Wall clock time and date at job start Mon Mar 30 2020 02:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42101 * 108.57760 * 2 1 4 4 O 1.42089 * 108.57828 * 228.97363 * 2 1 3 5 5 C 1.81403 * 101.92092 * 114.48467 * 2 1 3 6 6 C 1.52993 * 109.47114 * 180.02562 * 5 2 1 7 7 N 1.46501 * 109.47472 * 180.02562 * 6 5 2 8 8 C 1.39718 * 120.00316 * 179.97438 * 7 6 5 9 9 C 1.39339 * 120.36260 * 359.44998 * 8 7 6 10 10 N 1.31986 * 121.20809 * 179.72300 * 9 8 7 11 11 C 1.31502 * 122.05592 * 0.58972 * 10 9 8 12 12 C 1.40759 * 120.56038 * 359.67812 * 11 10 9 13 13 C 1.41433 * 120.61839 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99710 * 155.61712 * 13 12 11 15 15 C 1.39931 * 119.99712 * 335.60918 * 13 12 11 16 16 N 1.30832 * 120.00111 * 342.37204 * 15 13 12 17 17 Si 1.86807 * 119.99705 * 162.37012 * 15 13 12 18 18 H 1.48500 * 109.46736 * 94.68221 * 17 15 13 19 19 H 1.48499 * 109.46884 * 214.67555 * 17 15 13 20 20 H 1.48491 * 109.46997 * 334.67832 * 17 15 13 21 21 C 1.38653 * 120.36473 * 179.72162 * 8 7 6 22 22 H 1.09006 * 109.47074 * 305.51211 * 1 2 3 23 23 H 1.08994 * 109.47231 * 65.51574 * 1 2 3 24 24 H 1.09004 * 109.46954 * 185.51558 * 1 2 3 25 25 H 1.09004 * 109.46987 * 59.99879 * 5 2 1 26 26 H 1.09002 * 109.46805 * 300.00078 * 5 2 1 27 27 H 1.09004 * 109.47403 * 59.99998 * 6 5 2 28 28 H 1.09007 * 109.47239 * 300.00135 * 6 5 2 29 29 H 0.97002 * 119.99297 * 359.72119 * 7 6 5 30 30 H 1.08000 * 119.39561 * 359.97438 * 9 8 7 31 31 H 1.07999 * 119.71454 * 179.70175 * 11 10 9 32 32 H 0.97007 * 119.99626 * 179.97438 * 16 15 13 33 33 H 1.08004 * 120.92899 * 359.96268 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7985 7 7 4.0081 -1.4130 3.1028 8 6 5.3363 -1.5928 3.4973 9 6 6.3789 -1.2198 2.6515 10 7 7.6395 -1.3771 3.0095 11 6 7.9760 -1.9001 4.1681 12 6 6.9874 -2.3099 5.0825 13 6 7.3479 -2.8720 6.3292 14 1 6.6625 -2.8224 7.1623 15 6 8.5926 -3.4926 6.4832 16 7 9.2736 -3.8632 5.4293 17 14 9.2818 -3.7919 8.1934 18 1 8.9316 -5.1659 8.6347 19 1 10.7590 -3.6427 8.1648 20 1 8.7028 -2.8052 9.1401 21 6 5.6314 -2.1495 4.7324 22 1 -0.3633 0.5970 0.8366 23 1 -0.3633 0.4259 -0.9352 24 1 -0.3633 -1.0229 0.0988 25 1 1.7610 -1.7369 1.6666 26 1 1.7610 -0.1169 2.4042 27 1 4.1328 0.1831 1.7474 28 1 4.1335 -1.4367 1.0095 29 1 3.2863 -1.6785 3.6939 30 1 6.1514 -0.7903 1.6870 31 1 9.0197 -2.0158 4.4204 32 1 10.1366 -4.2931 5.5361 33 1 4.8442 -2.4516 5.4074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162323661.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:36 Heat of formation + Delta-G solvation = -42.310545 kcal Electronic energy + Delta-G solvation = -17733.198029 eV Core-core repulsion = 14693.008919 eV Total energy + Delta-G solvation = -3040.189110 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.48708 -37.20771 -36.29200 -35.89521 -33.83798 -31.72127 -30.42211 -29.91673 -27.38311 -25.64151 -23.41392 -21.60984 -20.63570 -19.10598 -17.68264 -16.85171 -16.47320 -16.35732 -15.66928 -15.28019 -15.02762 -14.94165 -14.64198 -13.71691 -13.57116 -13.43748 -13.04984 -12.71271 -12.30169 -12.28482 -12.20748 -11.86755 -11.48538 -11.43243 -11.34827 -11.21083 -10.98850 -10.82920 -10.59370 -10.15418 -9.57355 -9.35430 -8.00531 -7.73064 -6.87991 -6.51282 -4.47533 -0.33504 2.45319 2.73772 3.04195 3.07711 3.09213 3.21347 3.31745 3.71708 3.86772 4.11605 4.36446 4.38417 4.42669 4.64929 4.72280 5.16248 5.25890 5.62810 5.69351 5.80222 6.20917 6.44933 6.61695 6.80302 7.06909 7.13758 7.46917 7.60122 7.97699 8.24683 8.30147 8.38106 8.76078 8.84258 9.86525 10.09446 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.054249 B = 0.003336 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.017748 B = 8391.131925 C = 8655.672151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.432 3.568 3 O -0.935 6.935 4 O -0.934 6.934 5 C -0.627 4.627 6 C 0.147 3.853 7 N -0.752 5.752 8 C 0.179 3.821 9 C -0.105 4.105 10 N -0.450 5.450 11 C 0.010 3.990 12 C 0.097 3.903 13 C -0.452 4.452 14 H 0.080 0.920 15 C 0.076 3.924 16 N -0.784 5.784 17 Si 0.912 3.088 18 H -0.270 1.270 19 H -0.273 1.273 20 H -0.260 1.260 21 C -0.267 4.267 22 H 0.128 0.872 23 H 0.129 0.871 24 H 0.128 0.872 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.391 0.609 30 H 0.115 0.885 31 H 0.148 0.852 32 H 0.285 0.715 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.788 4.012 -4.847 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.612 3.388 3 O -0.932 6.932 4 O -0.931 6.931 5 C -0.756 4.756 6 C 0.020 3.980 7 N -0.388 5.388 8 C 0.078 3.922 9 C -0.261 4.261 10 N -0.157 5.157 11 C -0.157 4.157 12 C 0.092 3.908 13 C -0.482 4.482 14 H 0.098 0.902 15 C -0.143 4.143 16 N -0.409 5.409 17 Si 0.736 3.264 18 H -0.195 1.195 19 H -0.198 1.198 20 H -0.183 1.183 21 C -0.297 4.297 22 H 0.147 0.853 23 H 0.148 0.852 24 H 0.147 0.853 25 H 0.155 0.845 26 H 0.154 0.846 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.225 0.775 30 H 0.132 0.868 31 H 0.165 0.835 32 H 0.096 0.904 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.358 4.550 -6.393 16.363 hybrid contribution -1.421 -0.978 2.225 2.815 sum -15.779 3.573 -4.169 16.707 Atomic orbital electron populations 1.30286 1.26939 1.11564 1.11780 1.07580 0.78177 0.75784 0.77284 1.93619 1.78860 1.34392 1.86314 1.93620 1.78843 1.67035 1.53649 1.30625 1.06614 1.14387 1.23933 1.20705 0.88616 0.99667 0.88974 1.44188 1.04814 1.71962 1.17800 1.18536 0.83589 0.95657 0.94400 1.21310 0.87755 1.16403 1.00648 1.67025 1.19251 1.11038 1.18407 1.22847 0.99885 1.02429 0.90580 1.18307 0.90630 0.88302 0.93563 1.19522 1.00356 1.31451 0.96863 0.90203 1.25982 0.96294 0.93174 0.98892 1.69809 1.12588 1.27260 1.31228 0.86237 0.78660 0.79456 0.82044 1.19525 1.19817 1.18345 1.20721 0.96512 1.15867 0.96605 0.85337 0.85211 0.85327 0.84544 0.84570 0.91290 0.91266 0.77521 0.86755 0.83465 0.90434 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.61 10.62 101.05 1.07 -1.53 16 2 S 2.43 20.00 5.36 -107.50 -0.58 19.42 16 3 O -0.93 -11.49 18.10 -57.83 -1.05 -12.54 16 4 O -0.93 -11.58 18.10 -57.83 -1.05 -12.63 16 5 C -0.63 -5.06 5.92 37.15 0.22 -4.84 16 6 C 0.15 2.05 4.93 -4.04 -0.02 2.03 16 7 N -0.75 -12.74 5.74 -58.57 -0.34 -13.07 16 8 C 0.18 4.03 6.66 -83.70 -0.56 3.47 16 9 C -0.11 -2.55 10.49 -17.08 -0.18 -2.73 16 10 N -0.45 -12.08 10.33 -12.37 -0.13 -12.21 16 11 C 0.01 0.27 9.89 -16.74 -0.17 0.11 16 12 C 0.10 2.62 5.58 -106.69 -0.60 2.02 16 13 C -0.45 -11.77 9.08 -37.73 -0.34 -12.11 16 14 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 15 C 0.08 1.86 5.15 -17.34 -0.09 1.78 16 16 N -0.78 -20.06 10.96 55.55 0.61 -19.45 16 17 Si 0.91 18.11 29.59 -169.99 -5.03 13.08 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 C -0.27 -6.51 9.80 -38.40 -0.38 -6.89 16 22 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 23 H 0.13 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.13 0.30 8.14 -51.92 -0.42 -0.13 16 25 H 0.14 0.80 8.14 -51.92 -0.42 0.37 16 26 H 0.14 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.07 0.99 7.98 -51.93 -0.41 0.58 16 28 H 0.07 1.01 7.94 -51.92 -0.41 0.60 16 29 H 0.39 5.62 8.49 -40.82 -0.35 5.28 16 30 H 0.11 2.51 6.73 -52.49 -0.35 2.16 16 31 H 0.15 4.13 6.15 -52.49 -0.32 3.81 16 32 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 33 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -35.58 299.88 -8.00 -43.58 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -3.93 Total: 8.00 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -1.03 Total: -18.71 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.15 Total: -44.73 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -2.09 Total: -25.17 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 20.00 SS G_CDS: -0.58 Total: 19.42 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.58 -8.00 -43.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162323661.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.271 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds