Wall clock time and date at job start Mon Mar 30 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47315 * 2 1 4 4 C 1.50706 * 109.47148 * 120.00244 * 2 1 3 5 5 C 1.38063 * 119.56785 * 274.99806 * 4 2 1 6 6 C 1.38844 * 119.32790 * 179.97438 * 5 4 2 7 7 C 1.38340 * 118.50480 * 359.97438 * 6 5 4 8 8 C 1.39100 * 119.09815 * 0.02562 * 7 6 5 9 9 N 1.38999 * 119.70719 * 180.02562 * 8 7 6 10 10 S 1.65598 * 119.99874 * 359.97438 * 9 8 7 11 11 O 1.42109 * 106.40384 * 178.54133 * 10 9 8 12 12 O 1.42097 * 106.40266 * 311.46054 * 10 9 8 13 13 C 1.76199 * 107.21914 * 65.00378 * 10 9 8 14 14 H 1.07992 * 119.99871 * 359.97438 * 13 10 9 15 15 C 1.37875 * 119.99968 * 180.02562 * 13 10 9 16 16 N 1.31517 * 120.00298 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 119.99838 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47394 * 89.99914 * 17 15 13 19 19 H 1.48504 * 109.47016 * 209.99942 * 17 15 13 20 20 H 1.48500 * 109.47349 * 329.99747 * 17 15 13 21 21 N 1.31937 * 119.57583 * 94.72671 * 4 2 1 22 22 H 1.09002 * 109.47121 * 59.99906 * 1 2 3 23 23 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47093 * 300.00118 * 1 2 3 25 25 H 1.09001 * 109.47093 * 239.99882 * 2 1 3 26 26 H 1.08998 * 109.46782 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46670 * 299.99790 * 3 2 1 28 28 H 1.08997 * 109.46486 * 59.99616 * 3 2 1 29 29 H 1.08003 * 120.34002 * 359.97438 * 5 4 2 30 30 H 1.07993 * 120.74836 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.45274 * 179.97438 * 7 6 5 32 32 H 0.97006 * 120.00160 * 179.97438 * 9 8 7 33 33 H 0.96994 * 119.99858 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.1608 -0.0131 2.4151 6 6 2.6236 -0.6728 3.5458 7 6 2.9410 -2.0153 3.4433 8 6 2.7872 -2.6552 2.2179 9 7 3.1019 -4.0040 2.1008 10 16 3.6578 -4.8418 3.4166 11 8 3.8520 -6.1822 2.9862 12 8 4.6912 -4.0516 3.9882 13 6 2.3516 -4.8832 4.5985 14 1 1.4079 -4.4070 4.3772 15 6 2.5347 -5.5227 5.8062 16 7 3.6840 -6.1022 6.0759 17 14 1.1501 -5.5659 7.0594 18 1 0.3129 -6.7709 6.8308 19 1 1.7231 -5.6137 8.4286 20 1 0.3136 -4.3474 6.9152 21 7 2.3386 -1.9921 1.1631 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.9039 1.0349 2.4619 30 1 2.7325 -0.1497 4.4843 31 1 3.3041 -2.5591 4.3029 32 1 2.9959 -4.4546 1.2483 33 1 3.8126 -6.5524 6.9253 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192939611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:38 Heat of formation + Delta-G solvation = -67.081783 kcal Electronic energy + Delta-G solvation = -18749.696131 eV Core-core repulsion = 15708.432860 eV Total energy + Delta-G solvation = -3041.263272 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.09313 -36.26286 -35.43761 -34.25490 -33.82412 -33.19473 -31.85045 -28.52920 -27.16544 -26.31946 -23.87066 -22.65416 -20.58630 -18.99661 -17.73262 -17.41064 -16.43580 -16.10581 -15.28236 -14.86532 -14.55011 -14.37044 -14.17296 -13.77411 -13.58741 -12.94666 -12.82401 -12.39468 -12.16462 -11.82516 -11.58064 -11.33607 -11.29919 -11.26451 -10.94175 -10.73813 -10.68000 -10.63360 -10.51333 -10.29239 -9.37549 -9.34281 -9.12404 -8.99546 -7.79134 -6.84254 -5.48615 1.58909 1.74278 1.92538 3.00779 3.07695 3.14330 3.90989 4.17627 4.20103 4.50825 4.54343 4.85039 5.14243 5.22268 5.30148 5.38461 5.45816 5.56069 5.59133 5.72922 5.78668 5.79945 5.92513 6.13946 6.19191 6.23389 6.25892 6.39853 6.51908 6.77566 7.09261 7.19323 7.63219 7.82145 8.39325 8.74108 10.10132 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.005914 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.216591 B = 4733.262610 C = 5170.682834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.145 4.145 4 C 0.159 3.841 5 C -0.219 4.219 6 C -0.040 4.040 7 C -0.217 4.217 8 C 0.403 3.597 9 N -1.046 6.046 10 S 2.701 3.299 11 O -0.989 6.989 12 O -0.988 6.988 13 C -1.015 5.015 14 H 0.107 0.893 15 C 0.135 3.865 16 N -0.842 5.842 17 Si 0.925 3.075 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.261 1.261 21 N -0.527 5.527 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.167 0.833 32 H 0.418 0.582 33 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.548 12.291 -6.541 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 C -0.203 4.203 4 C 0.021 3.979 5 C -0.241 4.241 6 C -0.066 4.066 7 C -0.240 4.240 8 C 0.169 3.831 9 N -0.786 5.786 10 S 2.801 3.199 11 O -0.979 6.979 12 O -0.978 6.978 13 C -1.149 5.149 14 H 0.125 0.875 15 C -0.084 4.084 16 N -0.471 5.471 17 Si 0.748 3.252 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.185 1.185 21 N -0.243 5.243 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.154 0.846 31 H 0.184 0.816 32 H 0.251 0.749 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.558 11.330 -6.998 14.076 hybrid contribution -1.171 0.128 1.241 1.711 sum -5.729 11.458 -5.757 14.045 Atomic orbital electron populations 1.21788 0.93863 1.02358 1.01752 1.20004 0.96010 0.95181 0.95198 1.21905 1.01399 0.94980 1.01981 1.20763 0.93999 0.88616 0.94563 1.21681 1.07322 1.01350 0.93724 1.21309 0.93508 0.93302 0.98454 1.22342 1.05912 0.97055 0.98728 1.17949 0.90641 0.84857 0.89651 1.54446 1.78382 1.15342 1.30386 1.01211 0.75373 0.71534 0.71764 1.93411 1.87074 1.35241 1.82195 1.93396 1.57661 1.70717 1.76001 1.30370 1.18804 1.49254 1.16516 0.87464 1.24744 0.96537 0.89713 0.97452 1.69881 1.23275 1.28302 1.25606 0.86085 0.80652 0.79829 0.78630 1.19055 1.19805 1.18467 1.66960 1.16992 1.09493 1.30884 0.92243 0.92264 0.92481 0.89527 0.92362 0.92207 0.92075 0.85159 0.84609 0.81560 0.74900 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.18 37.16 0.34 -1.11 16 2 C -0.04 -0.52 3.23 -91.77 -0.30 -0.82 16 3 C -0.15 -1.33 8.62 37.16 0.32 -1.01 16 4 C 0.16 2.48 5.79 -82.61 -0.48 2.00 16 5 C -0.22 -3.16 9.17 -39.42 -0.36 -3.52 16 6 C -0.04 -0.65 10.17 -39.32 -0.40 -1.05 16 7 C -0.22 -4.42 8.46 -39.22 -0.33 -4.76 16 8 C 0.40 8.39 7.57 -155.01 -1.17 7.22 16 9 N -1.05 -22.50 5.87 31.12 0.18 -22.32 16 10 S 2.70 70.47 4.56 -107.50 -0.49 69.98 16 11 O -0.99 -28.36 18.02 -57.17 -1.03 -29.39 16 12 O -0.99 -27.61 15.60 -57.17 -0.89 -28.51 16 13 C -1.02 -26.92 8.33 30.60 0.25 -26.66 16 14 H 0.11 2.65 7.81 -52.49 -0.41 2.24 16 15 C 0.13 3.59 5.46 -17.82 -0.10 3.50 16 16 N -0.84 -23.69 13.19 55.43 0.73 -22.95 16 17 Si 0.92 19.85 29.54 -169.99 -5.02 14.83 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 21 N -0.53 -9.86 10.30 -8.67 -0.09 -9.95 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.51 6.48 -51.93 -0.34 0.17 16 29 H 0.13 1.44 6.30 -52.48 -0.33 1.10 16 30 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.17 3.78 4.74 -52.49 -0.25 3.53 16 32 H 0.42 7.89 8.95 -34.47 -0.31 7.59 16 33 H 0.29 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 293.88 15.07 4.43 4.43 Total: -1.00 -33.01 293.88 -8.13 -41.14 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -3.73 Total: 8.95 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -2.22 Total: -26.21 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.82 Total: -55.23 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -1.92 Total: -57.90 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 70.47 SS G_CDS: -0.49 Total: 69.98 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.01 -8.13 -41.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.944 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds