Wall clock time and date at job start Mon Mar 30 2020 01:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21739 * 119.99616 * 0.02562 * 14 13 3 16 16 C 1.46319 * 120.00604 * 180.02562 * 14 13 3 17 17 S 1.76202 * 126.12398 * 359.68638 * 16 14 13 18 18 C 1.70916 * 90.41152 * 179.97438 * 17 16 14 19 19 O 1.35273 * 124.74001 * 180.02562 * 18 17 16 20 20 N 1.30014 * 110.52503 * 0.30470 * 18 17 16 21 21 C 1.30923 * 117.30255 * 359.75828 * 20 18 17 22 22 C 1.50702 * 122.99647 * 180.02562 * 21 20 18 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 30 30 H 0.96700 * 114.00058 * 270.25580 * 19 18 17 31 31 H 1.09000 * 109.46944 * 270.00463 * 22 21 20 32 32 H 1.09000 * 109.47084 * 30.00206 * 22 21 20 33 33 H 1.09000 * 109.47631 * 150.00012 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3425 2.6318 0.4308 16 6 0.0481 3.3191 2.6169 17 16 1.0376 3.4536 4.0687 18 6 -0.2153 4.3067 4.8584 19 8 -0.1501 4.7728 6.1267 20 7 -1.2420 4.4401 4.0721 21 6 -1.1478 3.9306 2.8697 22 6 -2.2588 4.0115 1.8547 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 2.2719 2.1232 1.9977 30 1 -0.4594 4.1441 6.7931 31 1 -2.9083 3.1422 1.9568 32 1 -2.8381 4.9196 2.0218 33 1 -1.8335 4.0315 0.8513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191419363.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:34 Heat of formation + Delta-G solvation = -60.363057 kcal Electronic energy + Delta-G solvation = -18548.951096 eV Core-core repulsion = 15507.979170 eV Total energy + Delta-G solvation = -3040.971926 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47510 -40.40342 -38.46244 -36.91599 -34.36049 -33.00592 -32.16705 -29.80861 -28.43438 -25.56649 -25.07939 -23.22231 -21.43041 -20.98127 -20.38473 -18.80652 -18.52213 -17.45420 -17.14341 -16.94178 -16.33469 -15.85885 -15.29381 -15.00118 -14.77815 -14.58889 -13.88207 -13.55588 -13.47651 -13.26851 -13.18532 -13.12463 -12.87476 -12.65709 -12.41129 -12.15890 -12.06443 -11.57507 -11.06385 -10.94193 -10.73093 -10.62628 -10.51954 -9.86073 -9.62298 -8.15642 -6.32744 -0.93595 -0.14619 0.41660 1.24537 1.46095 1.47035 1.56972 2.19338 2.27181 2.43051 2.60425 3.14294 3.72541 3.84085 4.06300 4.51875 4.59448 4.61891 4.73223 4.77231 4.83801 5.08068 5.27565 5.29464 5.44534 5.53807 5.59767 5.78543 5.88802 6.16538 6.18640 6.45003 6.72700 6.85085 7.28793 7.44463 8.89628 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.005333 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.643849 B = 5249.039694 C = 5980.580853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.699 5.699 14 C 0.582 3.418 15 O -0.556 6.556 16 C -0.319 4.319 17 S 0.226 5.774 18 C 0.242 3.758 19 O -0.434 6.434 20 N -0.513 5.513 21 C 0.157 3.843 22 C -0.085 4.085 23 H 0.045 0.955 24 H 0.031 0.969 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.265 0.735 29 H 0.397 0.603 30 H 0.433 0.567 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 4.164 15.463 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.191 1.191 13 N -0.347 5.347 14 C 0.368 3.632 15 O -0.438 6.438 16 C -0.444 4.444 17 S 0.477 5.523 18 C -0.072 4.072 19 O -0.245 6.245 20 N -0.240 5.240 21 C 0.018 3.982 22 C -0.144 4.144 23 H 0.064 0.936 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.231 0.769 30 H 0.297 0.703 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.763 4.508 15.043 16.410 hybrid contribution 0.261 -0.317 -0.364 0.549 sum -4.501 4.191 14.679 15.915 Atomic orbital electron populations 1.21688 0.96774 0.99286 1.00423 1.21795 0.93947 0.98855 1.01426 1.18473 0.93826 0.89338 0.80735 0.97500 1.21540 0.91308 1.39212 1.06816 0.91241 1.25704 1.03117 0.94301 0.94947 1.70033 1.36991 1.38162 1.09798 0.85407 0.79312 0.78835 0.77166 1.19643 1.21243 1.19074 1.46212 1.14657 1.55899 1.17977 1.16869 0.82427 0.78340 0.85570 1.90758 1.52028 1.60866 1.40174 1.25673 1.00590 1.16794 1.01300 1.83925 1.17887 1.47060 1.03410 1.24780 0.92630 0.97444 0.92391 1.84751 1.85066 1.44497 1.10200 1.66220 1.29530 1.23360 1.04923 1.20727 0.94547 0.91937 0.90972 1.20630 0.94186 1.03784 0.95776 0.93556 0.95029 0.93892 0.94137 0.90707 0.92528 0.76859 0.70291 0.89237 0.89336 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.51 71.98 0.61 -4.81 16 2 C -0.12 -5.82 5.45 30.60 0.17 -5.65 16 3 C 0.28 13.99 2.24 44.25 0.10 14.09 16 4 H 0.01 0.42 7.58 -2.39 -0.02 0.40 16 5 C -0.55 -28.56 8.73 25.60 0.22 -28.34 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 1.05 5.29 84.66 0.45 1.49 16 8 N -0.91 -50.93 11.29 21.45 0.24 -50.69 16 9 Si 0.97 41.27 29.54 68.60 2.03 43.30 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 13 N -0.70 -28.85 5.02 -450.41 -2.26 -31.11 16 14 C 0.58 23.18 6.33 86.34 0.55 23.72 16 15 O -0.56 -25.17 11.43 -4.47 -0.05 -25.22 16 16 C -0.32 -10.21 6.50 24.01 0.16 -10.06 16 17 S 0.23 5.22 22.33 -56.49 -1.26 3.95 16 18 C 0.24 5.44 8.61 130.51 1.12 6.56 16 19 O -0.43 -6.79 13.63 -85.58 -1.17 -7.96 16 20 N -0.51 -14.17 10.53 -304.84 -3.21 -17.38 16 21 C 0.16 4.75 6.83 42.33 0.29 5.04 16 22 C -0.08 -2.38 9.71 71.24 0.69 -1.69 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.03 1.47 7.84 -2.39 -0.02 1.45 16 25 H 0.04 1.81 5.64 -2.38 -0.01 1.79 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 4.02 5.95 -2.39 -0.01 4.00 16 28 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.40 14.28 7.71 -92.71 -0.71 13.57 16 30 H 0.43 1.70 9.06 -74.06 -0.67 1.03 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 2.76 6.04 -2.39 -0.01 2.75 16 Total: -1.00 -65.80 291.73 -1.54 -67.34 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -0.21 Total: 17.40 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 4.36 Total: 0.37 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -5.23 Total: -99.17 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.22 Total: -33.18 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.26 Total: 3.95 kcal Total: -65.80 -1.54 -67.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191419363.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.978 kcal (2) G-P(sol) polarization free energy of solvation -65.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds