Wall clock time and date at job start Mon Mar 30 2020 01:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46959 * 2 1 4 4 C 1.50697 * 109.47601 * 120.00111 * 2 1 3 5 5 C 1.38275 * 120.38009 * 300.02552 * 4 2 1 6 6 N 1.31852 * 120.92642 * 179.97438 * 5 4 2 7 7 C 1.31815 * 121.79977 * 359.97438 * 6 5 4 8 8 C 1.38884 * 120.65971 * 359.97438 * 7 6 5 9 9 N 1.39708 * 120.49472 * 180.02562 * 8 7 6 10 10 S 1.65603 * 119.99996 * 255.21632 * 9 8 7 11 11 O 1.42093 * 106.40220 * 177.77503 * 10 9 8 12 12 O 1.42102 * 106.39871 * 310.69329 * 10 9 8 13 13 C 1.76194 * 107.21931 * 64.23180 * 10 9 8 14 14 H 1.08007 * 120.00118 * 5.17901 * 13 10 9 15 15 C 1.37885 * 120.00081 * 185.16970 * 13 10 9 16 16 N 1.31508 * 119.99879 * 180.02562 * 15 13 10 17 17 Si 1.86802 * 119.99755 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47090 * 89.99687 * 17 15 13 19 19 H 1.48503 * 109.46668 * 209.99721 * 17 15 13 20 20 H 1.48500 * 109.47124 * 329.99547 * 17 15 13 21 21 C 1.38489 * 120.37801 * 119.99735 * 4 2 1 22 22 H 1.08999 * 109.47720 * 59.99998 * 1 2 3 23 23 H 1.09009 * 109.47083 * 179.97438 * 1 2 3 24 24 H 1.09011 * 109.46992 * 299.99613 * 1 2 3 25 25 H 1.09005 * 109.46766 * 240.00778 * 2 1 3 26 26 H 1.08991 * 109.47363 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47573 * 300.00637 * 3 2 1 28 28 H 1.09002 * 109.47117 * 60.00097 * 3 2 1 29 29 H 1.07997 * 119.53568 * 359.97438 * 5 4 2 30 30 H 1.08008 * 119.66788 * 179.97438 * 7 6 5 31 31 H 0.96996 * 119.99923 * 75.20762 * 9 8 7 32 32 H 0.97004 * 119.99935 * 180.02562 * 16 15 13 33 33 H 1.08006 * 120.82335 * 359.75232 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7028 -0.2451 2.4901 6 7 2.1361 -0.8586 3.5738 7 6 2.8957 -1.9337 3.5067 8 6 3.2684 -2.4619 2.2774 9 7 4.0733 -3.6019 2.2102 10 16 5.6729 -3.4634 1.8047 11 8 6.2194 -4.7732 1.8745 12 8 5.7216 -2.6624 0.6320 13 6 6.4548 -2.5295 3.0779 14 1 5.8973 -2.2431 3.9576 15 6 7.7784 -2.1645 2.9514 16 7 8.3621 -1.4679 3.9020 17 14 8.7424 -2.6594 1.4299 18 1 8.6099 -1.6031 0.3946 19 1 10.1746 -2.8282 1.7845 20 1 8.2091 -3.9405 0.9010 21 6 2.8291 -1.8370 1.1123 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5137 -0.8901 26 1 3.1298 1.4426 -0.0005 27 1 1.6765 1.9565 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.0818 0.6330 2.5877 30 1 3.2317 -2.4087 4.4167 31 1 3.6951 -4.4744 2.4012 32 1 9.2932 -1.2108 3.8128 33 1 3.0984 -2.2251 0.1411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951973.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:48 Heat of formation + Delta-G solvation = -58.396868 kcal Electronic energy + Delta-G solvation = -18851.360666 eV Core-core repulsion = 15810.474000 eV Total energy + Delta-G solvation = -3040.886665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17907 -36.13460 -35.73430 -34.75223 -34.56236 -33.08021 -30.75169 -28.80400 -27.17340 -26.46763 -23.58558 -23.19933 -20.35874 -19.24955 -17.63137 -17.19798 -16.72696 -16.55041 -16.09796 -15.13978 -14.65856 -14.00581 -13.95636 -13.84025 -13.46234 -12.91204 -12.89220 -12.79760 -12.50255 -12.24369 -11.87684 -11.45338 -11.25809 -11.23198 -10.99425 -10.89586 -10.75261 -10.60043 -10.15774 -10.04320 -9.34303 -9.27252 -9.11319 -8.86188 -8.41778 -6.84700 -5.40097 1.22497 1.52447 1.98144 3.03772 3.12996 3.20314 3.89630 3.98721 4.10024 4.54315 4.61791 4.82423 4.85070 5.15423 5.16242 5.23522 5.23781 5.40657 5.49172 5.57293 5.76696 5.80156 5.86284 6.01420 6.07504 6.13433 6.24698 6.26774 6.46615 6.51428 6.94108 7.42992 7.56350 8.15966 8.21858 8.64840 10.27509 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.006426 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.763673 B = 4356.141638 C = 4437.461006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C -0.146 4.146 4 C -0.126 4.126 5 C 0.096 3.904 6 N -0.476 5.476 7 C 0.102 3.898 8 C 0.112 3.888 9 N -1.070 6.070 10 S 2.668 3.332 11 O -1.000 7.000 12 O -1.003 7.003 13 C -1.012 5.012 14 H 0.124 0.876 15 C 0.153 3.847 16 N -0.818 5.818 17 Si 0.815 3.185 18 H -0.245 1.245 19 H -0.257 1.257 20 H -0.233 1.233 21 C -0.065 4.065 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.415 0.585 32 H 0.282 0.718 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.374 2.429 -5.563 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 C -0.204 4.204 4 C -0.129 4.129 5 C -0.062 4.062 6 N -0.184 5.184 7 C -0.058 4.058 8 C 0.015 3.985 9 N -0.821 5.821 10 S 2.771 3.229 11 O -0.991 6.991 12 O -0.993 6.993 13 C -1.147 5.147 14 H 0.141 0.859 15 C -0.067 4.067 16 N -0.447 5.447 17 Si 0.636 3.364 18 H -0.169 1.169 19 H -0.181 1.181 20 H -0.155 1.155 21 C -0.094 4.094 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.169 0.831 30 H 0.178 0.822 31 H 0.251 0.749 32 H 0.092 0.908 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.977 2.599 -5.476 14.323 hybrid contribution 0.812 -0.504 -0.603 1.130 sum -12.166 2.094 -6.078 13.760 Atomic orbital electron populations 1.21864 0.94299 1.01951 1.01921 1.20063 0.95729 0.96230 0.95098 1.21878 1.01975 0.94720 1.01789 1.20754 0.99209 0.96419 0.96475 1.22530 0.97673 0.98612 0.87369 1.67686 1.10392 1.07841 1.32450 1.23162 0.93543 0.91814 0.97292 1.18217 0.96107 0.90456 0.93763 1.53288 1.28461 1.11685 1.88653 1.01742 0.70750 0.74677 0.75715 1.93484 1.75322 1.41579 1.88684 1.93398 1.84724 1.70879 1.50275 1.30315 1.07465 1.52960 1.23927 0.85856 1.24423 0.96106 0.90412 0.95764 1.69984 1.13259 1.29897 1.31578 0.87660 0.82554 0.82844 0.83352 1.16857 1.18077 1.15538 1.21930 0.93579 0.94675 0.99188 0.92327 0.92594 0.92362 0.90081 0.91989 0.92338 0.92365 0.83096 0.82241 0.74933 0.90791 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.01 37.16 0.33 -0.94 16 2 C -0.05 -0.58 3.11 -91.77 -0.29 -0.87 16 3 C -0.15 -1.55 9.01 37.16 0.33 -1.21 16 4 C -0.13 -1.81 4.78 -104.52 -0.50 -2.31 16 5 C 0.10 1.39 9.90 -17.53 -0.17 1.22 16 6 N -0.48 -8.04 10.35 -13.08 -0.14 -8.18 16 7 C 0.10 1.79 11.13 -17.32 -0.19 1.60 16 8 C 0.11 2.04 5.82 -83.63 -0.49 1.55 16 9 N -1.07 -20.17 5.73 32.49 0.19 -19.98 16 10 S 2.67 65.42 4.18 -107.50 -0.45 64.97 16 11 O -1.00 -26.30 16.58 -57.17 -0.95 -27.25 16 12 O -1.00 -25.94 15.50 -57.17 -0.89 -26.83 16 13 C -1.01 -28.01 10.21 30.60 0.31 -27.70 16 14 H 0.12 3.45 8.06 -52.48 -0.42 3.03 16 15 C 0.15 4.37 5.47 -17.82 -0.10 4.28 16 16 N -0.82 -23.56 13.96 55.43 0.77 -22.79 16 17 Si 0.82 20.80 26.32 -169.99 -4.47 16.33 16 18 H -0.24 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.26 -6.00 7.11 56.52 0.40 -5.59 16 20 H -0.23 -6.02 5.89 56.52 0.33 -5.68 16 21 C -0.07 -1.10 9.08 -39.09 -0.35 -1.46 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 24 H 0.06 0.48 7.41 -51.92 -0.38 0.10 16 25 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.57 7.41 -51.93 -0.38 0.18 16 29 H 0.15 1.73 7.12 -52.49 -0.37 1.36 16 30 H 0.16 2.59 8.06 -52.48 -0.42 2.17 16 31 H 0.41 6.38 8.95 -34.47 -0.31 6.07 16 32 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.14 2.30 7.96 -52.48 -0.42 1.88 16 LS Contribution 294.00 15.07 4.43 4.43 Total: -1.00 -32.71 294.00 -6.63 -39.35 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.02 Total: 5.81 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -1.11 Total: -25.85 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.82 Total: -50.95 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -1.83 Total: -54.08 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.47 Total: 16.33 kcal Atomic # 16 Polarization: 65.42 SS G_CDS: -0.45 Total: 64.97 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.71 -6.63 -39.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951973.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.050 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds