Wall clock time and date at job start Mon Mar 30 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34803 * 117.00165 * 2 1 4 4 O 1.21557 * 120.00322 * 359.97438 * 3 2 1 5 5 C 1.47070 * 120.00039 * 179.97438 * 3 2 1 6 6 C 1.40344 * 120.54720 * 5.65511 * 5 3 2 7 7 C 1.38048 * 118.40953 * 180.02562 * 6 5 3 8 8 F 1.35102 * 120.28159 * 179.97438 * 7 6 5 9 9 C 1.39502 * 119.43674 * 0.02562 * 7 6 5 10 10 O 1.35524 * 119.46236 * 180.02562 * 9 7 6 11 11 C 1.42898 * 117.00326 * 179.97438 * 10 9 7 12 12 N 1.32229 * 121.07965 * 359.71864 * 9 7 6 13 13 C 1.32460 * 121.72838 * 0.56838 * 12 9 7 14 14 N 1.38227 * 119.78127 * 179.71021 * 13 12 9 15 15 C 1.36886 * 119.99947 * 354.21813 * 14 13 12 16 16 H 1.08007 * 119.99804 * 0.02562 * 15 14 13 17 17 C 1.38857 * 120.00277 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99944 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00079 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47285 * 89.99959 * 19 17 15 21 21 H 1.48499 * 109.47030 * 210.00232 * 19 17 15 22 22 H 1.48500 * 109.47256 * 329.99790 * 19 17 15 23 23 H 1.09001 * 109.47076 * 60.00326 * 1 2 3 24 24 H 1.08996 * 109.47450 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47196 * 300.00607 * 1 2 3 26 26 H 1.08003 * 120.79420 * 359.97438 * 6 5 3 27 27 H 1.08997 * 109.47425 * 59.99500 * 11 10 9 28 28 H 1.09000 * 109.47794 * 180.02562 * 11 10 9 29 29 H 1.09007 * 109.47084 * 300.00030 * 11 10 9 30 30 H 0.96993 * 120.00252 * 173.94631 * 14 13 12 31 31 H 0.96999 * 119.99797 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4020 2.2206 -0.0005 5 6 3.5327 1.2780 0.0006 6 6 4.3080 0.1142 -0.1180 7 6 5.6829 0.2375 -0.1118 8 9 6.4657 -0.8581 -0.2232 9 6 6.2573 1.5028 0.0113 10 8 7.6070 1.6245 0.0169 11 6 8.1390 2.9445 0.1452 12 7 5.5063 2.5860 0.1167 13 6 4.1834 2.5187 0.1214 14 7 3.4375 3.6764 0.2396 15 6 4.0621 4.8725 0.4701 16 1 5.1378 4.9116 0.5591 17 6 3.3128 6.0354 0.5895 18 7 2.0030 5.9879 0.4806 19 14 4.1653 7.6677 0.9032 20 1 4.4972 8.3102 -0.3938 21 1 3.2632 8.5561 1.6793 22 1 5.4131 7.4344 1.6738 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.8401 -0.8548 -0.2110 27 1 7.8015 3.3826 1.0845 28 1 9.2280 2.9001 0.1351 29 1 7.7930 3.5581 -0.6867 30 1 2.4718 3.6420 0.1554 31 1 1.4795 6.8002 0.5643 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163177121.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:56 Heat of formation + Delta-G solvation = -140.645185 kcal Electronic energy + Delta-G solvation = -20715.480284 eV Core-core repulsion = 17104.813888 eV Total energy + Delta-G solvation = -3610.666396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.41110 -41.79696 -40.77452 -39.13678 -37.44059 -36.78238 -34.00170 -33.16684 -30.53659 -28.73552 -28.22330 -26.60402 -24.94150 -23.55680 -22.40196 -20.18251 -19.57998 -19.05294 -18.40253 -17.65511 -17.45842 -17.38984 -17.08888 -16.40290 -16.36582 -15.84321 -15.66280 -15.14104 -14.81687 -14.67546 -14.19503 -14.07092 -13.72715 -13.43040 -13.13851 -12.88931 -12.69378 -12.62922 -12.50899 -12.12587 -11.74481 -11.63842 -11.56690 -10.84753 -10.57047 -10.36267 -8.86505 -8.72930 -5.98002 -0.19491 0.44164 1.37710 1.44818 1.53543 1.61221 1.82445 2.07738 2.15845 2.62909 2.87228 3.16131 3.45337 3.76199 3.97985 4.22473 4.38344 4.38749 4.49468 4.51172 4.58032 4.68268 4.81339 4.83871 4.91508 5.19717 5.34247 5.54185 5.69259 6.19101 6.52604 6.75103 6.86524 7.15010 7.58755 8.40876 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.008741 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.018390 B = 3202.547607 C = 5333.735773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.355 6.355 3 C 0.519 3.481 4 O -0.559 6.559 5 C -0.332 4.332 6 C 0.055 3.945 7 C -0.113 4.113 8 F -0.140 7.140 9 C 0.380 3.620 10 O -0.309 6.309 11 C 0.037 3.963 12 N -0.584 5.584 13 C 0.373 3.627 14 N -0.492 5.492 15 C -0.318 4.318 16 H 0.118 0.882 17 C -0.019 4.019 18 N -0.894 5.894 19 Si 1.013 2.987 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.254 1.254 23 H 0.057 0.943 24 H 0.141 0.859 25 H 0.054 0.946 26 H 0.180 0.820 27 H 0.053 0.947 28 H 0.133 0.867 29 H 0.053 0.947 30 H 0.422 0.578 31 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 -7.383 -0.346 8.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.271 6.271 3 C 0.371 3.629 4 O -0.453 6.453 5 C -0.343 4.343 6 C 0.031 3.969 7 C -0.139 4.139 8 F -0.120 7.120 9 C 0.185 3.815 10 O -0.214 6.214 11 C -0.058 4.058 12 N -0.320 5.320 13 C 0.125 3.875 14 N -0.103 5.103 15 C -0.449 4.449 16 H 0.135 0.865 17 C -0.223 4.223 18 N -0.528 5.528 19 Si 0.834 3.166 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.177 1.177 23 H 0.076 0.924 24 H 0.159 0.841 25 H 0.073 0.927 26 H 0.197 0.803 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.072 0.928 30 H 0.271 0.729 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.456 -6.053 -0.238 6.975 hybrid contribution -0.850 0.286 -0.010 0.897 sum 2.607 -5.767 -0.248 6.334 Atomic orbital electron populations 1.23529 0.74840 1.05712 1.02162 1.86501 1.24787 1.31010 1.84771 1.20721 0.88402 0.81444 0.72342 1.90568 1.66984 1.36446 1.51296 1.18432 0.89518 0.93160 1.33204 1.21290 0.89876 0.98828 0.86945 1.16747 0.88552 0.81146 1.27444 1.91392 1.74007 1.50916 1.95650 1.19924 0.84705 0.88561 0.88269 1.86224 1.15218 1.33575 1.86385 1.23092 0.99981 0.80616 1.02100 1.66763 1.05520 1.29538 1.30209 1.17646 0.86672 0.85804 0.97411 1.42327 1.11154 1.04068 1.52785 1.20479 0.95190 0.84132 1.45083 0.86461 1.26705 0.96046 1.04306 0.95277 1.69858 1.06614 1.32168 1.44203 0.84630 0.78265 0.74683 0.79064 1.18956 1.19747 1.17723 0.92422 0.84100 0.92670 0.80258 0.92839 0.84946 0.92832 0.72866 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.57 113.37 1.20 1.97 16 2 O -0.35 -11.72 9.89 -57.14 -0.57 -12.29 16 3 C 0.52 21.84 7.87 70.14 0.55 22.39 16 4 O -0.56 -27.29 13.45 19.65 0.26 -27.03 16 5 C -0.33 -14.23 5.91 -19.87 -0.12 -14.35 16 6 C 0.06 1.98 9.70 22.74 0.22 2.20 16 7 C -0.11 -4.26 7.33 22.53 0.17 -4.10 16 8 F -0.14 -5.00 17.11 44.97 0.77 -4.23 16 9 C 0.38 15.45 7.50 84.94 0.64 16.09 16 10 O -0.31 -11.06 10.33 -88.28 -0.91 -11.97 16 11 C 0.04 1.05 10.37 113.37 1.18 2.23 16 12 N -0.58 -26.59 7.90 -305.36 -2.41 -29.01 16 13 C 0.37 18.16 7.44 133.67 0.99 19.15 16 14 N -0.49 -26.49 5.28 -188.57 -1.00 -27.49 16 15 C -0.32 -16.91 9.69 84.05 0.81 -16.10 16 16 H 0.12 6.03 7.09 -2.91 -0.02 6.01 16 17 C -0.02 -0.98 5.50 84.89 0.47 -0.52 16 18 N -0.89 -48.69 13.05 21.65 0.28 -48.40 16 19 Si 1.01 39.23 29.55 68.60 2.03 41.25 16 20 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 21 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.18 5.08 7.70 -2.91 -0.02 5.06 16 27 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 28 H 0.13 2.62 8.14 -2.39 -0.02 2.61 16 29 H 0.05 1.62 8.10 -2.38 -0.02 1.60 16 30 H 0.42 23.87 4.38 -95.00 -0.42 23.45 16 31 H 0.29 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -63.80 286.01 5.34 -58.46 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.77 Total: 31.72 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 6.11 Total: 28.97 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -3.13 Total: -104.89 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -1.21 Total: -51.29 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.77 Total: -4.23 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.25 kcal Total: -63.80 5.34 -58.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163177121.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.184 kcal (2) G-P(sol) polarization free energy of solvation -63.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds