Wall clock time and date at job start Mon Mar 30 2020 00:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00164 * 2 1 4 4 H 1.48494 * 109.47329 * 269.99966 * 3 2 1 5 5 H 1.48500 * 109.47166 * 30.00169 * 3 2 1 6 6 H 1.48504 * 109.46858 * 149.99983 * 3 2 1 7 7 C 1.38818 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99812 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00208 * 180.02562 * 7 2 1 10 10 C 1.46492 * 120.00015 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47273 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47652 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00394 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00053 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00003 * 180.02562 * 13 12 11 16 16 O 1.42905 * 109.47208 * 180.02562 * 15 13 12 17 17 C 1.36232 * 117.00188 * 179.97438 * 16 15 13 18 18 C 1.38668 * 122.58400 * 179.97438 * 17 16 15 19 19 C 1.33433 * 114.88144 * 180.02562 * 18 17 16 20 20 S 1.75865 * 109.66167 * 359.75827 * 19 18 17 21 21 C 1.33630 * 122.58638 * 0.02643 * 17 16 15 22 22 H 0.96997 * 119.99532 * 0.02562 * 1 2 3 23 23 H 0.97005 * 119.99410 * 359.97438 * 9 7 2 24 24 H 1.09005 * 109.47692 * 59.99513 * 10 9 7 25 25 H 1.09001 * 109.47230 * 299.99273 * 10 9 7 26 26 H 1.09005 * 109.46732 * 59.99448 * 11 10 9 27 27 H 1.09005 * 109.47311 * 300.00092 * 11 10 9 28 28 H 0.97005 * 119.99361 * 0.02562 * 12 11 10 29 29 H 1.08997 * 109.47783 * 59.99584 * 15 13 12 30 30 H 1.09001 * 109.47298 * 299.99616 * 15 13 12 31 31 H 1.07996 * 122.55913 * 0.04163 * 18 17 16 32 32 H 1.08000 * 125.16852 * 180.02562 * 19 18 17 33 33 H 1.08002 * 125.19356 * 359.94691 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4709 -0.0011 11 6 5.6163 -2.1915 -0.0009 12 7 6.3488 -3.4601 -0.0014 13 6 7.6966 -3.4602 -0.0008 14 8 8.3030 -2.4099 -0.0002 15 6 8.4500 -4.7653 -0.0019 16 8 9.8550 -4.5042 -0.0003 17 6 10.6848 -5.5846 -0.0005 18 6 12.0663 -5.4651 0.0003 19 6 12.7300 -6.6227 -0.0006 20 16 11.5875 -7.9598 0.0044 21 6 10.2303 -6.8412 -0.0026 22 1 -0.4849 0.8401 -0.0004 23 1 3.8646 -0.3621 0.0004 24 1 3.8490 -3.0417 -0.8918 25 1 3.8485 -3.0435 0.8882 26 1 5.8796 -1.6206 0.8896 27 1 5.8797 -1.6191 -0.8904 28 1 5.8637 -4.3002 -0.0022 29 1 8.1871 -5.3359 -0.8925 30 1 8.1863 -5.3378 0.8874 31 1 12.5670 -4.5082 0.0019 32 1 13.8053 -6.7233 0.0003 33 1 9.1886 -7.1264 -0.0035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147935337.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:19 Heat of formation + Delta-G solvation = -42.756797 kcal Electronic energy + Delta-G solvation = -17139.972157 eV Core-core repulsion = 14099.763696 eV Total energy + Delta-G solvation = -3040.208461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.32728 -40.20080 -37.53120 -36.84265 -35.59077 -33.51932 -30.96413 -30.03088 -28.82877 -25.42136 -24.34304 -23.13278 -21.72817 -20.72594 -19.89361 -19.26989 -18.15741 -17.80308 -17.52209 -16.97130 -16.36996 -16.32203 -15.66379 -15.25917 -15.15894 -14.99767 -14.68824 -14.28968 -13.74695 -13.66249 -13.46305 -13.19809 -12.82937 -12.73094 -12.61778 -12.09231 -11.97036 -11.83839 -11.83116 -11.08847 -11.04368 -10.25390 -9.79115 -9.37024 -8.96072 -8.05866 -5.41181 0.02383 0.68467 1.01330 1.39074 1.40511 1.42804 1.47363 1.54222 1.72789 2.46148 2.64415 3.26050 3.49130 3.79864 3.94342 3.98412 4.06540 4.08156 4.19756 4.36181 4.45863 4.53699 4.93266 4.95835 4.97984 5.08569 5.23323 5.26989 5.72037 6.15939 6.17295 6.44704 7.02521 7.09748 7.77417 7.94234 9.14789 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.062060 B = 0.002559 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.067550 B =10941.069811 C =11366.387382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.061 4.061 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.254 1.254 7 C -0.237 4.237 8 H 0.065 0.935 9 N -0.760 5.760 10 C 0.150 3.850 11 C 0.123 3.877 12 N -0.703 5.703 13 C 0.512 3.488 14 O -0.574 6.574 15 C 0.049 3.951 16 O -0.312 6.312 17 C 0.093 3.907 18 C -0.169 4.169 19 C -0.178 4.178 20 S 0.142 5.858 21 C -0.329 4.329 22 H 0.259 0.741 23 H 0.366 0.634 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.422 0.578 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.199 0.801 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.264 -19.161 0.014 32.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.253 4.253 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.179 1.179 7 C -0.368 4.368 8 H 0.083 0.917 9 N -0.407 5.407 10 C 0.024 3.976 11 C -0.002 4.002 12 N -0.358 5.358 13 C 0.298 3.702 14 O -0.453 6.453 15 C -0.029 4.029 16 O -0.226 6.226 17 C 0.037 3.963 18 C -0.200 4.200 19 C -0.314 4.314 20 S 0.402 5.598 21 C -0.465 4.465 22 H 0.068 0.932 23 H 0.199 0.801 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.260 0.740 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.167 0.833 32 H 0.216 0.784 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 26.659 -19.882 0.026 33.257 hybrid contribution -0.665 2.413 -0.007 2.503 sum 25.994 -17.469 0.019 31.318 Atomic orbital electron populations 1.69864 1.07003 1.26809 1.59274 1.25490 0.96127 1.01227 1.02422 0.85460 0.78644 0.79838 0.78168 1.20403 1.22079 1.17870 1.19009 0.82170 0.93799 1.41781 0.91685 1.42569 1.02806 1.04002 1.91285 1.20843 0.88429 0.88247 1.00113 1.21261 0.90981 0.86054 1.01909 1.45477 1.05221 1.10372 1.74693 1.20640 0.82602 0.91095 0.75826 1.90745 1.68974 1.35227 1.50354 1.22558 0.79206 0.94340 1.06833 1.86145 1.16410 1.30371 1.89683 1.18151 0.90874 0.85925 1.01353 1.19680 0.90994 1.01112 1.08223 1.25888 1.05066 0.94414 1.06013 1.84137 0.94591 1.08072 1.72956 1.25688 1.05477 0.95243 1.20078 0.93192 0.80068 0.93720 0.93813 0.92110 0.91973 0.73978 0.85808 0.85833 0.83280 0.78367 0.79529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.08 13.97 21.65 0.30 -61.78 16 2 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 3 Si 0.95 45.44 27.74 68.60 1.90 47.35 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.25 -11.09 6.52 99.48 0.65 -10.44 16 7 C -0.24 -13.22 10.47 84.03 0.88 -12.34 16 8 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 9 N -0.76 -34.60 5.41 -343.45 -1.86 -36.45 16 10 C 0.15 5.10 6.37 86.38 0.55 5.65 16 11 C 0.12 3.60 5.79 86.38 0.50 4.10 16 12 N -0.70 -15.22 5.56 -463.06 -2.57 -17.79 16 13 C 0.51 12.82 7.91 87.66 0.69 13.51 16 14 O -0.57 -20.85 16.50 15.99 0.26 -20.58 16 15 C 0.05 0.80 5.35 71.23 0.38 1.18 16 16 O -0.31 -7.39 9.74 -77.17 -0.75 -8.14 16 17 C 0.09 1.78 6.64 21.33 0.14 1.92 16 18 C -0.17 -2.86 10.17 21.28 0.22 -2.64 16 19 C -0.18 -2.09 11.22 66.73 0.75 -1.34 16 20 S 0.14 1.61 23.34 -56.49 -1.32 0.29 16 21 C -0.33 -4.63 10.09 66.77 0.67 -3.96 16 22 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 23 H 0.37 16.24 5.53 -92.70 -0.51 15.73 16 24 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.42 5.82 8.47 -92.70 -0.79 5.03 16 29 H 0.12 1.26 7.86 -2.39 -0.02 1.24 16 30 H 0.12 1.26 7.86 -2.39 -0.02 1.24 16 31 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.19 1.68 7.02 -2.91 -0.02 1.66 16 Total: -1.00 -77.47 304.28 1.01 -76.46 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -0.21 Total: 17.64 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.25 Total: 3.00 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -4.13 Total: -116.02 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.49 Total: -28.73 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.35 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.32 Total: 0.29 kcal Total: -77.47 1.01 -76.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147935337.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.704 kcal (2) G-P(sol) polarization free energy of solvation -77.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds