Wall clock time and date at job start Mon Mar 30 2020 02:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42101 * 108.57760 * 2 1 4 4 O 1.42089 * 108.57828 * 228.97363 * 2 1 3 5 5 C 1.81403 * 101.92092 * 114.48467 * 2 1 3 6 6 C 1.52993 * 109.47114 * 180.02562 * 5 2 1 7 7 N 1.46501 * 109.47472 * 180.02562 * 6 5 2 8 8 C 1.39718 * 120.00316 * 179.97438 * 7 6 5 9 9 C 1.39339 * 120.36260 * 359.44998 * 8 7 6 10 10 N 1.31986 * 121.20809 * 179.72300 * 9 8 7 11 11 C 1.31502 * 122.05592 * 0.58972 * 10 9 8 12 12 C 1.40759 * 120.56038 * 359.67812 * 11 10 9 13 13 C 1.41433 * 120.61839 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99710 * 155.61712 * 13 12 11 15 15 C 1.39931 * 119.99712 * 335.60918 * 13 12 11 16 16 N 1.30832 * 120.00111 * 342.37204 * 15 13 12 17 17 Si 1.86807 * 119.99705 * 162.37012 * 15 13 12 18 18 H 1.48500 * 109.46736 * 94.68221 * 17 15 13 19 19 H 1.48499 * 109.46884 * 214.67555 * 17 15 13 20 20 H 1.48491 * 109.46997 * 334.67832 * 17 15 13 21 21 C 1.38653 * 120.36473 * 179.72162 * 8 7 6 22 22 H 1.09006 * 109.47074 * 305.51211 * 1 2 3 23 23 H 1.08994 * 109.47231 * 65.51574 * 1 2 3 24 24 H 1.09004 * 109.46954 * 185.51558 * 1 2 3 25 25 H 1.09004 * 109.46987 * 59.99879 * 5 2 1 26 26 H 1.09002 * 109.46805 * 300.00078 * 5 2 1 27 27 H 1.09004 * 109.47403 * 59.99998 * 6 5 2 28 28 H 1.09007 * 109.47239 * 300.00135 * 6 5 2 29 29 H 0.97002 * 119.99297 * 359.72119 * 7 6 5 30 30 H 1.08000 * 119.39561 * 359.97438 * 9 8 7 31 31 H 1.07999 * 119.71454 * 179.70175 * 11 10 9 32 32 H 0.97007 * 119.99626 * 179.97438 * 16 15 13 33 33 H 1.08004 * 120.92899 * 359.96268 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7985 7 7 4.0081 -1.4130 3.1028 8 6 5.3363 -1.5928 3.4973 9 6 6.3789 -1.2198 2.6515 10 7 7.6395 -1.3771 3.0095 11 6 7.9760 -1.9001 4.1681 12 6 6.9874 -2.3099 5.0825 13 6 7.3479 -2.8720 6.3292 14 1 6.6625 -2.8224 7.1623 15 6 8.5926 -3.4926 6.4832 16 7 9.2736 -3.8632 5.4293 17 14 9.2818 -3.7919 8.1934 18 1 8.9316 -5.1659 8.6347 19 1 10.7590 -3.6427 8.1648 20 1 8.7028 -2.8052 9.1401 21 6 5.6314 -2.1495 4.7324 22 1 -0.3633 0.5970 0.8366 23 1 -0.3633 0.4259 -0.9352 24 1 -0.3633 -1.0229 0.0988 25 1 1.7610 -1.7369 1.6666 26 1 1.7610 -0.1169 2.4042 27 1 4.1328 0.1831 1.7474 28 1 4.1335 -1.4367 1.0095 29 1 3.2863 -1.6785 3.6939 30 1 6.1514 -0.7903 1.6870 31 1 9.0197 -2.0158 4.4204 32 1 10.1366 -4.2931 5.5361 33 1 4.8442 -2.4516 5.4074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162323661.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:36 Heat of formation + Delta-G solvation = -71.251108 kcal Electronic energy + Delta-G solvation = -17734.452986 eV Core-core repulsion = 14693.008919 eV Total energy + Delta-G solvation = -3041.444067 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33475 -37.99437 -37.44017 -37.00369 -35.69596 -33.18775 -32.14014 -30.36429 -28.93590 -27.56171 -24.68878 -23.47731 -22.38094 -19.84870 -19.38721 -17.88299 -17.44785 -17.32825 -17.19179 -16.86491 -16.54537 -16.19077 -15.90361 -15.20660 -14.71911 -14.32064 -13.97715 -13.87393 -13.49224 -13.35007 -13.16033 -13.09571 -13.03115 -12.96619 -12.88241 -12.68496 -12.46314 -12.04997 -11.91118 -11.50573 -11.21534 -11.18213 -9.97685 -9.70565 -8.73273 -8.21934 -6.46010 -0.95421 0.90749 1.14354 1.41501 1.53999 1.59273 1.88206 2.20304 2.50330 2.75931 2.91207 3.14008 3.52446 3.76477 3.87101 4.15935 4.27200 4.29580 4.36574 4.55692 4.62937 4.75910 4.83301 4.86473 5.02351 5.19376 5.27488 5.60255 5.71926 6.03448 6.36849 6.48146 6.76747 6.81652 7.05361 7.87011 8.26991 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.054249 B = 0.003336 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.017748 B = 8391.131925 C = 8655.672151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.626 4.626 2 S 2.432 3.568 3 O -0.986 6.986 4 O -0.987 6.987 5 C -0.617 4.617 6 C 0.129 3.871 7 N -0.735 5.735 8 C 0.194 3.806 9 C -0.124 4.124 10 N -0.468 5.468 11 C -0.027 4.027 12 C 0.074 3.926 13 C -0.480 4.480 14 H 0.087 0.913 15 C 0.035 3.965 16 N -0.817 5.817 17 Si 0.992 3.008 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.255 1.255 21 C -0.283 4.283 22 H 0.157 0.843 23 H 0.140 0.860 24 H 0.156 0.844 25 H 0.167 0.833 26 H 0.168 0.832 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.407 0.593 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.293 0.707 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.779 3.743 -3.708 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.780 4.780 2 S 2.619 3.381 3 O -0.983 6.983 4 O -0.984 6.984 5 C -0.745 4.745 6 C 0.004 3.996 7 N -0.370 5.370 8 C 0.090 3.910 9 C -0.282 4.282 10 N -0.175 5.175 11 C -0.193 4.193 12 C 0.068 3.932 13 C -0.509 4.509 14 H 0.105 0.895 15 C -0.182 4.182 16 N -0.442 5.442 17 Si 0.811 3.189 18 H -0.184 1.184 19 H -0.191 1.191 20 H -0.179 1.179 21 C -0.314 4.314 22 H 0.175 0.825 23 H 0.159 0.841 24 H 0.175 0.825 25 H 0.185 0.815 26 H 0.186 0.814 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.244 0.756 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.104 0.896 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.343 4.287 -5.276 18.628 hybrid contribution -0.672 -0.870 1.759 2.075 sum -18.016 3.416 -3.517 18.671 Atomic orbital electron populations 1.30020 1.19956 1.14244 1.13742 1.07203 0.80580 0.73923 0.76444 1.93557 1.81449 1.36497 1.86797 1.93557 1.81459 1.67759 1.55625 1.30547 1.02197 1.17025 1.24717 1.20905 0.93175 0.98641 0.86910 1.44203 1.03005 1.70733 1.19077 1.18503 0.85788 0.93431 0.93267 1.21691 0.87658 1.17021 1.01817 1.66925 1.20915 1.11242 1.18448 1.22628 0.99516 1.05359 0.91775 1.18620 0.91744 0.88749 0.94039 1.19848 1.01828 1.32313 0.96943 0.89469 1.26951 0.95915 0.92140 1.03208 1.69874 1.13160 1.27412 1.33754 0.85054 0.77921 0.79652 0.76250 1.18415 1.19097 1.17851 1.20932 0.96122 1.16585 0.97732 0.82477 0.84150 0.82544 0.81530 0.81389 0.92134 0.92383 0.75615 0.85038 0.85188 0.89589 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.95 10.62 113.37 1.20 -0.74 16 2 S 2.43 35.70 5.36 -56.49 -0.30 35.39 16 3 O -0.99 -23.80 18.10 -127.37 -2.30 -26.11 16 4 O -0.99 -24.11 18.10 -127.37 -2.30 -26.42 16 5 C -0.62 -7.96 5.92 71.98 0.43 -7.54 16 6 C 0.13 3.43 4.93 86.38 0.43 3.86 16 7 N -0.74 -23.57 5.74 -339.23 -1.95 -25.51 16 8 C 0.19 8.70 6.66 38.25 0.25 8.95 16 9 C -0.12 -6.16 10.49 84.93 0.89 -5.27 16 10 N -0.47 -26.12 10.33 -193.05 -1.99 -28.11 16 11 C -0.03 -1.55 9.89 85.36 0.84 -0.70 16 12 C 0.07 4.08 5.58 -21.21 -0.12 3.96 16 13 C -0.48 -25.42 9.08 23.47 0.21 -25.20 16 14 H 0.09 4.32 7.90 -2.91 -0.02 4.30 16 15 C 0.03 1.71 5.15 85.25 0.44 2.15 16 16 N -0.82 -42.89 10.96 21.82 0.24 -42.66 16 17 Si 0.99 36.91 29.59 68.60 2.03 38.94 16 18 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 19 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 20 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 21 C -0.28 -13.86 9.80 23.04 0.23 -13.63 16 22 H 0.16 -0.25 8.14 -2.39 -0.02 -0.26 16 23 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.16 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.17 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.17 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.72 7.98 -2.38 -0.02 1.71 16 28 H 0.06 1.69 7.94 -2.38 -0.02 1.67 16 29 H 0.41 10.46 8.49 -92.71 -0.79 9.68 16 30 H 0.13 5.88 6.73 -2.91 -0.02 5.87 16 31 H 0.13 7.76 6.15 -2.91 -0.02 7.75 16 32 H 0.29 13.79 8.30 -92.70 -0.77 13.02 16 33 H 0.12 5.15 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -81.83 299.88 -1.43 -83.26 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.35 Total: 25.39 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 4.81 Total: -34.17 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -3.70 Total: -96.28 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: -4.61 Total: -52.52 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.94 kcal Atomic # 16 Polarization: 35.70 SS G_CDS: -0.30 Total: 35.39 kcal Total: -81.83 -1.43 -83.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162323661.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.008 kcal (2) G-P(sol) polarization free energy of solvation -81.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds