0.15 2.67 6.37 -4.04 -0.03 2.64 16 11 C 0.11 1.68 5.79 -4.04 -0.02 1.66 16 12 N -0.72 -8.57 5.56 -60.29 -0.33 -8.90 16 13 C 0.51 6.80 7.91 -10.99 -0.09 6.71 16 14 O -0.52 -9.42 16.50 -14.36 -0.24 -9.66 16 15 C 0.04 0.42 5.35 36.00 0.19 0.61 16 16 O -0.28 -3.41 9.74 -40.39 -0.39 -3.81 16 17 C 0.12 1.21 6.64 -41.04 -0.27 0.93 16 18 C -0.14 -1.24 10.17 -41.10 -0.42 -1.66 16 19 C -0.19 -1.28 11.22 29.05 0.33 -0.96 16 20 S 0.12 0.81 23.34 -107.50 -2.51 -1.70 16 21 C -0.33 -2.71 10.09 29.12 0.29 -2.41 16 22 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 23 H 0.36 8.39 5.53 -40.82 -0.23 8.16 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.40 3.41 8.47 -40.82 -0.35 3.07 16 29 H 0.09 0.63 7.86 -51.93 -0.41 0.23 16 30 H 0.09 0.63 7.86 -51.93 -0.41 0.23 16 31 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.17 1.05 7.02 -52.49 -0.37 0.68 16 LS Contribution 304.28 15.07 4.59 4.59 Total: -1.00 -35.17 304.28 -7.30 -42.48 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -3.88 Total: 5.31 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.27 Total: 0.49 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.12 Total: -55.03 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.63 Total: -13.47 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.34 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.17 -7.30 -42.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147935337.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.878 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds