Wall clock time and date at job start Mon Mar 30 2020 02:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35788 * 116.99688 * 2 1 4 4 C 1.38014 * 123.47394 * 359.97438 * 3 2 1 5 5 C 1.33617 * 115.08900 * 180.02562 * 4 3 2 6 6 S 1.70578 * 111.14234 * 359.97438 * 5 4 3 7 7 C 1.37271 * 123.46693 * 179.97438 * 3 2 1 8 8 C 1.41717 * 125.47925 * 359.96896 * 7 3 2 9 9 O 1.21776 * 120.00124 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99910 * 180.02562 * 8 7 3 11 11 C 1.46505 * 119.99816 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47143 * 180.02562 * 11 10 8 13 13 N 1.46505 * 109.47143 * 179.97438 * 12 11 10 14 14 C 1.36938 * 119.99680 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00253 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99839 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99538 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00301 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47351 * 89.99176 * 18 16 14 20 20 H 1.48499 * 109.46998 * 209.99881 * 18 16 14 21 21 H 1.48502 * 109.46890 * 329.99226 * 18 16 14 22 22 H 1.08997 * 109.47470 * 300.00656 * 1 2 3 23 23 H 1.09007 * 109.47002 * 60.00965 * 1 2 3 24 24 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 25 25 H 1.08000 * 122.45707 * 0.02562 * 4 3 2 26 26 H 1.07997 * 124.42778 * 180.26429 * 5 4 3 27 27 H 0.96996 * 120.00207 * 0.02562 * 10 8 7 28 28 H 1.08999 * 109.47340 * 300.00216 * 11 10 8 29 29 H 1.09007 * 109.47268 * 60.00500 * 11 10 8 30 30 H 1.08999 * 109.46951 * 300.00175 * 12 11 10 31 31 H 1.09007 * 109.47312 * 60.00252 * 12 11 10 32 32 H 0.96996 * 119.99977 * 0.02562 * 13 12 11 33 33 H 0.97004 * 119.99826 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3651 2.4108 -0.0005 5 6 2.1388 3.5002 -0.0010 6 16 3.7922 3.0806 -0.0001 7 6 3.4093 1.3646 0.0005 8 6 4.3567 0.3106 0.0017 9 8 3.9793 -0.8472 0.0019 10 7 5.6752 0.5897 0.0026 11 6 6.6546 -0.5000 0.0045 12 6 8.0683 0.0850 0.0059 13 7 9.0476 -1.0047 0.0083 14 6 10.3873 -0.7211 0.0104 15 1 10.7220 0.3058 0.0099 16 6 11.3153 -1.7535 0.0122 17 7 10.9073 -3.0049 0.0124 18 14 13.1428 -1.3668 0.0158 19 1 13.6243 -1.2642 1.4168 20 1 13.8794 -2.4506 -0.6828 21 1 13.3774 -0.0781 -0.6839 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.2865 2.4659 -0.0005 26 1 1.7661 4.5138 0.0027 27 1 5.9758 1.5119 0.0029 28 1 6.5145 -1.1129 0.8948 29 1 6.5161 -1.1145 -0.8852 30 1 8.2086 0.6982 -0.8843 31 1 8.2066 0.6992 0.8957 32 1 8.7471 -1.9269 0.0084 33 1 11.5558 -3.7263 0.0140 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148626176.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:06 Heat of formation + Delta-G solvation = -48.989597 kcal Electronic energy + Delta-G solvation = -17574.669567 eV Core-core repulsion = 14534.190831 eV Total energy + Delta-G solvation = -3040.478736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36372 -40.15767 -37.33555 -36.92500 -35.48835 -33.24449 -31.47586 -29.44964 -27.81668 -26.05910 -25.19261 -23.22566 -22.40198 -20.64509 -19.83296 -19.25162 -17.96813 -17.24251 -17.04341 -16.64208 -16.49033 -16.27328 -15.82071 -15.22404 -15.16232 -14.98204 -14.71580 -14.47271 -13.76155 -13.45264 -13.08613 -13.03912 -12.66719 -12.59457 -12.46872 -12.08210 -12.02904 -11.94079 -11.85242 -11.13455 -10.99148 -10.28560 -9.79143 -9.07909 -9.07231 -7.96194 -5.28249 -0.52607 0.43090 0.82989 1.32835 1.48894 1.51915 1.60333 2.12234 2.22466 2.51215 2.59137 3.37818 3.69870 3.93662 4.06398 4.14912 4.19699 4.25425 4.30589 4.38221 4.55819 4.62932 4.71033 4.87077 4.98893 5.10879 5.12229 5.33530 5.49039 6.24031 6.26359 6.49065 7.18404 7.30191 8.01049 8.25288 9.27665 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039132 B = 0.003299 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.351436 B = 8486.239303 C = 9175.840357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.312 6.312 3 C 0.184 3.816 4 C -0.225 4.225 5 C -0.169 4.169 6 S 0.265 5.735 7 C -0.381 4.381 8 C 0.587 3.413 9 O -0.579 6.579 10 N -0.715 5.715 11 C 0.130 3.870 12 C 0.150 3.850 13 N -0.747 5.747 14 C -0.249 4.249 15 H 0.084 0.916 16 C -0.078 4.078 17 N -0.972 5.972 18 Si 0.982 3.018 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.265 1.265 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.109 0.891 25 H 0.180 0.820 26 H 0.217 0.783 27 H 0.409 0.591 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.374 0.626 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.730 18.730 -0.062 30.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.224 6.224 3 C 0.122 3.878 4 C -0.257 4.257 5 C -0.308 4.308 6 S 0.530 5.470 7 C -0.500 4.500 8 C 0.378 3.622 9 O -0.461 6.461 10 N -0.368 5.368 11 C 0.006 3.994 12 C 0.023 3.977 13 N -0.390 5.390 14 C -0.381 4.381 15 H 0.102 0.898 16 C -0.270 4.270 17 N -0.622 5.622 18 Si 0.810 3.190 19 H -0.212 1.212 20 H -0.223 1.223 21 H -0.189 1.189 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.127 0.873 25 H 0.198 0.802 26 H 0.234 0.766 27 H 0.245 0.755 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.205 0.795 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -22.414 18.660 -0.070 29.165 hybrid contribution -0.527 -1.190 0.019 1.301 sum -22.942 17.470 -0.052 28.836 Atomic orbital electron populations 1.23494 0.75860 1.05619 1.03101 1.86305 1.23737 1.25568 1.86756 1.18805 0.90338 0.86506 0.92173 1.20238 1.03657 0.89481 1.12333 1.25618 0.98020 1.05311 1.01802 1.82894 1.04537 0.91667 1.67873 1.22744 0.95434 1.00245 1.31583 1.16034 0.82043 0.88056 0.76029 1.90836 1.80306 1.22545 1.52453 1.45603 1.05006 1.10241 1.75982 1.21146 0.87623 0.89535 1.01116 1.20838 0.86322 0.91169 0.99355 1.42430 1.02340 1.04477 1.89796 1.19675 0.83349 0.93219 1.41830 0.89769 1.25709 1.02961 0.95058 1.03264 1.69852 1.34422 0.98815 1.59110 0.85021 0.79269 0.77199 0.77516 1.21221 1.22286 1.18908 0.90601 0.90594 0.87305 0.80233 0.76587 0.75508 0.92870 0.92856 0.94332 0.94331 0.79466 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.94 113.37 1.13 1.32 16 2 O -0.31 -8.52 9.36 -74.43 -0.70 -9.22 16 3 C 0.18 4.46 6.70 21.99 0.15 4.61 16 4 C -0.22 -3.14 9.17 21.17 0.19 -2.94 16 5 C -0.17 -1.72 10.90 66.77 0.73 -0.99 16 6 S 0.27 4.07 22.00 -56.49 -1.24 2.83 16 7 C -0.38 -10.29 6.28 22.90 0.14 -10.15 16 8 C 0.59 20.90 7.59 85.10 0.65 21.54 16 9 O -0.58 -26.01 15.84 12.16 0.19 -25.82 16 10 N -0.72 -22.99 5.54 -472.01 -2.62 -25.60 16 11 C 0.13 5.03 5.79 86.38 0.50 5.53 16 12 C 0.15 6.12 6.37 86.38 0.55 6.67 16 13 N -0.75 -39.57 5.60 -343.43 -1.92 -41.49 16 14 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 15 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 16 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 17 N -0.97 -61.19 13.06 21.65 0.28 -60.90 16 18 Si 0.98 46.42 29.55 68.60 2.03 48.44 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H 0.08 0.74 7.88 -2.39 -0.02 0.72 16 23 H 0.08 0.74 7.88 -2.38 -0.02 0.72 16 24 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.18 1.31 6.99 -2.91 -0.02 1.29 16 26 H 0.22 0.33 8.06 -2.91 -0.02 0.31 16 27 H 0.41 10.33 7.44 -92.71 -0.69 9.64 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.37 21.39 7.67 -92.71 -0.71 20.68 16 33 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -80.46 303.30 1.11 -79.35 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.25 Total: 24.20 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.34 Total: 8.22 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -4.26 Total: -128.00 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.50 Total: -35.04 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.24 Total: 2.83 kcal Total: -80.46 1.11 -79.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148626176.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.356 kcal (2) G-P(sol) polarization free energy of solvation -80.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds