Wall clock time and date at job start Mon Mar 30 2020 01:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30934 * 122.99788 * 2 1 4 4 C 1.30013 * 117.30624 * 179.72980 * 3 2 1 5 5 O 1.35269 * 124.73508 * 180.02562 * 4 3 2 6 6 S 1.70919 * 110.52365 * 359.97438 * 4 3 2 7 7 C 1.36675 * 122.99617 * 179.70293 * 2 1 3 8 8 C 1.46325 * 126.12032 * 0.24121 * 7 2 1 9 9 O 1.21728 * 120.00444 * 359.97438 * 8 7 2 10 10 N 1.34781 * 119.99633 * 179.97438 * 8 7 2 11 11 C 1.46499 * 119.99864 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47436 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47538 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47337 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99508 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00077 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99932 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99747 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46777 * 90.00441 * 18 16 14 20 20 H 1.48501 * 109.47250 * 209.99926 * 18 16 14 21 21 H 1.48495 * 109.47607 * 330.00250 * 18 16 14 22 22 H 1.09001 * 109.46811 * 90.02038 * 1 2 3 23 23 H 1.08993 * 109.47202 * 210.02317 * 1 2 3 24 24 H 1.09005 * 109.47000 * 330.02729 * 1 2 3 25 25 H 0.96703 * 113.99865 * 89.97593 * 5 4 3 26 26 H 0.96999 * 120.00453 * 359.97438 * 10 8 7 27 27 H 1.08997 * 109.47227 * 299.99968 * 11 10 8 28 28 H 1.09007 * 109.47118 * 60.00075 * 11 10 8 29 29 H 1.08997 * 109.47002 * 300.00247 * 12 11 10 30 30 H 1.09007 * 109.46790 * 60.00015 * 12 11 10 31 31 H 1.08997 * 109.47130 * 300.00113 * 13 12 11 32 32 H 1.09007 * 109.47113 * 60.00157 * 13 12 11 33 33 H 0.97000 * 120.00223 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.0981 0.0000 4 6 3.5137 0.9692 0.0054 5 8 4.3909 1.9989 0.0068 6 16 3.9513 -0.6830 0.0121 7 6 2.2513 -1.1463 0.0059 8 6 1.7297 -2.5134 0.0081 9 8 0.5278 -2.7064 0.0048 10 7 2.5801 -3.5591 0.0136 11 6 2.0579 -4.9278 0.0162 12 6 3.2238 -5.9185 0.0218 13 6 2.6785 -7.3480 0.0240 14 6 3.8270 -8.3238 0.0288 15 1 4.8440 -7.9606 0.0306 16 6 3.5792 -9.6801 0.0309 17 7 4.5814 -10.5316 0.0357 18 14 1.8199 -10.3081 0.0285 19 1 1.3568 -10.4773 -1.3722 20 1 1.7599 -11.6151 0.7309 21 1 0.9446 -9.3314 0.7247 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3633 0.8903 0.5134 25 1 4.6422 2.3004 0.8906 26 1 3.5378 -3.4054 0.0157 27 1 1.4459 -5.0815 0.9050 28 1 1.4508 -5.0869 -0.8750 29 1 3.8355 -5.7647 -0.8671 30 1 3.8313 -5.7596 0.9128 31 1 2.0666 -7.5021 0.9127 32 1 2.0713 -7.5066 -0.8673 33 1 4.4071 -11.4858 0.0375 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191413651.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:43 Heat of formation + Delta-G solvation = -41.428424 kcal Electronic energy + Delta-G solvation = -17460.147176 eV Core-core repulsion = 14419.996318 eV Total energy + Delta-G solvation = -3040.150858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.68086 -39.44640 -37.79726 -35.64926 -33.42262 -31.76029 -31.39601 -28.94644 -26.90734 -24.84119 -23.33483 -21.59277 -20.72433 -19.98356 -19.40554 -17.88464 -17.20919 -16.64843 -16.36298 -15.63167 -15.33148 -14.62742 -14.32320 -14.19722 -13.87080 -13.75907 -12.82370 -12.69017 -12.56813 -12.49290 -12.10265 -11.97796 -11.65785 -11.14757 -10.93617 -10.32468 -10.16664 -10.02997 -9.91399 -9.83917 -9.68390 -9.26608 -9.16735 -8.92130 -8.58437 -6.09081 -4.08155 -0.22276 0.54731 1.13741 2.00349 2.96850 3.01682 3.20573 3.29260 3.37074 3.40646 4.34949 4.41791 4.60531 4.77816 5.24924 5.35918 5.46591 5.48825 5.57374 5.60668 5.93194 6.03287 6.23179 6.37168 6.55483 6.58133 6.71815 7.15186 7.17864 7.31401 7.41271 7.72593 8.06032 8.47027 8.94523 9.52953 11.04133 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.036299 B = 0.003390 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.185623 B = 8258.468383 C = 8996.040785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.164 3.836 3 N -0.492 5.492 4 C 0.235 3.765 5 O -0.434 6.434 6 S 0.180 5.820 7 C -0.296 4.296 8 C 0.593 3.407 9 O -0.524 6.524 10 N -0.718 5.718 11 C 0.115 3.885 12 C -0.115 4.115 13 C -0.010 4.010 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.264 1.264 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.075 0.925 25 H 0.409 0.591 26 H 0.397 0.603 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.015 0.985 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 23.680 1.752 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.026 3.974 3 N -0.218 5.218 4 C -0.079 4.079 5 O -0.242 6.242 6 S 0.431 5.569 7 C -0.420 4.420 8 C 0.378 3.622 9 O -0.403 6.403 10 N -0.369 5.369 11 C -0.008 4.008 12 C -0.153 4.153 13 C -0.048 4.048 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 H 0.102 0.898 23 H 0.122 0.878 24 H 0.094 0.906 25 H 0.268 0.732 26 H 0.231 0.769 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.191 23.357 1.163 23.488 hybrid contribution -0.903 -0.100 0.403 0.994 sum -3.093 23.257 1.565 23.514 Atomic orbital electron populations 1.20702 0.85376 1.04732 1.04050 1.20616 0.98357 0.84113 0.94347 1.66187 1.04352 1.32568 1.18703 1.24635 0.88820 0.91794 1.02650 1.84800 1.57495 1.47350 1.34545 1.84195 1.05291 1.01679 1.65704 1.25727 0.95313 0.99485 1.21481 1.16549 0.86316 0.82250 0.77086 1.90804 1.14148 1.84840 1.50469 1.46092 1.09483 1.06876 1.74426 1.21752 0.98151 0.78471 1.02403 1.21731 0.95949 0.95712 1.01889 1.19499 0.97361 0.91244 0.96737 1.21086 0.93538 0.90261 1.51240 0.90997 1.25027 0.97058 0.96941 0.94427 1.69906 1.30986 1.02351 1.50887 0.86774 0.85567 0.78344 0.78606 1.20224 1.21358 1.18876 0.89789 0.87759 0.90594 0.73152 0.76876 0.91261 0.91273 0.91996 0.91984 0.96233 0.96665 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.71 36.00 0.35 -0.60 16 2 C 0.16 1.97 6.83 -83.54 -0.57 1.40 16 3 N -0.49 -5.78 10.53 -11.61 -0.12 -5.91 16 4 C 0.24 2.27 8.61 51.99 0.45 2.72 16 5 O -0.43 -3.11 13.63 -17.50 -0.24 -3.35 16 6 S 0.18 1.62 22.33 -107.50 -2.40 -0.78 16 7 C -0.30 -3.56 6.50 -36.90 -0.24 -3.80 16 8 C 0.59 8.42 7.77 -13.01 -0.10 8.32 16 9 O -0.52 -8.75 14.30 5.16 0.07 -8.67 16 10 N -0.72 -9.72 5.55 -61.73 -0.34 -10.06 16 11 C 0.11 1.80 5.67 -4.04 -0.02 1.78 16 12 C -0.11 -2.06 5.27 -26.73 -0.14 -2.21 16 13 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 14 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 15 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 18 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 22 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.10 1.23 6.03 -51.93 -0.31 0.92 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.41 0.67 9.06 45.56 0.41 1.08 16 26 H 0.40 4.52 7.64 -40.82 -0.31 4.21 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 32 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 300.70 15.07 4.53 4.53 Total: -1.00 -33.66 300.70 -6.32 -39.98 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.10 Total: -0.07 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.82 Total: -5.74 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.31 Total: -42.65 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.16 Total: -12.02 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.40 Total: -0.78 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.66 -6.32 -39.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191413651.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.451 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds