Wall clock time and date at job start Mon Mar 30 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34803 * 117.00165 * 2 1 4 4 O 1.21557 * 120.00322 * 359.97438 * 3 2 1 5 5 C 1.47070 * 120.00039 * 179.97438 * 3 2 1 6 6 C 1.40344 * 120.54720 * 5.65511 * 5 3 2 7 7 C 1.38048 * 118.40953 * 180.02562 * 6 5 3 8 8 F 1.35102 * 120.28159 * 179.97438 * 7 6 5 9 9 C 1.39502 * 119.43674 * 0.02562 * 7 6 5 10 10 O 1.35524 * 119.46236 * 180.02562 * 9 7 6 11 11 C 1.42898 * 117.00326 * 179.97438 * 10 9 7 12 12 N 1.32229 * 121.07965 * 359.71864 * 9 7 6 13 13 C 1.32460 * 121.72838 * 0.56838 * 12 9 7 14 14 N 1.38227 * 119.78127 * 179.71021 * 13 12 9 15 15 C 1.36886 * 119.99947 * 354.21813 * 14 13 12 16 16 H 1.08007 * 119.99804 * 0.02562 * 15 14 13 17 17 C 1.38857 * 120.00277 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99944 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00079 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47285 * 89.99959 * 19 17 15 21 21 H 1.48499 * 109.47030 * 210.00232 * 19 17 15 22 22 H 1.48500 * 109.47256 * 329.99790 * 19 17 15 23 23 H 1.09001 * 109.47076 * 60.00326 * 1 2 3 24 24 H 1.08996 * 109.47450 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47196 * 300.00607 * 1 2 3 26 26 H 1.08003 * 120.79420 * 359.97438 * 6 5 3 27 27 H 1.08997 * 109.47425 * 59.99500 * 11 10 9 28 28 H 1.09000 * 109.47794 * 180.02562 * 11 10 9 29 29 H 1.09007 * 109.47084 * 300.00030 * 11 10 9 30 30 H 0.96993 * 120.00252 * 173.94631 * 14 13 12 31 31 H 0.96999 * 119.99797 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4020 2.2206 -0.0005 5 6 3.5327 1.2780 0.0006 6 6 4.3080 0.1142 -0.1180 7 6 5.6829 0.2375 -0.1118 8 9 6.4657 -0.8581 -0.2232 9 6 6.2573 1.5028 0.0113 10 8 7.6070 1.6245 0.0169 11 6 8.1390 2.9445 0.1452 12 7 5.5063 2.5860 0.1167 13 6 4.1834 2.5187 0.1214 14 7 3.4375 3.6764 0.2396 15 6 4.0621 4.8725 0.4701 16 1 5.1378 4.9116 0.5591 17 6 3.3128 6.0354 0.5895 18 7 2.0030 5.9879 0.4806 19 14 4.1653 7.6677 0.9032 20 1 4.4972 8.3102 -0.3938 21 1 3.2632 8.5561 1.6793 22 1 5.4131 7.4344 1.6738 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.8401 -0.8548 -0.2110 27 1 7.8015 3.3826 1.0845 28 1 9.2280 2.9001 0.1351 29 1 7.7930 3.5581 -0.6867 30 1 2.4718 3.6420 0.1554 31 1 1.4795 6.8002 0.5643 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163177121.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:56 Heat of formation + Delta-G solvation = -121.826262 kcal Electronic energy + Delta-G solvation = -20714.664234 eV Core-core repulsion = 17104.813888 eV Total energy + Delta-G solvation = -3609.850346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.78385 -40.11389 -39.17423 -37.53546 -35.80724 -35.07263 -32.23142 -31.45820 -28.87940 -27.44372 -26.75780 -24.88908 -23.33799 -21.84973 -20.77468 -18.44243 -17.93521 -17.42875 -16.76621 -16.01235 -15.86599 -15.77052 -15.58173 -14.82262 -14.68066 -14.30235 -14.04706 -13.63833 -13.20249 -13.13638 -12.67880 -12.50372 -12.07172 -11.85343 -11.56132 -11.53165 -11.37656 -11.00756 -10.84229 -10.59864 -10.33180 -10.02195 -9.84865 -9.14266 -8.85344 -8.63218 -7.11815 -6.96157 -4.07797 1.48316 2.13147 2.99166 2.99471 3.04700 3.28108 3.32794 3.57701 3.77114 4.36681 4.61280 4.96222 5.12497 5.35591 5.44070 5.49755 5.55633 5.65402 5.76154 5.76588 5.83823 6.09608 6.31784 6.38351 6.58694 6.94336 7.01898 7.14735 7.47308 7.84339 8.30364 8.49188 8.54810 8.94067 9.43353 10.14562 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.008741 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.018390 B = 3202.547607 C = 5333.735773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.363 6.363 3 C 0.515 3.485 4 O -0.530 6.530 5 C -0.319 4.319 6 C 0.039 3.961 7 C -0.119 4.119 8 F -0.149 7.149 9 C 0.384 3.616 10 O -0.308 6.308 11 C 0.041 3.959 12 N -0.565 5.565 13 C 0.369 3.631 14 N -0.459 5.459 15 C -0.287 4.287 16 H 0.120 0.880 17 C 0.025 3.975 18 N -0.845 5.845 19 Si 0.945 3.055 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.262 1.262 23 H 0.058 0.942 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.143 0.857 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.431 0.569 31 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 -5.717 -0.304 6.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.280 6.280 3 C 0.366 3.634 4 O -0.422 6.422 5 C -0.330 4.330 6 C 0.014 3.986 7 C -0.146 4.146 8 F -0.129 7.129 9 C 0.187 3.813 10 O -0.213 6.213 11 C -0.055 4.055 12 N -0.300 5.300 13 C 0.119 3.881 14 N -0.068 5.068 15 C -0.419 4.419 16 H 0.138 0.862 17 C -0.185 4.185 18 N -0.477 5.477 19 Si 0.769 3.231 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.186 1.186 23 H 0.077 0.923 24 H 0.112 0.888 25 H 0.077 0.923 26 H 0.161 0.839 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.282 0.718 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.299 -4.323 -0.193 4.900 hybrid contribution -0.606 0.171 0.023 0.630 sum 1.692 -4.152 -0.169 4.487 Atomic orbital electron populations 1.23109 0.77391 1.02654 1.02346 1.86528 1.22443 1.33415 1.85657 1.20753 0.88501 0.80883 0.73279 1.90562 1.66348 1.35082 1.50181 1.18171 0.88527 0.93080 1.33261 1.21002 0.90434 0.98216 0.88964 1.16606 0.88084 0.81152 1.28732 1.91361 1.74194 1.51513 1.95789 1.19599 0.83773 0.88520 0.89454 1.86205 1.16619 1.31579 1.86918 1.22805 0.97618 0.82273 1.02771 1.66735 1.05815 1.28498 1.28918 1.17110 0.85944 0.85269 0.99751 1.42286 1.11510 1.03418 1.49556 1.20336 0.95175 0.83433 1.42960 0.86200 1.25774 0.95568 1.01246 0.95897 1.69761 1.05186 1.31331 1.41430 0.85615 0.79224 0.79145 0.79080 1.19513 1.20172 1.18552 0.92295 0.88840 0.92270 0.83911 0.92163 0.89360 0.92156 0.71841 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.57 101.05 1.07 1.61 16 2 O -0.36 -6.43 9.89 -40.77 -0.40 -6.83 16 3 C 0.51 10.97 7.87 34.31 0.27 11.24 16 4 O -0.53 -12.69 13.45 -19.31 -0.26 -12.95 16 5 C -0.32 -6.97 5.91 -104.63 -0.62 -7.59 16 6 C 0.04 0.75 9.70 -38.86 -0.38 0.37 16 7 C -0.12 -2.41 7.33 -39.18 -0.29 -2.70 16 8 F -0.15 -2.90 17.11 2.25 0.04 -2.86 16 9 C 0.38 8.07 7.50 -16.91 -0.13 7.94 16 10 O -0.31 -5.82 10.33 -18.27 -0.19 -6.01 16 11 C 0.04 0.62 10.37 101.05 1.05 1.67 16 12 N -0.56 -12.87 7.90 -12.16 -0.10 -12.97 16 13 C 0.37 8.87 7.44 -155.16 -1.15 7.72 16 14 N -0.46 -11.90 5.28 -10.96 -0.06 -11.95 16 15 C -0.29 -7.34 9.69 -15.07 -0.15 -7.48 16 16 H 0.12 2.97 7.09 -52.48 -0.37 2.60 16 17 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 18 N -0.85 -21.99 13.05 55.49 0.72 -21.27 16 19 Si 0.95 18.70 29.55 -169.99 -5.02 13.68 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.14 2.33 7.70 -52.48 -0.40 1.92 16 27 H 0.06 0.95 8.10 -51.93 -0.42 0.52 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 30 H 0.43 11.64 4.38 -40.97 -0.18 11.46 16 31 H 0.29 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 286.01 15.07 4.31 4.31 Total: -1.00 -28.64 286.01 -4.00 -32.64 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -2.62 Total: 10.92 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: -0.42 Total: 13.30 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.57 Total: -46.19 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.85 Total: -25.79 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.64 -4.00 -32.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163177121.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.189 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds