Wall clock time and date at job start Mon Mar 30 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47315 * 2 1 4 4 C 1.50706 * 109.47148 * 120.00244 * 2 1 3 5 5 C 1.38063 * 119.56785 * 274.99806 * 4 2 1 6 6 C 1.38844 * 119.32790 * 179.97438 * 5 4 2 7 7 C 1.38340 * 118.50480 * 359.97438 * 6 5 4 8 8 C 1.39100 * 119.09815 * 0.02562 * 7 6 5 9 9 N 1.38999 * 119.70719 * 180.02562 * 8 7 6 10 10 S 1.65598 * 119.99874 * 359.97438 * 9 8 7 11 11 O 1.42109 * 106.40384 * 178.54133 * 10 9 8 12 12 O 1.42097 * 106.40266 * 311.46054 * 10 9 8 13 13 C 1.76199 * 107.21914 * 65.00378 * 10 9 8 14 14 H 1.07992 * 119.99871 * 359.97438 * 13 10 9 15 15 C 1.37875 * 119.99968 * 180.02562 * 13 10 9 16 16 N 1.31517 * 120.00298 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 119.99838 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47394 * 89.99914 * 17 15 13 19 19 H 1.48504 * 109.47016 * 209.99942 * 17 15 13 20 20 H 1.48500 * 109.47349 * 329.99747 * 17 15 13 21 21 N 1.31937 * 119.57583 * 94.72671 * 4 2 1 22 22 H 1.09002 * 109.47121 * 59.99906 * 1 2 3 23 23 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47093 * 300.00118 * 1 2 3 25 25 H 1.09001 * 109.47093 * 239.99882 * 2 1 3 26 26 H 1.08998 * 109.46782 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46670 * 299.99790 * 3 2 1 28 28 H 1.08997 * 109.46486 * 59.99616 * 3 2 1 29 29 H 1.08003 * 120.34002 * 359.97438 * 5 4 2 30 30 H 1.07993 * 120.74836 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.45274 * 179.97438 * 7 6 5 32 32 H 0.97006 * 120.00160 * 179.97438 * 9 8 7 33 33 H 0.96994 * 119.99858 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.1608 -0.0131 2.4151 6 6 2.6236 -0.6728 3.5458 7 6 2.9410 -2.0153 3.4433 8 6 2.7872 -2.6552 2.2179 9 7 3.1019 -4.0040 2.1008 10 16 3.6578 -4.8418 3.4166 11 8 3.8520 -6.1822 2.9862 12 8 4.6912 -4.0516 3.9882 13 6 2.3516 -4.8832 4.5985 14 1 1.4079 -4.4070 4.3772 15 6 2.5347 -5.5227 5.8062 16 7 3.6840 -6.1022 6.0759 17 14 1.1501 -5.5659 7.0594 18 1 0.3129 -6.7709 6.8308 19 1 1.7231 -5.6137 8.4286 20 1 0.3136 -4.3474 6.9152 21 7 2.3386 -1.9921 1.1631 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.9039 1.0349 2.4619 30 1 2.7325 -0.1497 4.4843 31 1 3.3041 -2.5591 4.3029 32 1 2.9959 -4.4546 1.2483 33 1 3.8126 -6.5524 6.9253 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192939611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:38 Heat of formation + Delta-G solvation = -91.643798 kcal Electronic energy + Delta-G solvation = -18750.761220 eV Core-core repulsion = 15708.432860 eV Total energy + Delta-G solvation = -3042.328361 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44165 -37.84675 -37.23167 -36.40299 -35.37362 -35.00967 -33.20894 -29.87999 -28.37685 -27.92725 -25.10282 -24.04975 -21.86088 -20.84901 -19.54657 -19.00653 -18.28031 -17.46440 -17.06531 -16.39919 -16.19998 -15.97926 -15.54396 -15.18440 -14.90664 -14.14311 -14.07337 -13.84122 -13.58060 -13.41334 -13.05488 -12.97158 -12.80735 -12.71552 -12.45838 -12.34444 -12.30835 -12.11468 -11.90155 -11.70513 -11.29448 -11.04822 -10.70374 -10.47114 -9.25941 -8.82645 -7.58344 -0.05604 0.23078 0.40187 1.33562 1.33735 1.50988 2.14796 2.47908 2.53268 2.81490 3.25754 3.52319 3.74782 3.86225 4.14637 4.23687 4.28527 4.36172 4.40475 4.50640 4.78983 4.88894 4.91344 5.02645 5.05701 5.06943 5.20260 5.24780 5.40521 5.43644 5.48660 5.73624 5.80526 6.06491 6.68967 7.01076 8.14188 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.005914 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.216591 B = 4733.262610 C = 5170.682834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.045 4.045 3 C -0.141 4.141 4 C 0.151 3.849 5 C -0.201 4.201 6 C -0.035 4.035 7 C -0.252 4.252 8 C 0.372 3.628 9 N -1.042 6.042 10 S 2.712 3.288 11 O -1.026 7.026 12 O -1.017 7.017 13 C -1.027 5.027 14 H 0.118 0.882 15 C 0.077 3.923 16 N -0.887 5.887 17 Si 0.993 3.007 18 H -0.256 1.256 19 H -0.258 1.258 20 H -0.248 1.248 21 N -0.539 5.539 22 H 0.084 0.916 23 H 0.038 0.962 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.177 0.823 30 H 0.169 0.831 31 H 0.137 0.863 32 H 0.425 0.575 33 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.727 15.213 -6.486 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.064 4.064 3 C -0.198 4.198 4 C 0.013 3.987 5 C -0.221 4.221 6 C -0.061 4.061 7 C -0.276 4.276 8 C 0.140 3.860 9 N -0.786 5.786 10 S 2.814 3.186 11 O -1.016 7.016 12 O -1.006 7.006 13 C -1.161 5.161 14 H 0.136 0.864 15 C -0.138 4.138 16 N -0.518 5.518 17 Si 0.811 3.189 18 H -0.180 1.180 19 H -0.182 1.182 20 H -0.171 1.171 21 N -0.256 5.256 22 H 0.103 0.897 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.194 0.806 30 H 0.186 0.814 31 H 0.154 0.846 32 H 0.260 0.740 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.721 14.263 -6.972 17.240 hybrid contribution -0.506 -0.620 1.092 1.354 sum -7.227 13.643 -5.880 16.520 Atomic orbital electron populations 1.21781 0.92523 1.01598 1.03514 1.20166 0.96976 0.96376 0.92894 1.21905 1.01024 0.93014 1.03893 1.21653 0.92595 0.87692 0.96803 1.22169 1.04628 1.03151 0.92186 1.21743 0.92022 0.91664 1.00634 1.22284 1.08480 0.99081 0.97750 1.18068 0.92768 0.84417 0.90712 1.53797 1.79005 1.16231 1.29568 1.00543 0.75367 0.70699 0.72016 1.93350 1.87774 1.37482 1.83022 1.93347 1.59230 1.71057 1.77014 1.30573 1.19086 1.49480 1.16996 0.86354 1.25971 0.99329 0.88790 0.99661 1.69961 1.25552 1.29415 1.26861 0.85082 0.77145 0.80572 0.76127 1.17994 1.18159 1.17118 1.66994 1.17278 1.11137 1.30171 0.89691 0.94307 0.91543 0.90292 0.92989 0.89990 0.90552 0.80616 0.81381 0.84553 0.73952 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.18 71.98 0.66 -1.72 16 2 C -0.04 -0.92 3.23 -11.54 -0.04 -0.96 16 3 C -0.14 -1.97 8.62 71.98 0.62 -1.35 16 4 C 0.15 4.39 5.79 42.50 0.25 4.64 16 5 C -0.20 -5.08 9.17 22.37 0.21 -4.88 16 6 C -0.03 -1.07 10.17 22.44 0.23 -0.84 16 7 C -0.25 -10.42 8.46 22.50 0.19 -10.23 16 8 C 0.37 15.83 7.57 133.05 1.01 16.83 16 9 N -1.04 -46.90 5.87 -55.44 -0.33 -47.23 16 10 S 2.71 148.22 4.56 -56.49 -0.26 147.96 16 11 O -1.03 -61.72 18.02 -128.00 -2.31 -64.03 16 12 O -1.02 -59.83 15.60 -128.00 -2.00 -61.82 16 13 C -1.03 -55.80 8.33 67.73 0.56 -55.23 16 14 H 0.12 5.95 7.81 -2.91 -0.02 5.93 16 15 C 0.08 4.14 5.46 84.65 0.46 4.60 16 16 N -0.89 -51.22 13.19 21.45 0.28 -50.94 16 17 Si 0.99 40.09 29.54 68.60 2.03 42.11 16 18 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 21 N -0.54 -20.05 10.30 -181.34 -1.87 -21.92 16 22 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 23 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.85 6.48 -2.39 -0.02 0.83 16 29 H 0.18 2.85 6.30 -2.91 -0.02 2.83 16 30 H 0.17 3.90 8.06 -2.91 -0.02 3.87 16 31 H 0.14 6.48 4.74 -2.91 -0.01 6.46 16 32 H 0.43 16.98 8.95 -96.74 -0.87 16.12 16 33 H 0.30 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -74.68 293.88 -0.03 -74.71 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.27 Total: 30.29 kcal Atomic # 6 Polarization: -53.28 SS G_CDS: 4.15 Total: -49.14 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -1.91 Total: -120.08 kcal Atomic # 8 Polarization: -121.55 SS G_CDS: -4.30 Total: -125.86 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: 148.22 SS G_CDS: -0.26 Total: 147.96 kcal Total: -74.68 -0.03 -74.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.936 kcal (2) G-P(sol) polarization free energy of solvation -74.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds