Wall clock time and date at job start Mon Mar 30 2020 00:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00315 * 2 1 4 4 H 1.48500 * 109.47041 * 270.00343 * 3 2 1 5 5 H 1.48506 * 109.46890 * 29.99896 * 3 2 1 6 6 H 1.48495 * 109.47289 * 149.99826 * 3 2 1 7 7 C 1.38732 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00125 * 0.02562 * 7 2 1 9 9 N 1.36828 * 120.00021 * 179.97438 * 7 2 1 10 10 C 1.38962 * 120.00012 * 180.02562 * 9 7 2 11 11 C 1.38657 * 120.26693 * 359.97438 * 10 9 7 12 12 C 1.38552 * 120.27055 * 179.97438 * 11 10 9 13 13 C 1.50698 * 119.61223 * 180.02562 * 12 11 10 14 14 F 1.39899 * 109.47120 * 179.97438 * 13 12 11 15 15 F 1.39897 * 109.47161 * 299.97460 * 13 12 11 16 16 F 1.39908 * 109.47185 * 59.97714 * 13 12 11 17 17 C 1.37905 * 120.77244 * 0.02562 * 12 11 10 18 18 C 1.39176 * 120.11594 * 0.26073 * 17 12 11 19 19 N 1.37710 * 133.35396 * 180.39244 * 18 17 12 20 20 H 0.96998 * 125.07387 * 359.33409 * 19 18 17 21 21 C 1.36859 * 109.85728 * 179.54155 * 19 18 17 22 22 C 1.34335 * 109.87244 * 359.76074 * 21 19 18 23 23 C 1.40389 * 120.26522 * 179.97438 * 10 9 7 24 24 H 0.97002 * 119.99860 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99899 * 0.02562 * 9 7 2 26 26 H 1.07999 * 119.86125 * 359.97438 * 11 10 9 27 27 H 1.08002 * 119.93857 * 179.97438 * 17 12 11 28 28 H 1.08000 * 125.06231 * 179.73229 * 21 19 18 29 29 H 1.07998 * 126.50458 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0099 -1.2015 0.0005 8 1 1.4699 -2.1368 0.0005 9 7 3.3782 -1.2016 0.0000 10 6 4.0729 -2.4050 0.0000 11 6 3.3852 -3.6090 0.0011 12 6 4.0778 -4.8090 0.0005 13 6 3.3154 -6.1089 0.0011 14 9 4.2172 -7.1784 -0.0002 15 9 2.5119 -6.1777 1.1443 16 9 2.5093 -6.1772 -1.1403 17 6 5.4568 -4.8277 -0.0005 18 6 6.1714 -3.6335 0.0044 19 7 7.5160 -3.3363 -0.0021 20 1 8.2316 -3.9912 -0.0028 21 6 7.6922 -1.9791 -0.0026 22 6 6.4982 -1.3636 -0.0019 23 6 5.4768 -2.4116 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 3.8632 -0.3615 -0.0004 26 1 2.3052 -3.6114 0.0023 27 1 5.9830 -5.7709 -0.0005 28 1 8.6487 -1.4777 -0.0030 29 1 6.3248 -0.2977 -0.0017 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186566.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:05 Heat of formation + Delta-G solvation = -105.253527 kcal Electronic energy + Delta-G solvation = -20205.076713 eV Core-core repulsion = 16484.857499 eV Total energy + Delta-G solvation = -3720.219214 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.09098 -48.59871 -48.55912 -41.98036 -38.80193 -36.61429 -34.20223 -31.90139 -30.70820 -29.47460 -26.81735 -26.01955 -22.92603 -22.63258 -21.31806 -20.42107 -19.41357 -19.31112 -19.25397 -18.03813 -17.01090 -16.85371 -16.16867 -15.52284 -15.48732 -15.39461 -15.28410 -15.00780 -14.81115 -14.73610 -14.72102 -14.53289 -13.99628 -13.85053 -13.78394 -13.03712 -12.84382 -12.76929 -12.21138 -12.09132 -11.86637 -11.83945 -10.90367 -9.84367 -9.20185 -8.46833 -8.15501 -5.80213 0.21681 0.76049 1.27081 1.34126 1.37600 1.73281 1.89758 2.17348 2.36728 2.71689 2.88572 3.04834 3.18027 3.29510 3.57959 4.08921 4.28123 4.38881 4.53227 4.66482 4.83145 5.04128 5.11376 5.39892 5.43926 5.61043 5.75557 5.87958 5.93649 6.27666 6.61430 6.91619 7.28372 7.38663 8.68226 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.007714 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.998859 B = 3628.702142 C = 5229.196639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.015 4.015 3 Si 0.952 3.048 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.243 1.243 7 C -0.313 4.313 8 H 0.083 0.917 9 N -0.586 5.586 10 C 0.240 3.760 11 C -0.245 4.245 12 C -0.105 4.105 13 C 0.515 3.485 14 F -0.172 7.172 15 F -0.185 7.185 16 F -0.185 7.185 17 C -0.187 4.187 18 C 0.132 3.868 19 N -0.576 5.576 20 H 0.432 0.568 21 C 0.060 3.940 22 C -0.226 4.226 23 C -0.192 4.192 24 H 0.279 0.721 25 H 0.388 0.612 26 H 0.100 0.900 27 H 0.145 0.855 28 H 0.217 0.783 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.012 -5.299 0.014 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.214 4.214 3 Si 0.774 3.226 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.167 1.167 7 C -0.442 4.442 8 H 0.101 0.899 9 N -0.194 5.194 10 C 0.122 3.878 11 C -0.272 4.272 12 C -0.108 4.108 13 C 0.461 3.539 14 F -0.153 7.153 15 F -0.166 7.166 16 F -0.166 7.166 17 C -0.211 4.211 18 C 0.022 3.978 19 N -0.180 5.180 20 H 0.273 0.727 21 C -0.067 4.067 22 C -0.250 4.250 23 C -0.201 4.201 24 H 0.089 0.911 25 H 0.224 0.776 26 H 0.118 0.882 27 H 0.163 0.837 28 H 0.234 0.766 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.624 -5.150 0.012 17.404 hybrid contribution -0.511 0.474 0.008 0.697 sum 16.114 -4.676 0.021 16.778 Atomic orbital electron populations 1.69850 1.07491 1.29120 1.50043 1.25857 0.96383 1.02190 0.97009 0.85506 0.79315 0.78123 0.79697 1.18494 1.19805 1.16741 1.19282 0.80898 0.95812 1.48225 0.89941 1.40832 1.04866 1.04579 1.69091 1.17176 0.89242 0.86120 0.95246 1.19689 0.98583 0.90481 1.18458 1.19088 0.94121 0.90278 1.07302 1.18269 0.77350 0.85008 0.73236 1.93121 1.67152 1.58842 1.96227 1.93177 1.75183 1.96804 1.51473 1.93180 1.75045 1.96807 1.51611 1.19236 0.90759 0.96506 1.14638 1.17613 0.84583 0.93349 1.02274 1.41691 1.04435 1.07749 1.64122 0.72742 1.22291 1.00004 0.81621 1.02777 1.21756 0.91239 0.98128 1.13916 1.19010 0.90739 0.95559 1.14772 0.91145 0.77635 0.88195 0.83714 0.76619 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 13.97 21.64 0.30 -53.88 15 2 C -0.01 -0.81 5.50 84.84 0.47 -0.35 15 3 Si 0.95 39.71 27.73 68.60 1.90 41.61 15 4 H -0.26 -10.44 7.11 99.48 0.71 -9.74 15 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 6 H -0.24 -9.09 6.52 99.48 0.65 -8.44 15 7 C -0.31 -17.31 10.03 84.03 0.84 -16.47 15 8 H 0.08 5.06 5.91 -2.91 -0.02 5.04 15 9 N -0.59 -27.96 5.23 -183.92 -0.96 -28.92 15 10 C 0.24 10.78 6.65 38.64 0.26 11.04 15 11 C -0.25 -11.18 8.82 22.44 0.20 -10.98 15 12 C -0.10 -4.02 5.37 -19.87 -0.11 -4.13 15 13 C 0.52 18.35 3.31 71.24 0.24 18.59 15 14 F -0.17 -5.26 15.93 44.97 0.72 -4.54 15 15 F -0.18 -6.90 17.23 44.97 0.77 -6.13 15 16 F -0.19 -6.91 17.23 44.97 0.77 -6.13 15 17 C -0.19 -6.10 9.44 22.42 0.21 -5.89 15 18 C 0.13 4.19 7.27 39.01 0.28 4.48 15 19 N -0.58 -12.27 6.07 -187.56 -1.14 -13.41 15 20 H 0.43 5.64 8.96 -92.71 -0.83 4.81 15 21 C 0.06 1.20 11.82 83.02 0.98 2.18 15 22 C -0.23 -6.53 10.86 23.48 0.25 -6.28 15 23 C -0.19 -7.16 6.27 -20.09 -0.13 -7.28 15 24 H 0.28 15.09 8.31 -92.71 -0.77 14.32 15 25 H 0.39 16.73 5.57 -92.71 -0.52 16.21 15 26 H 0.10 5.09 5.95 -2.91 -0.02 5.07 15 27 H 0.15 3.82 7.11 -2.91 -0.02 3.80 15 28 H 0.22 2.01 8.06 -2.91 -0.02 1.99 15 29 H 0.14 3.82 8.06 -2.91 -0.02 3.79 15 Total: -1.00 -65.88 267.39 5.71 -60.17 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -0.16 Total: 26.32 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 3.50 Total: -15.09 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -1.80 Total: -96.21 kcal Atomic # 9 Polarization: -19.07 SS G_CDS: 2.27 Total: -16.80 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.90 Total: 41.61 kcal Total: -65.88 5.71 -60.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186566.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.087 kcal (2) G-P(sol) polarization free energy of solvation -65.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds