Wall clock time and date at job start Mon Mar 30 2020 00:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00315 * 2 1 4 4 H 1.48500 * 109.47041 * 270.00343 * 3 2 1 5 5 H 1.48506 * 109.46890 * 29.99896 * 3 2 1 6 6 H 1.48495 * 109.47289 * 149.99826 * 3 2 1 7 7 C 1.38732 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00125 * 0.02562 * 7 2 1 9 9 N 1.36828 * 120.00021 * 179.97438 * 7 2 1 10 10 C 1.38962 * 120.00012 * 180.02562 * 9 7 2 11 11 C 1.38657 * 120.26693 * 359.97438 * 10 9 7 12 12 C 1.38552 * 120.27055 * 179.97438 * 11 10 9 13 13 C 1.50698 * 119.61223 * 180.02562 * 12 11 10 14 14 F 1.39899 * 109.47120 * 179.97438 * 13 12 11 15 15 F 1.39897 * 109.47161 * 299.97460 * 13 12 11 16 16 F 1.39908 * 109.47185 * 59.97714 * 13 12 11 17 17 C 1.37905 * 120.77244 * 0.02562 * 12 11 10 18 18 C 1.39176 * 120.11594 * 0.26073 * 17 12 11 19 19 N 1.37710 * 133.35396 * 180.39244 * 18 17 12 20 20 H 0.96998 * 125.07387 * 359.33409 * 19 18 17 21 21 C 1.36859 * 109.85728 * 179.54155 * 19 18 17 22 22 C 1.34335 * 109.87244 * 359.76074 * 21 19 18 23 23 C 1.40389 * 120.26522 * 179.97438 * 10 9 7 24 24 H 0.97002 * 119.99860 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99899 * 0.02562 * 9 7 2 26 26 H 1.07999 * 119.86125 * 359.97438 * 11 10 9 27 27 H 1.08002 * 119.93857 * 179.97438 * 17 12 11 28 28 H 1.08000 * 125.06231 * 179.73229 * 21 19 18 29 29 H 1.07998 * 126.50458 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0099 -1.2015 0.0005 8 1 1.4699 -2.1368 0.0005 9 7 3.3782 -1.2016 0.0000 10 6 4.0729 -2.4050 0.0000 11 6 3.3852 -3.6090 0.0011 12 6 4.0778 -4.8090 0.0005 13 6 3.3154 -6.1089 0.0011 14 9 4.2172 -7.1784 -0.0002 15 9 2.5119 -6.1777 1.1443 16 9 2.5093 -6.1772 -1.1403 17 6 5.4568 -4.8277 -0.0005 18 6 6.1714 -3.6335 0.0044 19 7 7.5160 -3.3363 -0.0021 20 1 8.2316 -3.9912 -0.0028 21 6 7.6922 -1.9791 -0.0026 22 6 6.4982 -1.3636 -0.0019 23 6 5.4768 -2.4116 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 3.8632 -0.3615 -0.0004 26 1 2.3052 -3.6114 0.0023 27 1 5.9830 -5.7709 -0.0005 28 1 8.6487 -1.4777 -0.0030 29 1 6.3248 -0.2977 -0.0017 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186566.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:05 Heat of formation + Delta-G solvation = -88.463879 kcal Electronic energy + Delta-G solvation = -20204.348659 eV Core-core repulsion = 16484.857499 eV Total energy + Delta-G solvation = -3719.491160 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.61273 -47.15416 -47.04981 -40.58184 -37.24574 -35.00057 -32.43204 -30.44975 -29.28094 -27.90478 -25.18475 -24.42577 -21.36944 -21.11819 -20.02294 -18.79038 -17.92336 -17.78659 -17.69514 -16.68453 -15.41426 -15.18779 -14.57876 -14.05979 -13.99513 -13.87588 -13.81491 -13.53646 -13.35434 -13.25307 -13.18435 -13.04616 -12.62497 -12.23148 -12.17615 -11.60485 -11.23338 -11.14892 -10.66877 -10.55608 -10.30128 -10.02169 -9.18198 -8.36647 -7.76558 -6.62537 -6.58984 -3.87409 1.69272 2.36126 2.94513 2.97075 3.02367 3.14771 3.21337 3.62009 3.88830 4.34308 4.38754 4.58894 4.81324 4.94880 5.14049 5.26081 5.69585 5.74742 5.96044 6.09529 6.21820 6.48149 6.57969 6.97140 7.05626 7.20778 7.29056 7.43002 7.61687 7.88170 8.02519 8.41527 9.07319 9.10318 10.47549 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.007714 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.998859 B = 3628.702142 C = 5229.196639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.043 3.957 3 Si 0.882 3.118 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.304 4.304 8 H 0.124 0.876 9 N -0.563 5.563 10 C 0.251 3.749 11 C -0.218 4.218 12 C -0.084 4.084 13 C 0.509 3.491 14 F -0.187 7.187 15 F -0.180 7.180 16 F -0.180 7.180 17 C -0.227 4.227 18 C 0.153 3.847 19 N -0.597 5.597 20 H 0.409 0.591 21 C 0.008 3.992 22 C -0.183 4.183 23 C -0.183 4.183 24 H 0.279 0.721 25 H 0.382 0.618 26 H 0.130 0.870 27 H 0.113 0.887 28 H 0.160 0.840 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.725 -4.996 -0.013 12.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.163 4.163 3 Si 0.708 3.292 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.433 4.433 8 H 0.141 0.859 9 N -0.163 5.163 10 C 0.128 3.872 11 C -0.244 4.244 12 C -0.088 4.088 13 C 0.455 3.545 14 F -0.168 7.168 15 F -0.162 7.162 16 F -0.162 7.162 17 C -0.253 4.253 18 C 0.044 3.956 19 N -0.200 5.200 20 H 0.244 0.756 21 C -0.118 4.118 22 C -0.209 4.209 23 C -0.192 4.192 24 H 0.090 0.910 25 H 0.217 0.783 26 H 0.148 0.852 27 H 0.131 0.869 28 H 0.177 0.823 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.237 -4.748 -0.016 12.198 hybrid contribution 0.672 0.764 0.022 1.018 sum 11.908 -3.984 0.006 12.557 Atomic orbital electron populations 1.69707 1.05652 1.28373 1.46084 1.25065 0.95649 0.98570 0.97053 0.86580 0.79986 0.83292 0.79380 1.19146 1.19723 1.19055 1.19570 0.79337 0.96979 1.47433 0.85887 1.41190 1.06310 1.04150 1.64676 1.16775 0.87774 0.86364 0.96279 1.19743 0.99578 0.88929 1.16136 1.18969 0.93152 0.90524 1.06139 1.18490 0.77409 0.85132 0.73503 1.93099 1.67781 1.59647 1.96295 1.93185 1.74981 1.96792 1.51219 1.93189 1.74840 1.96795 1.51356 1.18782 0.91419 0.94875 1.20242 1.17524 0.82585 0.94163 1.01283 1.41612 1.05539 1.06642 1.66213 0.75572 1.21424 0.98859 0.82372 1.09145 1.21452 0.91114 0.97625 1.10742 1.18555 0.91283 0.93037 1.16301 0.91012 0.78341 0.85242 0.86906 0.82296 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.41 13.97 55.49 0.78 -22.63 15 2 C 0.04 1.09 5.50 -17.46 -0.10 0.99 15 3 Si 0.88 18.59 27.73 -169.99 -4.71 13.88 15 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 6 H -0.27 -5.25 6.52 56.52 0.37 -4.88 15 7 C -0.30 -7.79 10.03 -15.14 -0.15 -7.94 15 8 H 0.12 3.36 5.91 -52.49 -0.31 3.05 15 9 N -0.56 -12.87 5.23 -9.48 -0.05 -12.92 15 10 C 0.25 5.52 6.65 -83.67 -0.56 4.96 15 11 C -0.22 -4.73 8.82 -39.31 -0.35 -5.08 15 12 C -0.08 -1.64 5.37 -104.63 -0.56 -2.20 15 13 C 0.51 9.16 3.31 36.00 0.12 9.28 15 14 F -0.19 -3.08 15.93 2.25 0.04 -3.04 15 15 F -0.18 -3.32 17.23 2.25 0.04 -3.28 15 16 F -0.18 -3.32 17.23 2.25 0.04 -3.28 15 17 C -0.23 -4.09 9.44 -39.35 -0.37 -4.46 15 18 C 0.15 2.74 7.27 -84.01 -0.61 2.13 15 19 N -0.60 -8.27 6.07 -10.63 -0.06 -8.34 15 20 H 0.41 4.17 8.96 -40.82 -0.37 3.80 15 21 C 0.01 0.10 11.82 -16.69 -0.20 -0.09 15 22 C -0.18 -3.04 10.86 -37.71 -0.41 -3.45 15 23 C -0.18 -3.61 6.27 -104.96 -0.66 -4.27 15 24 H 0.28 7.02 8.31 -40.82 -0.34 6.68 15 25 H 0.38 8.14 5.57 -40.82 -0.23 7.91 15 26 H 0.13 2.96 5.95 -52.49 -0.31 2.65 15 27 H 0.11 1.79 7.11 -52.49 -0.37 1.41 15 28 H 0.16 1.48 8.06 -52.49 -0.42 1.06 15 29 H 0.13 2.00 8.06 -52.49 -0.42 1.58 15 LS Contribution 267.39 15.07 4.03 4.03 Total: -1.00 -27.58 267.39 -5.35 -32.93 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -1.60 Total: 12.79 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -3.84 Total: -10.14 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.66 Total: -43.89 kcal Atomic # 9 Polarization: -9.72 SS G_CDS: 0.11 Total: -9.60 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.71 Total: 13.88 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.58 -5.35 -32.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186566.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.529 kcal (2) G-P(sol) polarization free energy of solvation -27.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds