Wall clock time and date at job start Mon Mar 30 2020 00:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99858 * 2 1 4 4 H 1.48505 * 109.46943 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47256 * 299.99851 * 3 2 1 6 6 H 1.48500 * 109.46916 * 60.00083 * 3 2 1 7 7 C 1.38760 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00078 * 179.97438 * 7 2 1 9 9 N 1.36839 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.39458 * 120.00129 * 179.97438 * 9 7 2 11 11 C 1.38484 * 119.90336 * 359.97438 * 10 9 7 12 12 C 1.39524 * 119.57094 * 179.97438 * 11 10 9 13 13 C 1.46525 * 133.92093 * 179.97438 * 12 11 10 14 14 C 1.34239 * 107.00854 * 180.02562 * 13 12 11 15 15 N 1.36812 * 109.95109 * 0.23030 * 14 13 12 16 16 H 0.97000 * 125.05793 * 179.75098 * 15 14 13 17 17 C 1.37835 * 109.87710 * 359.61281 * 15 14 13 18 18 C 1.39158 * 133.31403 * 180.02562 * 17 15 14 19 19 C 1.37587 * 120.04671 * 180.32421 * 18 17 15 20 20 C 1.50700 * 119.70406 * 180.02562 * 19 18 17 21 21 F 1.39905 * 109.47249 * 0.02562 * 20 19 18 22 22 F 1.39895 * 109.47287 * 120.02017 * 20 19 18 23 23 F 1.39903 * 109.46828 * 240.01690 * 20 19 18 24 24 H 0.97003 * 120.00421 * 0.02562 * 1 2 3 25 25 H 0.97007 * 120.00055 * 359.97438 * 9 7 2 26 26 H 1.08006 * 120.21560 * 359.95599 * 11 10 9 27 27 H 1.08001 * 126.49787 * 359.97438 * 13 12 11 28 28 H 1.08002 * 125.02090 * 179.97438 * 14 13 12 29 29 H 1.08004 * 119.97284 * 0.31742 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0100 -1.2017 0.0005 8 1 3.0899 -1.2017 0.0001 9 7 1.3258 -2.3868 0.0005 10 6 2.0231 -3.5945 0.0005 11 6 3.4079 -3.5922 0.0000 12 6 4.0985 -4.8045 0.0005 13 6 5.5187 -5.1653 -0.0002 14 6 5.5832 -6.5061 0.0003 15 7 4.3211 -7.0342 -0.0037 16 1 4.1136 -7.9818 -0.0076 17 6 3.3884 -6.0194 0.0016 18 6 1.9969 -6.0016 0.0011 19 6 1.3233 -4.8020 0.0009 20 6 -0.1837 -4.7918 0.0010 21 9 -0.6590 -6.1076 0.0019 22 9 -0.6455 -4.1285 1.1429 23 9 -0.6456 -4.1297 -1.1416 24 1 -0.4851 0.8400 -0.0004 25 1 0.3557 -2.3868 0.0005 26 1 3.9499 -2.6579 -0.0011 27 1 6.3550 -4.4820 -0.0019 28 1 6.4964 -7.0827 -0.0004 29 1 1.4455 -6.9303 0.0008 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183767.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:02 Heat of formation + Delta-G solvation = -90.669734 kcal Electronic energy + Delta-G solvation = -20522.684650 eV Core-core repulsion = 16803.097836 eV Total energy + Delta-G solvation = -3719.586814 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.47876 -47.04056 -46.86394 -40.44557 -37.36266 -34.37648 -31.73831 -31.22940 -29.08203 -27.40012 -24.95621 -24.60958 -21.64545 -20.64432 -20.02987 -18.61047 -17.74931 -17.60701 -17.22961 -16.64920 -16.10255 -14.71606 -14.18344 -13.93586 -13.93106 -13.71646 -13.71357 -13.38446 -13.28238 -13.08677 -13.05978 -12.87771 -12.53277 -12.05384 -11.89633 -11.51772 -11.24411 -11.14422 -10.70376 -10.35514 -9.95705 -9.85898 -9.10437 -8.55828 -7.46942 -6.57421 -6.50366 -3.76195 1.58818 2.50955 3.15920 3.17735 3.21823 3.22106 3.38774 3.72190 4.03411 4.46297 4.58321 4.79976 5.05452 5.05966 5.29046 5.31339 5.45288 5.88933 5.94534 6.13851 6.34823 6.60239 6.65236 6.83006 7.18037 7.26599 7.30751 7.50969 7.65738 7.89877 8.09938 8.71793 9.26349 9.46335 10.58580 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.008011 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.935508 B = 3494.417818 C = 5044.864396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.021 3.979 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.553 5.553 10 C 0.222 3.778 11 C -0.197 4.197 12 C -0.015 4.015 13 C -0.236 4.236 14 C 0.063 3.937 15 N -0.607 5.607 16 H 0.405 0.595 17 C -0.013 4.013 18 C -0.026 4.026 19 C -0.272 4.272 20 C 0.514 3.486 21 F -0.191 7.191 22 F -0.181 7.181 23 F -0.181 7.181 24 H 0.276 0.724 25 H 0.400 0.600 26 H 0.126 0.874 27 H 0.137 0.863 28 H 0.160 0.840 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.521 -10.490 -0.005 11.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.183 4.183 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.155 5.155 10 C 0.098 3.902 11 C -0.224 4.224 12 C -0.020 4.020 13 C -0.264 4.264 14 C -0.064 4.064 15 N -0.213 5.213 16 H 0.240 0.760 17 C -0.117 4.117 18 C -0.048 4.048 19 C -0.280 4.280 20 C 0.460 3.540 21 F -0.172 7.172 22 F -0.162 7.162 23 F -0.162 7.162 24 H 0.086 0.914 25 H 0.237 0.763 26 H 0.143 0.857 27 H 0.155 0.845 28 H 0.177 0.823 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.259 -10.077 -0.008 11.367 hybrid contribution -0.450 0.375 -0.001 0.585 sum 4.809 -9.702 -0.008 10.828 Atomic orbital electron populations 1.69727 1.06057 1.28596 1.47790 1.25354 0.95746 1.00045 0.97143 0.85727 0.79460 0.80766 0.77990 1.19018 1.20526 1.20517 1.19800 0.93221 0.82437 1.47661 0.87556 1.41167 1.08353 1.01962 1.63996 1.17039 0.91461 0.84446 0.97225 1.19587 0.90960 0.96240 1.15600 1.18986 0.92484 0.91961 0.98566 1.21574 0.94887 0.94033 1.15870 1.21633 0.87329 0.94451 1.03001 1.41416 1.04377 1.07122 1.68365 0.75964 1.17525 0.89969 0.87876 1.16290 1.19150 0.90510 0.95958 0.99133 1.18665 0.88698 0.94502 1.26175 1.18302 0.89429 0.72634 0.73648 1.93070 1.90404 1.37375 1.96387 1.93200 1.90724 1.80899 1.51393 1.93202 1.90725 1.80952 1.51339 0.91425 0.76324 0.85658 0.84493 0.82297 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.24 13.05 55.49 0.72 -23.51 15 2 C 0.02 0.55 5.50 -17.45 -0.10 0.45 15 3 Si 0.93 19.96 29.55 -169.99 -5.02 14.93 15 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.30 -7.86 9.55 -15.12 -0.14 -8.00 15 8 H 0.11 2.63 5.67 -52.49 -0.30 2.33 15 9 N -0.55 -14.15 5.18 -9.60 -0.05 -14.20 15 10 C 0.22 5.16 6.51 -83.81 -0.55 4.61 15 11 C -0.20 -4.32 9.35 -39.01 -0.36 -4.68 15 12 C -0.01 -0.29 6.37 -105.14 -0.67 -0.96 15 13 C -0.24 -3.73 11.08 -37.65 -0.42 -4.14 15 14 C 0.06 0.81 11.81 -16.74 -0.20 0.62 15 15 N -0.61 -8.31 6.07 -10.60 -0.06 -8.38 15 16 H 0.41 4.11 8.96 -40.82 -0.37 3.74 15 17 C -0.01 -0.23 7.27 -83.89 -0.61 -0.84 15 18 C -0.03 -0.48 9.43 -39.48 -0.37 -0.86 15 19 C -0.27 -5.72 5.39 -104.37 -0.56 -6.28 15 20 C 0.51 10.52 2.80 36.01 0.10 10.62 15 21 F -0.19 -3.45 15.93 2.25 0.04 -3.42 15 22 F -0.18 -3.91 16.22 2.25 0.04 -3.87 15 23 F -0.18 -3.91 16.22 2.25 0.04 -3.87 15 24 H 0.28 7.07 8.31 -40.82 -0.34 6.73 15 25 H 0.40 10.64 5.26 -40.82 -0.21 10.42 15 26 H 0.13 2.74 5.94 -52.48 -0.31 2.42 15 27 H 0.14 1.90 8.06 -52.49 -0.42 1.47 15 28 H 0.16 1.33 8.06 -52.49 -0.42 0.91 15 29 H 0.12 1.84 7.11 -52.48 -0.37 1.46 15 LS Contribution 265.99 15.07 4.01 4.01 Total: -1.00 -28.74 265.99 -5.72 -34.46 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -1.54 Total: 13.31 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -3.88 Total: -9.46 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.61 Total: -46.09 kcal Atomic # 9 Polarization: -11.27 SS G_CDS: 0.11 Total: -11.16 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.74 -5.72 -34.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183767.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.214 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds