Wall clock time and date at job start Mon Mar 30 2020 01:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30934 * 122.99788 * 2 1 4 4 C 1.30013 * 117.30624 * 179.72980 * 3 2 1 5 5 O 1.35269 * 124.73508 * 180.02562 * 4 3 2 6 6 S 1.70919 * 110.52365 * 359.97438 * 4 3 2 7 7 C 1.36675 * 122.99617 * 179.70293 * 2 1 3 8 8 C 1.46325 * 126.12032 * 0.24121 * 7 2 1 9 9 O 1.21728 * 120.00444 * 359.97438 * 8 7 2 10 10 N 1.34781 * 119.99633 * 179.97438 * 8 7 2 11 11 C 1.46499 * 119.99864 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47436 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47538 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47337 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99508 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00077 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99932 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99747 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46777 * 90.00441 * 18 16 14 20 20 H 1.48501 * 109.47250 * 209.99926 * 18 16 14 21 21 H 1.48495 * 109.47607 * 330.00250 * 18 16 14 22 22 H 1.09001 * 109.46811 * 90.02038 * 1 2 3 23 23 H 1.08993 * 109.47202 * 210.02317 * 1 2 3 24 24 H 1.09005 * 109.47000 * 330.02729 * 1 2 3 25 25 H 0.96703 * 113.99865 * 89.97593 * 5 4 3 26 26 H 0.96999 * 120.00453 * 359.97438 * 10 8 7 27 27 H 1.08997 * 109.47227 * 299.99968 * 11 10 8 28 28 H 1.09007 * 109.47118 * 60.00075 * 11 10 8 29 29 H 1.08997 * 109.47002 * 300.00247 * 12 11 10 30 30 H 1.09007 * 109.46790 * 60.00015 * 12 11 10 31 31 H 1.08997 * 109.47130 * 300.00113 * 13 12 11 32 32 H 1.09007 * 109.47113 * 60.00157 * 13 12 11 33 33 H 0.97000 * 120.00223 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.0981 0.0000 4 6 3.5137 0.9692 0.0054 5 8 4.3909 1.9989 0.0068 6 16 3.9513 -0.6830 0.0121 7 6 2.2513 -1.1463 0.0059 8 6 1.7297 -2.5134 0.0081 9 8 0.5278 -2.7064 0.0048 10 7 2.5801 -3.5591 0.0136 11 6 2.0579 -4.9278 0.0162 12 6 3.2238 -5.9185 0.0218 13 6 2.6785 -7.3480 0.0240 14 6 3.8270 -8.3238 0.0288 15 1 4.8440 -7.9606 0.0306 16 6 3.5792 -9.6801 0.0309 17 7 4.5814 -10.5316 0.0357 18 14 1.8199 -10.3081 0.0285 19 1 1.3568 -10.4773 -1.3722 20 1 1.7599 -11.6151 0.7309 21 1 0.9446 -9.3314 0.7247 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3633 0.8903 0.5134 25 1 4.6422 2.3004 0.8906 26 1 3.5378 -3.4054 0.0157 27 1 1.4459 -5.0815 0.9050 28 1 1.4508 -5.0869 -0.8750 29 1 3.8355 -5.7647 -0.8671 30 1 3.8313 -5.7596 0.9128 31 1 2.0666 -7.5021 0.9127 32 1 2.0713 -7.5066 -0.8673 33 1 4.4071 -11.4858 0.0375 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191413651.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:43 Heat of formation + Delta-G solvation = -69.717659 kcal Electronic energy + Delta-G solvation = -17461.373889 eV Core-core repulsion = 14419.996318 eV Total energy + Delta-G solvation = -3041.377572 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.54868 -40.44576 -38.48503 -37.02171 -35.19492 -33.41460 -32.35986 -30.11191 -28.38903 -25.61467 -24.87331 -22.71066 -22.26624 -20.85886 -20.32684 -19.00594 -18.60952 -17.98768 -17.23848 -16.81090 -16.51569 -16.09836 -15.68991 -15.11957 -15.02812 -14.81332 -14.76188 -13.82066 -13.65182 -13.54154 -13.30663 -13.22157 -12.74727 -12.70079 -12.45029 -11.91850 -11.77303 -11.59313 -11.32241 -11.14793 -10.83722 -10.74939 -10.73204 -10.22104 -9.80313 -8.28129 -6.32094 -1.02320 -0.20412 0.34014 1.15529 1.38746 1.40375 1.51937 1.97422 1.99150 2.37776 2.43666 3.07959 3.66266 3.68204 3.89240 4.10542 4.20372 4.49475 4.56857 4.69412 4.80219 4.88135 4.89034 5.04012 5.20121 5.34627 5.48244 5.56700 5.66229 6.13916 6.28548 6.32205 6.44713 6.76281 7.00083 7.32854 8.88323 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.036299 B = 0.003390 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.185623 B = 8258.468383 C = 8996.040785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.163 3.837 3 N -0.518 5.518 4 C 0.245 3.755 5 O -0.436 6.436 6 S 0.233 5.767 7 C -0.327 4.327 8 C 0.595 3.405 9 O -0.554 6.554 10 N -0.713 5.713 11 C 0.127 3.873 12 C -0.103 4.103 13 C -0.012 4.012 14 C -0.531 4.531 15 H 0.037 0.963 16 C 0.004 3.996 17 N -0.951 5.951 18 Si 0.948 3.052 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.245 1.245 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.435 0.565 26 H 0.408 0.592 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 25.261 1.849 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.024 3.976 3 N -0.245 5.245 4 C -0.069 4.069 5 O -0.248 6.248 6 S 0.485 5.515 7 C -0.452 4.452 8 C 0.381 3.619 9 O -0.435 6.435 10 N -0.364 5.364 11 C 0.004 3.996 12 C -0.141 4.141 13 C -0.050 4.050 14 C -0.569 4.569 15 H 0.055 0.945 16 C -0.193 4.193 17 N -0.592 5.592 18 Si 0.771 3.229 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.169 1.169 22 H 0.105 0.895 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.299 0.701 26 H 0.244 0.756 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.716 24.979 1.280 25.159 hybrid contribution -0.545 -0.468 0.381 0.813 sum -3.261 24.512 1.661 24.783 Atomic orbital electron populations 1.20678 0.85116 1.04676 1.04222 1.20784 0.98898 0.84311 0.93630 1.66247 1.05307 1.32566 1.20398 1.24831 0.88729 0.92795 1.00510 1.84755 1.56625 1.46557 1.36834 1.83978 1.02365 1.00511 1.64619 1.25512 0.97527 0.98301 1.23826 1.16753 0.85896 0.82992 0.76222 1.90785 1.15424 1.85491 1.51830 1.45903 1.10105 1.05972 1.74441 1.21422 0.96877 0.79074 1.02216 1.21510 0.96642 0.93669 1.02273 1.19462 0.95702 0.92793 0.97006 1.21475 0.93722 0.91478 1.50205 0.94455 1.25991 1.01722 0.97335 0.94233 1.70057 1.33608 1.02802 1.52749 0.85695 0.80082 0.77953 0.79161 1.19303 1.21206 1.16854 0.89461 0.89136 0.89216 0.70113 0.75605 0.91489 0.91573 0.91722 0.91618 0.95838 0.96036 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 9.71 71.23 0.69 -1.13 16 2 C 0.16 3.74 6.83 42.32 0.29 4.03 16 3 N -0.52 -11.28 10.53 -304.84 -3.21 -14.49 16 4 C 0.25 4.14 8.61 130.51 1.12 5.27 16 5 O -0.44 -4.95 13.63 -85.53 -1.17 -6.12 16 6 S 0.23 3.66 22.33 -56.49 -1.26 2.40 16 7 C -0.33 -7.46 6.50 24.01 0.16 -7.30 16 8 C 0.59 16.31 7.77 86.35 0.67 16.98 16 9 O -0.55 -18.29 14.30 -4.44 -0.06 -18.35 16 10 N -0.71 -18.24 5.55 -467.41 -2.59 -20.84 16 11 C 0.13 3.82 5.67 86.38 0.49 4.31 16 12 C -0.10 -3.57 5.27 30.59 0.16 -3.41 16 13 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 14 C -0.53 -29.61 9.66 25.60 0.25 -29.37 16 15 H 0.04 2.27 7.99 -2.91 -0.02 2.24 16 16 C 0.00 0.23 5.47 84.66 0.46 0.69 16 17 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 18 Si 0.95 43.65 27.47 68.60 1.88 45.54 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 22 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.09 2.14 6.03 -2.39 -0.01 2.13 16 24 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.43 -0.01 9.06 -74.06 -0.67 -0.69 16 26 H 0.41 8.53 7.64 -92.71 -0.71 7.82 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 32 H 0.02 0.92 7.57 -2.38 -0.02 0.91 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -72.51 300.70 -1.97 -74.48 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -0.27 Total: 6.37 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 4.41 Total: -10.33 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -5.50 Total: -93.99 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -1.23 Total: -24.47 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.54 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.26 Total: 2.40 kcal Total: -72.51 -1.97 -74.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191413651.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.766 kcal (2) G-P(sol) polarization free energy of solvation -72.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds