Wall clock time and date at job start Mon Mar 30 2020 00:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99858 * 2 1 4 4 H 1.48505 * 109.46943 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47256 * 299.99851 * 3 2 1 6 6 H 1.48500 * 109.46916 * 60.00083 * 3 2 1 7 7 C 1.38760 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00078 * 179.97438 * 7 2 1 9 9 N 1.36839 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.39458 * 120.00129 * 179.97438 * 9 7 2 11 11 C 1.38484 * 119.90336 * 359.97438 * 10 9 7 12 12 C 1.39524 * 119.57094 * 179.97438 * 11 10 9 13 13 C 1.46525 * 133.92093 * 179.97438 * 12 11 10 14 14 C 1.34239 * 107.00854 * 180.02562 * 13 12 11 15 15 N 1.36812 * 109.95109 * 0.23030 * 14 13 12 16 16 H 0.97000 * 125.05793 * 179.75098 * 15 14 13 17 17 C 1.37835 * 109.87710 * 359.61281 * 15 14 13 18 18 C 1.39158 * 133.31403 * 180.02562 * 17 15 14 19 19 C 1.37587 * 120.04671 * 180.32421 * 18 17 15 20 20 C 1.50700 * 119.70406 * 180.02562 * 19 18 17 21 21 F 1.39905 * 109.47249 * 0.02562 * 20 19 18 22 22 F 1.39895 * 109.47287 * 120.02017 * 20 19 18 23 23 F 1.39903 * 109.46828 * 240.01690 * 20 19 18 24 24 H 0.97003 * 120.00421 * 0.02562 * 1 2 3 25 25 H 0.97007 * 120.00055 * 359.97438 * 9 7 2 26 26 H 1.08006 * 120.21560 * 359.95599 * 11 10 9 27 27 H 1.08001 * 126.49787 * 359.97438 * 13 12 11 28 28 H 1.08002 * 125.02090 * 179.97438 * 14 13 12 29 29 H 1.08004 * 119.97284 * 0.31742 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0100 -1.2017 0.0005 8 1 3.0899 -1.2017 0.0001 9 7 1.3258 -2.3868 0.0005 10 6 2.0231 -3.5945 0.0005 11 6 3.4079 -3.5922 0.0000 12 6 4.0985 -4.8045 0.0005 13 6 5.5187 -5.1653 -0.0002 14 6 5.5832 -6.5061 0.0003 15 7 4.3211 -7.0342 -0.0037 16 1 4.1136 -7.9818 -0.0076 17 6 3.3884 -6.0194 0.0016 18 6 1.9969 -6.0016 0.0011 19 6 1.3233 -4.8020 0.0009 20 6 -0.1837 -4.7918 0.0010 21 9 -0.6590 -6.1076 0.0019 22 9 -0.6455 -4.1285 1.1429 23 9 -0.6456 -4.1297 -1.1416 24 1 -0.4851 0.8400 -0.0004 25 1 0.3557 -2.3868 0.0005 26 1 3.9499 -2.6579 -0.0011 27 1 6.3550 -4.4820 -0.0019 28 1 6.4964 -7.0827 -0.0004 29 1 1.4455 -6.9303 0.0008 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183767.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:02 Heat of formation + Delta-G solvation = -107.996966 kcal Electronic energy + Delta-G solvation = -20523.436015 eV Core-core repulsion = 16803.097836 eV Total energy + Delta-G solvation = -3720.338179 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.12469 -48.63913 -48.56720 -41.83925 -38.97844 -36.06344 -33.48968 -32.72349 -30.50879 -29.00052 -26.71538 -26.18507 -23.27528 -22.17894 -21.31909 -20.23708 -19.41639 -19.23738 -18.92132 -18.06640 -17.68942 -16.48954 -15.86318 -15.55088 -15.54456 -15.23988 -15.14938 -15.02498 -14.88982 -14.76095 -14.53188 -14.44599 -13.91579 -13.74752 -13.45094 -13.04860 -12.86607 -12.81746 -12.43052 -12.03589 -11.59690 -11.52555 -10.64764 -10.24638 -8.86709 -8.44778 -8.12616 -5.70977 0.09713 0.89753 1.42313 1.49405 1.56968 1.77793 1.97283 2.28921 2.46071 2.81825 2.96944 3.20696 3.22312 3.39677 3.59609 3.96940 4.22230 4.54466 4.55371 4.75357 4.84934 5.13549 5.21675 5.26051 5.46367 5.57440 5.75242 5.94514 6.04100 6.37486 6.81902 7.00603 7.46173 7.59647 8.74196 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.008011 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.935508 B = 3494.417818 C = 5044.864396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.034 4.034 3 Si 1.002 2.998 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.316 4.316 8 H 0.108 0.892 9 N -0.588 5.588 10 C 0.208 3.792 11 C -0.221 4.221 12 C -0.034 4.034 13 C -0.271 4.271 14 C 0.106 3.894 15 N -0.588 5.588 16 H 0.429 0.571 17 C -0.009 4.009 18 C -0.017 4.017 19 C -0.288 4.288 20 C 0.517 3.483 21 F -0.173 7.173 22 F -0.191 7.191 23 F -0.191 7.191 24 H 0.274 0.726 25 H 0.389 0.611 26 H 0.113 0.887 27 H 0.152 0.848 28 H 0.220 0.780 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.271 -13.653 -0.007 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.232 4.232 3 Si 0.825 3.175 4 H -0.179 1.179 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.446 4.446 8 H 0.126 0.874 9 N -0.194 5.194 10 C 0.089 3.911 11 C -0.247 4.247 12 C -0.039 4.039 13 C -0.297 4.297 14 C -0.023 4.023 15 N -0.195 5.195 16 H 0.268 0.732 17 C -0.114 4.114 18 C -0.038 4.038 19 C -0.296 4.296 20 C 0.463 3.537 21 F -0.155 7.155 22 F -0.172 7.172 23 F -0.172 7.172 24 H 0.083 0.917 25 H 0.224 0.776 26 H 0.131 0.869 27 H 0.169 0.831 28 H 0.236 0.764 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.066 -13.345 -0.009 15.593 hybrid contribution -1.065 0.862 0.000 1.370 sum 7.001 -12.484 -0.009 14.313 Atomic orbital electron populations 1.69849 1.07538 1.29011 1.50979 1.26241 0.96528 1.03130 0.97315 0.84719 0.78597 0.76479 0.77696 1.17865 1.20431 1.20421 1.20065 0.93452 0.83313 1.47751 0.87413 1.41109 1.07663 1.02495 1.68153 1.17493 0.92254 0.84701 0.96642 1.19661 0.90712 0.97190 1.17155 1.19434 0.95026 0.91599 0.97885 1.21883 0.93379 0.96021 1.18413 1.22492 0.88395 0.93712 0.97690 1.41532 1.03896 1.07729 1.66390 0.73186 1.17670 0.90279 0.88837 1.14631 1.19468 0.91139 0.96111 0.97053 1.18866 0.89001 0.94833 1.26871 1.18245 0.89392 0.73043 0.73030 1.93093 1.90223 1.35882 1.96279 1.93177 1.90835 1.81300 1.51923 1.93179 1.90836 1.81352 1.51868 0.91686 0.77644 0.86934 0.83065 0.76384 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.22 13.05 21.64 0.28 -53.94 15 2 C -0.03 -1.85 5.50 84.85 0.47 -1.39 15 3 Si 1.00 42.73 29.55 68.60 2.03 44.75 15 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 6 H -0.28 -11.66 7.11 99.48 0.71 -10.96 15 7 C -0.32 -17.43 9.55 84.04 0.80 -16.63 15 8 H 0.11 5.65 5.67 -2.91 -0.02 5.63 15 9 N -0.59 -31.88 5.18 -184.29 -0.95 -32.83 15 10 C 0.21 9.98 6.51 38.31 0.25 10.23 15 11 C -0.22 -9.86 9.35 22.64 0.21 -9.65 15 12 C -0.03 -1.26 6.37 -20.20 -0.13 -1.39 15 13 C -0.27 -7.53 11.08 23.52 0.26 -7.27 15 14 C 0.11 2.03 11.81 83.00 0.98 3.02 15 15 N -0.59 -12.68 6.07 -187.45 -1.14 -13.82 15 16 H 0.43 5.81 8.96 -92.71 -0.83 4.98 15 17 C -0.01 -0.29 7.27 39.03 0.28 0.00 15 18 C -0.02 -0.58 9.43 22.34 0.21 -0.37 15 19 C -0.29 -12.09 5.39 -19.70 -0.11 -12.20 15 20 C 0.52 21.38 2.80 71.24 0.20 21.58 15 21 F -0.17 -6.03 15.93 44.97 0.72 -5.31 15 22 F -0.19 -8.54 16.22 44.97 0.73 -7.81 15 23 F -0.19 -8.54 16.22 44.97 0.73 -7.81 15 24 H 0.27 14.90 8.31 -92.71 -0.77 14.13 15 25 H 0.39 22.08 5.26 -92.70 -0.49 21.60 15 26 H 0.11 5.17 5.94 -2.91 -0.02 5.16 15 27 H 0.15 3.71 8.06 -2.91 -0.02 3.68 15 28 H 0.22 1.74 8.06 -2.91 -0.02 1.71 15 29 H 0.15 4.09 7.11 -2.91 -0.02 4.07 15 Total: -1.00 -67.05 265.99 5.75 -61.30 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.07 Total: 29.55 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 3.43 Total: -14.08 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -1.81 Total: -100.59 kcal Atomic # 9 Polarization: -23.10 SS G_CDS: 2.18 Total: -20.93 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -67.05 5.75 -61.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183767.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.695 kcal (2) G-P(sol) polarization free energy of solvation -67.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds