Wall clock time and date at job start Mon Mar 30 2020 01:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46869 * 2 1 4 4 C 1.50700 * 109.46985 * 179.97438 * 3 2 1 5 5 C 1.38886 * 120.74861 * 270.28668 * 4 3 2 6 6 C 1.38026 * 119.33120 * 180.29789 * 5 4 3 7 7 N 1.31974 * 120.85540 * 359.68539 * 6 5 4 8 8 C 1.32400 * 121.61845 * 0.02562 * 7 6 5 9 9 N 1.39009 * 119.69949 * 180.02562 * 8 7 6 10 10 S 1.65596 * 119.99904 * 359.97438 * 9 8 7 11 11 O 1.42106 * 106.39730 * 178.54312 * 10 9 8 12 12 O 1.42104 * 106.40582 * 311.45725 * 10 9 8 13 13 C 1.76192 * 107.22073 * 65.00417 * 10 9 8 14 14 H 1.08004 * 119.99754 * 359.97438 * 13 10 9 15 15 C 1.37882 * 120.00529 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99187 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00334 * 179.97438 * 15 13 10 18 18 H 1.48492 * 109.47102 * 89.99605 * 17 15 13 19 19 H 1.48498 * 109.47225 * 210.00076 * 17 15 13 20 20 H 1.48506 * 109.46868 * 329.99559 * 17 15 13 21 21 C 1.38297 * 120.74853 * 89.99649 * 4 3 2 22 22 H 1.08990 * 109.47301 * 300.00206 * 1 2 3 23 23 H 1.09004 * 109.46632 * 60.00004 * 1 2 3 24 24 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47656 * 239.99930 * 2 1 3 26 26 H 1.08998 * 109.47227 * 119.99655 * 2 1 3 27 27 H 1.08996 * 109.47320 * 60.00277 * 3 2 1 28 28 H 1.08990 * 109.47309 * 299.99331 * 3 2 1 29 29 H 1.08003 * 120.33334 * 0.02562 * 5 4 3 30 30 H 1.08004 * 119.57370 * 179.69860 * 6 5 4 31 31 H 0.96994 * 119.99656 * 179.97438 * 9 8 7 32 32 H 0.97008 * 119.99412 * 179.97438 * 16 15 13 33 33 H 1.08002 * 120.45299 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2565 1.4368 1.1945 6 6 5.6364 1.4433 1.1610 7 7 6.2855 1.4486 0.0120 8 6 5.6453 1.4485 -1.1470 9 7 6.3691 1.4537 -2.3337 10 16 8.0246 1.4606 -2.2937 11 8 8.4587 1.4302 -3.6465 12 8 8.3997 2.4822 -1.3799 13 6 8.5353 -0.0639 -1.5729 14 1 7.7969 -0.7858 -1.2567 15 6 9.8776 -0.3352 -1.4125 16 7 10.7767 0.5437 -1.7981 17 14 10.4190 -1.9512 -0.6477 18 1 10.5948 -2.9693 -1.7143 19 1 11.7064 -1.7543 0.0658 20 1 9.3862 -2.4144 0.3135 21 6 4.2545 1.4424 -1.1876 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.7339 1.4318 2.1397 30 1 6.1921 1.4438 2.0871 31 1 5.9045 1.4532 -3.1851 32 1 11.7211 0.3530 -1.6850 33 1 3.7346 1.4426 -2.1343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:55 Heat of formation + Delta-G solvation = -98.077664 kcal Electronic energy + Delta-G solvation = -18486.597756 eV Core-core repulsion = 15443.990402 eV Total energy + Delta-G solvation = -3042.607354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28634 -37.48325 -36.93380 -36.17854 -35.71576 -35.12189 -32.84487 -30.47616 -28.27607 -27.87229 -24.35479 -23.52292 -22.00918 -20.94590 -19.51557 -18.84961 -18.23818 -17.18309 -16.85796 -16.58698 -16.10774 -15.80030 -15.54537 -15.27678 -15.08855 -14.47161 -14.04426 -13.94648 -13.38851 -13.13296 -13.01401 -12.92386 -12.58615 -12.47305 -12.45258 -12.34143 -12.31912 -12.20310 -12.01601 -11.45309 -11.23402 -10.91591 -10.40659 -10.23044 -9.29120 -8.74070 -7.43148 0.17451 0.32610 0.45409 1.31395 1.33486 1.49246 2.19075 2.57906 2.59575 2.92278 3.56186 3.63211 3.77339 3.98689 4.20870 4.23485 4.29889 4.35222 4.48033 4.61633 4.78943 4.81693 4.91032 4.98903 5.07092 5.19198 5.26858 5.28030 5.36563 5.53054 5.55621 5.79155 5.90030 6.08744 6.79007 7.19887 8.23079 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024929 B = 0.005528 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.935095 B = 5063.722263 C = 5487.805491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.073 4.073 4 C -0.011 4.011 5 C -0.199 4.199 6 C 0.123 3.877 7 N -0.556 5.556 8 C 0.361 3.639 9 N -1.040 6.040 10 S 2.714 3.286 11 O -1.037 7.037 12 O -1.016 7.016 13 C -1.011 5.011 14 H 0.107 0.893 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.992 3.008 18 H -0.252 1.252 19 H -0.260 1.260 20 H -0.255 1.255 21 C -0.209 4.209 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.434 0.566 32 H 0.299 0.701 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.898 -2.399 6.189 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.111 4.111 4 C -0.019 4.019 5 C -0.220 4.220 6 C -0.034 4.034 7 N -0.273 5.273 8 C 0.129 3.871 9 N -0.786 5.786 10 S 2.816 3.184 11 O -1.027 7.027 12 O -1.005 7.005 13 C -1.145 5.145 14 H 0.125 0.875 15 C -0.141 4.141 16 N -0.527 5.527 17 Si 0.811 3.189 18 H -0.176 1.176 19 H -0.184 1.184 20 H -0.178 1.178 21 C -0.234 4.234 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.188 0.812 30 H 0.189 0.811 31 H 0.271 0.729 32 H 0.109 0.891 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.127 -1.565 5.881 19.121 hybrid contribution -0.189 -0.958 -0.172 0.992 sum -18.316 -2.523 5.709 19.350 Atomic orbital electron populations 1.21755 0.94263 1.02108 1.02497 1.21495 0.96751 0.95212 1.02223 1.20723 0.87065 0.98419 1.04850 1.20496 0.97838 0.92045 0.91537 1.22186 0.94073 1.05612 1.00178 1.22910 0.93164 0.92985 0.94304 1.67209 1.42818 1.18364 0.98864 1.18337 0.89723 0.93699 0.85323 1.53570 1.27841 1.85623 1.11597 1.00241 0.69645 0.76296 0.72216 1.93343 1.79416 1.89841 1.40100 1.93323 1.80365 1.61110 1.65713 1.30482 1.00830 1.25677 1.57515 0.87488 1.25960 0.94815 1.02408 0.90877 1.69983 1.04285 1.37206 1.41272 0.85108 0.78592 0.76097 0.79148 1.17621 1.18380 1.17828 1.21665 0.90817 1.09420 1.01451 0.91777 0.92237 0.92491 0.92662 0.91864 0.88523 0.89505 0.81199 0.81111 0.72891 0.89123 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16 3 C -0.07 -1.07 5.39 29.85 0.16 -0.91 16 4 C -0.01 -0.25 5.17 -19.69 -0.10 -0.35 16 5 C -0.20 -4.75 9.81 22.37 0.22 -4.54 16 6 C 0.12 4.04 11.17 84.62 0.95 4.99 16 7 N -0.56 -24.45 8.33 -193.25 -1.61 -26.06 16 8 C 0.36 14.47 7.33 133.06 0.98 15.45 16 9 N -1.04 -44.81 5.85 -55.43 -0.32 -45.14 16 10 S 2.71 154.99 4.65 -56.49 -0.26 154.73 16 11 O -1.04 -63.82 18.02 -128.00 -2.31 -66.13 16 12 O -1.02 -64.57 16.89 -128.00 -2.16 -66.73 16 13 C -1.01 -58.92 9.33 67.74 0.63 -58.29 16 14 H 0.11 5.86 7.81 -2.91 -0.02 5.83 16 15 C 0.07 4.15 5.46 84.66 0.46 4.62 16 16 N -0.90 -55.14 13.19 21.45 0.28 -54.86 16 17 Si 0.99 43.29 29.54 68.60 2.03 45.32 16 18 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 21 C -0.21 -6.01 9.64 22.50 0.22 -5.80 16 22 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 23 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.10 1.07 8.10 -2.39 -0.02 1.05 16 28 H 0.09 1.11 8.10 -2.39 -0.02 1.09 16 29 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.17 4.76 8.06 -2.91 -0.02 4.74 16 31 H 0.43 14.91 8.82 -96.75 -0.85 14.05 16 32 H 0.30 16.46 8.31 -92.70 -0.77 15.69 16 33 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -83.70 302.95 0.32 -83.39 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.27 Total: 22.65 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 4.41 Total: -47.18 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -1.65 Total: -126.06 kcal Atomic # 8 Polarization: -128.39 SS G_CDS: -4.47 Total: -132.85 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 154.99 SS G_CDS: -0.26 Total: 154.73 kcal Total: -83.70 0.32 -83.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.692 kcal (2) G-P(sol) polarization free energy of solvation -83.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds