Wall clock time and date at job start Mon Mar 30 2020 02:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35788 * 116.99688 * 2 1 4 4 C 1.38014 * 123.47394 * 359.97438 * 3 2 1 5 5 C 1.33617 * 115.08900 * 180.02562 * 4 3 2 6 6 S 1.70578 * 111.14234 * 359.97438 * 5 4 3 7 7 C 1.37271 * 123.46693 * 179.97438 * 3 2 1 8 8 C 1.41717 * 125.47925 * 359.96896 * 7 3 2 9 9 O 1.21776 * 120.00124 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99910 * 180.02562 * 8 7 3 11 11 C 1.46505 * 119.99816 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47143 * 180.02562 * 11 10 8 13 13 N 1.46505 * 109.47143 * 179.97438 * 12 11 10 14 14 C 1.36938 * 119.99680 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00253 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99839 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99538 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00301 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47351 * 89.99176 * 18 16 14 20 20 H 1.48499 * 109.46998 * 209.99881 * 18 16 14 21 21 H 1.48502 * 109.46890 * 329.99226 * 18 16 14 22 22 H 1.08997 * 109.47470 * 300.00656 * 1 2 3 23 23 H 1.09007 * 109.47002 * 60.00965 * 1 2 3 24 24 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 25 25 H 1.08000 * 122.45707 * 0.02562 * 4 3 2 26 26 H 1.07997 * 124.42778 * 180.26429 * 5 4 3 27 27 H 0.96996 * 120.00207 * 0.02562 * 10 8 7 28 28 H 1.08999 * 109.47340 * 300.00216 * 11 10 8 29 29 H 1.09007 * 109.47268 * 60.00500 * 11 10 8 30 30 H 1.08999 * 109.46951 * 300.00175 * 12 11 10 31 31 H 1.09007 * 109.47312 * 60.00252 * 12 11 10 32 32 H 0.96996 * 119.99977 * 0.02562 * 13 12 11 33 33 H 0.97004 * 119.99826 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3651 2.4108 -0.0005 5 6 2.1388 3.5002 -0.0010 6 16 3.7922 3.0806 -0.0001 7 6 3.4093 1.3646 0.0005 8 6 4.3567 0.3106 0.0017 9 8 3.9793 -0.8472 0.0019 10 7 5.6752 0.5897 0.0026 11 6 6.6546 -0.5000 0.0045 12 6 8.0683 0.0850 0.0059 13 7 9.0476 -1.0047 0.0083 14 6 10.3873 -0.7211 0.0104 15 1 10.7220 0.3058 0.0099 16 6 11.3153 -1.7535 0.0122 17 7 10.9073 -3.0049 0.0124 18 14 13.1428 -1.3668 0.0158 19 1 13.6243 -1.2642 1.4168 20 1 13.8794 -2.4506 -0.6828 21 1 13.3774 -0.0781 -0.6839 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.2865 2.4659 -0.0005 26 1 1.7661 4.5138 0.0027 27 1 5.9758 1.5119 0.0029 28 1 6.5145 -1.1129 0.8948 29 1 6.5161 -1.1145 -0.8852 30 1 8.2086 0.6982 -0.8843 31 1 8.2066 0.6992 0.8957 32 1 8.7471 -1.9269 0.0084 33 1 11.5558 -3.7263 0.0140 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148626176.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:07 Heat of formation + Delta-G solvation = -21.973482 kcal Electronic energy + Delta-G solvation = -17573.498060 eV Core-core repulsion = 14534.190831 eV Total energy + Delta-G solvation = -3039.307229 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39463 -38.97816 -36.22694 -35.52841 -33.74073 -31.38040 -30.38218 -28.02439 -26.86955 -24.98988 -23.50685 -21.61451 -21.15617 -19.83772 -18.70931 -17.36250 -16.90608 -16.14913 -16.14013 -15.32655 -15.15885 -14.83971 -14.50452 -14.09481 -13.83465 -13.50512 -13.14068 -12.91614 -12.91290 -12.68913 -11.84473 -11.37827 -11.35433 -11.27419 -11.05059 -10.78364 -10.75186 -10.08714 -9.84877 -9.66299 -9.13740 -8.91684 -8.70328 -8.31392 -6.94912 -5.75535 -3.06034 0.27502 1.18696 1.51232 2.10988 3.24080 3.42076 3.42578 3.45215 3.50788 3.52355 4.34756 4.61736 4.75439 4.80739 4.88152 5.11686 5.21784 5.30270 5.46798 5.54807 5.61950 5.85162 5.86193 6.02981 6.22742 6.57074 6.77365 6.83108 7.02294 7.69512 7.71418 8.41656 8.45201 9.53326 10.08689 10.43763 11.47136 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039132 B = 0.003299 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.351436 B = 8486.239303 C = 9175.840357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.270 6.270 3 C 0.184 3.816 4 C -0.213 4.213 5 C -0.201 4.201 6 S 0.230 5.770 7 C -0.319 4.319 8 C 0.590 3.410 9 O -0.523 6.523 10 N -0.725 5.725 11 C 0.114 3.886 12 C 0.144 3.856 13 N -0.729 5.729 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.103 0.897 25 H 0.150 0.850 26 H 0.174 0.826 27 H 0.393 0.607 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.386 0.614 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.734 15.220 -0.049 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.181 6.181 3 C 0.124 3.876 4 C -0.247 4.247 5 C -0.339 4.339 6 S 0.495 5.505 7 C -0.439 4.439 8 C 0.377 3.623 9 O -0.401 6.401 10 N -0.377 5.377 11 C -0.010 4.010 12 C 0.016 3.984 13 N -0.374 5.374 14 C -0.374 4.374 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.741 3.259 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.122 0.878 25 H 0.167 0.833 26 H 0.191 0.809 27 H 0.227 0.773 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.220 0.780 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -21.399 15.065 -0.057 26.170 hybrid contribution -0.665 -0.212 0.013 0.698 sum -22.064 14.853 -0.044 26.598 Atomic orbital electron populations 1.23186 0.78450 1.04479 1.01166 1.86365 1.20774 1.24020 1.86963 1.18291 0.90270 0.85490 0.93580 1.20046 1.02074 0.90946 1.11622 1.25041 0.99273 1.03718 1.05853 1.83096 1.03336 0.95651 1.68401 1.22833 0.95467 0.98303 1.27341 1.15521 0.81618 0.87725 0.77430 1.90885 1.79505 1.20062 1.49666 1.45820 1.05602 1.10235 1.76077 1.21559 0.87684 0.89051 1.02690 1.20764 0.86804 0.92428 0.98404 1.42193 1.01820 1.03768 1.89669 1.19201 0.82259 0.92656 1.43285 0.91026 1.24780 0.98162 0.95195 1.02762 1.69674 1.33123 0.97813 1.57283 0.86145 0.85167 0.77066 0.77521 1.21656 1.21720 1.20713 0.92621 0.92617 0.87815 0.83282 0.80878 0.77322 0.91170 0.91161 0.95775 0.95780 0.77970 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.94 101.05 1.00 1.18 16 2 O -0.27 -3.65 9.36 -36.59 -0.34 -3.99 16 3 C 0.18 2.31 6.70 -40.02 -0.27 2.04 16 4 C -0.21 -1.84 9.17 -41.28 -0.38 -2.22 16 5 C -0.20 -1.46 10.90 29.11 0.32 -1.14 16 6 S 0.23 2.06 22.00 -107.50 -2.37 -0.31 16 7 C -0.32 -4.35 6.28 -38.61 -0.24 -4.60 16 8 C 0.59 10.10 7.59 -14.93 -0.11 9.98 16 9 O -0.52 -11.03 15.84 -12.40 -0.20 -11.23 16 10 N -0.73 -11.45 5.54 -63.19 -0.35 -11.80 16 11 C 0.11 2.12 5.79 -4.04 -0.02 2.09 16 12 C 0.14 2.95 6.37 -4.04 -0.03 2.93 16 13 N -0.73 -19.06 5.60 -59.90 -0.34 -19.40 16 14 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 15 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 18 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H 0.06 0.33 7.88 -51.93 -0.41 -0.08 16 23 H 0.06 0.33 7.88 -51.93 -0.41 -0.08 16 24 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.15 0.87 6.99 -52.49 -0.37 0.51 16 26 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 27 H 0.39 5.10 7.44 -40.82 -0.30 4.79 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.39 10.68 7.67 -40.82 -0.31 10.36 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 303.30 15.07 4.57 4.57 Total: -1.00 -35.71 303.30 -7.18 -42.89 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -3.88 Total: 6.95 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 0.02 Total: 2.75 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.04 Total: -59.18 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.54 Total: -15.22 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.37 Total: -0.31 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.71 -7.18 -42.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148626176.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.915 kcal (2) G-P(sol) polarization free energy of solvation -35.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds