Wall clock time and date at job start Mon Mar 30 2020 01:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46869 * 2 1 4 4 C 1.50700 * 109.46985 * 179.97438 * 3 2 1 5 5 C 1.38886 * 120.74861 * 270.28668 * 4 3 2 6 6 C 1.38026 * 119.33120 * 180.29789 * 5 4 3 7 7 N 1.31974 * 120.85540 * 359.68539 * 6 5 4 8 8 C 1.32400 * 121.61845 * 0.02562 * 7 6 5 9 9 N 1.39009 * 119.69949 * 180.02562 * 8 7 6 10 10 S 1.65596 * 119.99904 * 359.97438 * 9 8 7 11 11 O 1.42106 * 106.39730 * 178.54312 * 10 9 8 12 12 O 1.42104 * 106.40582 * 311.45725 * 10 9 8 13 13 C 1.76192 * 107.22073 * 65.00417 * 10 9 8 14 14 H 1.08004 * 119.99754 * 359.97438 * 13 10 9 15 15 C 1.37882 * 120.00529 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99187 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00334 * 179.97438 * 15 13 10 18 18 H 1.48492 * 109.47102 * 89.99605 * 17 15 13 19 19 H 1.48498 * 109.47225 * 210.00076 * 17 15 13 20 20 H 1.48506 * 109.46868 * 329.99559 * 17 15 13 21 21 C 1.38297 * 120.74853 * 89.99649 * 4 3 2 22 22 H 1.08990 * 109.47301 * 300.00206 * 1 2 3 23 23 H 1.09004 * 109.46632 * 60.00004 * 1 2 3 24 24 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47656 * 239.99930 * 2 1 3 26 26 H 1.08998 * 109.47227 * 119.99655 * 2 1 3 27 27 H 1.08996 * 109.47320 * 60.00277 * 3 2 1 28 28 H 1.08990 * 109.47309 * 299.99331 * 3 2 1 29 29 H 1.08003 * 120.33334 * 0.02562 * 5 4 3 30 30 H 1.08004 * 119.57370 * 179.69860 * 6 5 4 31 31 H 0.96994 * 119.99656 * 179.97438 * 9 8 7 32 32 H 0.97008 * 119.99412 * 179.97438 * 16 15 13 33 33 H 1.08002 * 120.45299 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2565 1.4368 1.1945 6 6 5.6364 1.4433 1.1610 7 7 6.2855 1.4486 0.0120 8 6 5.6453 1.4485 -1.1470 9 7 6.3691 1.4537 -2.3337 10 16 8.0246 1.4606 -2.2937 11 8 8.4587 1.4302 -3.6465 12 8 8.3997 2.4822 -1.3799 13 6 8.5353 -0.0639 -1.5729 14 1 7.7969 -0.7858 -1.2567 15 6 9.8776 -0.3352 -1.4125 16 7 10.7767 0.5437 -1.7981 17 14 10.4190 -1.9512 -0.6477 18 1 10.5948 -2.9693 -1.7143 19 1 11.7064 -1.7543 0.0658 20 1 9.3862 -2.4144 0.3135 21 6 4.2545 1.4424 -1.1876 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.7339 1.4318 2.1397 30 1 6.1921 1.4438 2.0871 31 1 5.9045 1.4532 -3.1851 32 1 11.7211 0.3530 -1.6850 33 1 3.7346 1.4426 -2.1343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:55 Heat of formation + Delta-G solvation = -70.378393 kcal Electronic energy + Delta-G solvation = -18485.396625 eV Core-core repulsion = 15443.990402 eV Total energy + Delta-G solvation = -3041.406223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.01003 -35.97737 -35.15371 -34.36982 -33.92629 -32.98716 -31.84485 -29.12691 -27.05575 -26.04628 -23.11446 -22.45169 -21.06487 -18.95903 -17.66558 -17.35123 -16.28179 -15.72885 -15.59997 -14.90057 -14.64380 -14.33400 -14.13969 -13.83988 -13.55253 -13.38367 -13.07551 -12.32887 -11.98254 -11.74907 -11.54387 -11.44504 -11.22866 -11.15411 -10.86590 -10.76013 -10.66005 -10.53870 -10.23238 -10.12212 -9.23889 -9.16453 -8.89871 -8.74960 -7.89958 -6.62923 -5.20237 1.55925 1.65343 2.19869 3.12053 3.17790 3.25697 4.03072 4.19945 4.25493 4.61524 4.72576 4.77435 4.93679 5.05774 5.25516 5.27346 5.37753 5.45759 5.58153 5.61065 5.65579 5.79181 5.85268 5.97201 6.05841 6.09021 6.14492 6.39781 6.60925 6.68104 7.04314 7.39916 7.58109 8.05184 8.51544 8.96924 10.32233 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024929 B = 0.005528 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.935095 B = 5063.722263 C = 5487.805491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.079 4.079 4 C -0.015 4.015 5 C -0.224 4.224 6 C 0.151 3.849 7 N -0.497 5.497 8 C 0.405 3.595 9 N -1.047 6.047 10 S 2.701 3.299 11 O -1.002 7.002 12 O -0.974 6.974 13 C -0.992 4.992 14 H 0.099 0.901 15 C 0.134 3.866 16 N -0.849 5.849 17 Si 0.923 3.077 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.263 1.263 21 C -0.219 4.219 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.129 0.871 30 H 0.158 0.842 31 H 0.419 0.581 32 H 0.290 0.710 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.189 -1.135 4.728 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.116 4.116 4 C -0.023 4.023 5 C -0.246 4.246 6 C -0.008 4.008 7 N -0.212 5.212 8 C 0.171 3.829 9 N -0.786 5.786 10 S 2.802 3.198 11 O -0.992 6.992 12 O -0.964 6.964 13 C -1.127 5.127 14 H 0.118 0.882 15 C -0.084 4.084 16 N -0.479 5.479 17 Si 0.747 3.253 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.187 1.187 21 C -0.245 4.245 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.147 0.853 30 H 0.175 0.825 31 H 0.252 0.748 32 H 0.100 0.900 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.390 -0.318 4.421 16.015 hybrid contribution -0.841 -1.399 0.206 1.645 sum -16.230 -1.717 4.627 16.964 Atomic orbital electron populations 1.21782 0.95704 1.01664 1.01764 1.21506 0.95542 0.95923 1.02783 1.20632 0.90300 0.97620 1.03070 1.19977 0.95681 0.94082 0.92561 1.21761 0.95427 1.09221 0.98178 1.22485 0.91244 0.91965 0.95056 1.67403 1.40200 1.16474 0.97137 1.18033 0.88175 0.90450 0.86284 1.54396 1.29863 1.84525 1.09814 1.01067 0.68474 0.76833 0.73440 1.93405 1.77396 1.89587 1.38853 1.93388 1.78281 1.59795 1.64921 1.30198 1.00009 1.25187 1.57300 0.88229 1.24704 0.94857 0.98120 0.90671 1.69897 1.03437 1.34772 1.39842 0.86137 0.78393 0.81248 0.79556 1.19371 1.19999 1.18733 1.21377 0.92832 1.11172 0.99103 0.92742 0.92717 0.92703 0.91628 0.91632 0.90677 0.90787 0.85320 0.82495 0.74826 0.89998 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 3 C -0.08 -0.75 5.39 -27.88 -0.15 -0.90 16 4 C -0.01 -0.19 5.17 -104.36 -0.54 -0.73 16 5 C -0.22 -3.01 9.81 -39.42 -0.39 -3.40 16 6 C 0.15 2.53 11.17 -17.57 -0.20 2.34 16 7 N -0.50 -10.75 8.33 -12.43 -0.10 -10.86 16 8 C 0.40 8.08 7.33 -155.01 -1.14 6.94 16 9 N -1.05 -21.98 5.85 31.13 0.18 -21.80 16 10 S 2.70 74.17 4.65 -107.50 -0.50 73.67 16 11 O -1.00 -29.61 18.02 -57.17 -1.03 -30.64 16 12 O -0.97 -29.54 16.89 -57.17 -0.97 -30.51 16 13 C -0.99 -28.24 9.33 30.60 0.29 -27.95 16 14 H 0.10 2.67 7.81 -52.48 -0.41 2.26 16 15 C 0.13 3.82 5.46 -17.82 -0.10 3.72 16 16 N -0.85 -25.45 13.19 55.43 0.73 -24.72 16 17 Si 0.92 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 21 C -0.22 -3.37 9.64 -39.23 -0.38 -3.74 16 22 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 29 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 30 H 0.16 2.22 8.06 -52.48 -0.42 1.79 16 31 H 0.42 7.03 8.82 -34.47 -0.30 6.73 16 32 H 0.29 7.80 8.31 -40.82 -0.34 7.46 16 33 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 302.95 15.07 4.57 4.57 Total: -1.00 -36.88 302.95 -8.60 -45.48 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.07 Total: 4.25 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -2.39 Total: -25.66 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.81 Total: -57.37 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -2.00 Total: -61.14 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 74.17 SS G_CDS: -0.50 Total: 73.67 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.88 -8.60 -45.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.894 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds