Wall clock time and date at job start Mon Mar 30 2020 01:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21739 * 119.99616 * 0.02562 * 14 13 3 16 16 C 1.46319 * 120.00604 * 180.02562 * 14 13 3 17 17 S 1.76202 * 126.12398 * 359.68638 * 16 14 13 18 18 C 1.70916 * 90.41152 * 179.97438 * 17 16 14 19 19 O 1.35273 * 124.74001 * 180.02562 * 18 17 16 20 20 N 1.30014 * 110.52503 * 0.30470 * 18 17 16 21 21 C 1.30923 * 117.30255 * 359.75828 * 20 18 17 22 22 C 1.50702 * 122.99647 * 180.02562 * 21 20 18 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 30 30 H 0.96700 * 114.00058 * 270.25580 * 19 18 17 31 31 H 1.09000 * 109.46944 * 270.00463 * 22 21 20 32 32 H 1.09000 * 109.47084 * 30.00206 * 22 21 20 33 33 H 1.09000 * 109.47631 * 150.00012 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3425 2.6318 0.4308 16 6 0.0481 3.3191 2.6169 17 16 1.0376 3.4536 4.0687 18 6 -0.2153 4.3067 4.8584 19 8 -0.1501 4.7728 6.1267 20 7 -1.2420 4.4401 4.0721 21 6 -1.1478 3.9306 2.8697 22 6 -2.2588 4.0115 1.8547 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 2.2719 2.1232 1.9977 30 1 -0.4594 4.1441 6.7931 31 1 -2.9083 3.1422 1.9568 32 1 -2.8381 4.9196 2.0218 33 1 -1.8335 4.0315 0.8513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191419363.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:35 Heat of formation + Delta-G solvation = -35.767237 kcal Electronic energy + Delta-G solvation = -18547.884541 eV Core-core repulsion = 15507.979170 eV Total energy + Delta-G solvation = -3039.905371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28032 -38.96494 -37.47722 -35.13764 -32.51153 -31.36194 -30.85700 -28.35458 -26.71602 -24.50480 -23.24184 -21.71692 -19.75315 -19.64617 -19.21629 -17.46076 -17.15744 -16.04176 -15.66631 -15.28157 -14.76870 -14.28210 -13.98398 -13.81680 -13.35600 -12.74828 -12.39488 -12.26886 -12.21584 -12.05731 -11.58523 -11.31801 -11.27788 -11.02305 -10.86493 -10.36453 -10.25553 -9.81744 -9.70213 -9.50143 -9.23023 -9.09599 -8.69010 -8.55840 -7.93878 -6.17101 -4.26808 0.17644 0.91466 1.52795 2.39416 3.21864 3.29207 3.31093 3.38352 3.66803 3.95749 4.33638 4.68788 5.06113 5.14626 5.43272 5.73159 5.81882 5.93832 6.34620 6.40657 6.43580 6.60895 6.83857 6.98731 7.12678 7.26421 7.33474 7.49182 7.56546 7.65898 7.82929 8.11260 8.50794 8.68532 8.94186 9.40213 10.88235 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.005333 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.643849 B = 5249.039694 C = 5980.580853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.054 0.946 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.698 5.698 14 C 0.580 3.420 15 O -0.526 6.526 16 C -0.275 4.275 17 S 0.173 5.827 18 C 0.220 3.780 19 O -0.437 6.437 20 N -0.490 5.490 21 C 0.148 3.852 22 C -0.086 4.086 23 H 0.024 0.976 24 H 0.051 0.949 25 H 0.037 0.963 26 H 0.031 0.969 27 H 0.101 0.899 28 H 0.265 0.735 29 H 0.386 0.614 30 H 0.405 0.595 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.706 3.770 12.946 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.072 0.928 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.345 5.345 14 C 0.364 3.636 15 O -0.406 6.406 16 C -0.400 4.400 17 S 0.424 5.576 18 C -0.095 4.095 19 O -0.243 6.243 20 N -0.216 5.216 21 C 0.010 3.990 22 C -0.145 4.145 23 H 0.043 0.957 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.218 0.782 30 H 0.263 0.737 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.387 4.118 12.455 14.181 hybrid contribution 0.506 -0.277 0.265 0.634 sum -4.881 3.841 12.720 14.155 Atomic orbital electron populations 1.21851 0.98258 0.98206 1.01255 1.21948 0.92701 0.99581 1.02450 1.18887 0.94471 0.89271 0.80434 0.92849 1.21203 0.90512 1.39319 1.06463 0.92058 1.24868 0.98671 0.94691 0.95286 1.69887 1.35184 1.37428 1.09307 0.86447 0.84751 0.78487 0.77439 1.20505 1.21020 1.19831 1.46488 1.13775 1.55396 1.18864 1.16556 0.83317 0.79063 0.84675 1.90777 1.51378 1.59931 1.38542 1.26120 0.98718 1.14349 1.00786 1.84154 1.19470 1.47938 1.06040 1.24587 0.93293 0.99940 0.91639 1.84796 1.85031 1.43581 1.10942 1.66124 1.28517 1.21975 1.05031 1.20564 0.94724 0.93088 0.90577 1.20654 0.94186 1.02516 0.97134 0.95733 0.92960 0.94351 0.94975 0.88070 0.92481 0.78168 0.73691 0.90132 0.91078 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.66 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.60 2.24 -69.08 -0.15 6.44 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.81 8.73 -34.44 -0.30 -14.11 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.03 11.29 55.43 0.63 -23.40 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.70 -14.28 5.02 -56.36 -0.28 -14.56 16 14 C 0.58 11.41 6.33 -13.01 -0.08 11.33 16 15 O -0.53 -11.48 11.43 5.15 0.06 -11.42 16 16 C -0.28 -4.52 6.50 -36.90 -0.24 -4.76 16 17 S 0.17 2.22 22.33 -107.50 -2.40 -0.18 16 18 C 0.22 2.82 8.61 51.99 0.45 3.26 16 19 O -0.44 -4.30 13.63 -17.51 -0.24 -4.54 16 20 N -0.49 -7.33 10.53 -11.61 -0.12 -7.45 16 21 C 0.15 2.32 6.83 -83.54 -0.57 1.75 16 22 C -0.09 -1.22 9.71 36.01 0.35 -0.87 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 25 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 29 H 0.39 7.05 7.71 -40.82 -0.31 6.74 16 30 H 0.40 1.71 9.06 45.56 0.41 2.12 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.11 1.68 6.04 -51.93 -0.31 1.37 16 LS Contribution 291.73 15.07 4.40 4.40 Total: -1.00 -30.14 291.73 -6.31 -36.45 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -2.85 Total: 6.61 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.47 Total: -1.07 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.22 Total: -45.41 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.18 Total: -15.96 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.40 Total: -0.18 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.14 -6.31 -36.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191419363.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.685 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds