Wall clock time and date at job start Mon Mar 30 2020 01:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46959 * 2 1 4 4 C 1.50697 * 109.47601 * 120.00111 * 2 1 3 5 5 C 1.38275 * 120.38009 * 300.02552 * 4 2 1 6 6 N 1.31852 * 120.92642 * 179.97438 * 5 4 2 7 7 C 1.31815 * 121.79977 * 359.97438 * 6 5 4 8 8 C 1.38884 * 120.65971 * 359.97438 * 7 6 5 9 9 N 1.39708 * 120.49472 * 180.02562 * 8 7 6 10 10 S 1.65603 * 119.99996 * 255.21632 * 9 8 7 11 11 O 1.42093 * 106.40220 * 177.77503 * 10 9 8 12 12 O 1.42102 * 106.39871 * 310.69329 * 10 9 8 13 13 C 1.76194 * 107.21931 * 64.23180 * 10 9 8 14 14 H 1.08007 * 120.00118 * 5.17901 * 13 10 9 15 15 C 1.37885 * 120.00081 * 185.16970 * 13 10 9 16 16 N 1.31508 * 119.99879 * 180.02562 * 15 13 10 17 17 Si 1.86802 * 119.99755 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47090 * 89.99687 * 17 15 13 19 19 H 1.48503 * 109.46668 * 209.99721 * 17 15 13 20 20 H 1.48500 * 109.47124 * 329.99547 * 17 15 13 21 21 C 1.38489 * 120.37801 * 119.99735 * 4 2 1 22 22 H 1.08999 * 109.47720 * 59.99998 * 1 2 3 23 23 H 1.09009 * 109.47083 * 179.97438 * 1 2 3 24 24 H 1.09011 * 109.46992 * 299.99613 * 1 2 3 25 25 H 1.09005 * 109.46766 * 240.00778 * 2 1 3 26 26 H 1.08991 * 109.47363 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47573 * 300.00637 * 3 2 1 28 28 H 1.09002 * 109.47117 * 60.00097 * 3 2 1 29 29 H 1.07997 * 119.53568 * 359.97438 * 5 4 2 30 30 H 1.08008 * 119.66788 * 179.97438 * 7 6 5 31 31 H 0.96996 * 119.99923 * 75.20762 * 9 8 7 32 32 H 0.97004 * 119.99935 * 180.02562 * 16 15 13 33 33 H 1.08006 * 120.82335 * 359.75232 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7028 -0.2451 2.4901 6 7 2.1361 -0.8586 3.5738 7 6 2.8957 -1.9337 3.5067 8 6 3.2684 -2.4619 2.2774 9 7 4.0733 -3.6019 2.2102 10 16 5.6729 -3.4634 1.8047 11 8 6.2194 -4.7732 1.8745 12 8 5.7216 -2.6624 0.6320 13 6 6.4548 -2.5295 3.0779 14 1 5.8973 -2.2431 3.9576 15 6 7.7784 -2.1645 2.9514 16 7 8.3621 -1.4679 3.9020 17 14 8.7424 -2.6594 1.4299 18 1 8.6099 -1.6031 0.3946 19 1 10.1746 -2.8282 1.7845 20 1 8.2091 -3.9405 0.9010 21 6 2.8291 -1.8370 1.1123 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5137 -0.8901 26 1 3.1298 1.4426 -0.0005 27 1 1.6765 1.9565 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.0818 0.6330 2.5877 30 1 3.2317 -2.4087 4.4167 31 1 3.6951 -4.4744 2.4012 32 1 9.2932 -1.2108 3.8128 33 1 3.0984 -2.2251 0.1411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951973.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:47 Heat of formation + Delta-G solvation = -83.164646 kcal Electronic energy + Delta-G solvation = -18852.434677 eV Core-core repulsion = 15810.474000 eV Total energy + Delta-G solvation = -3041.960677 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43583 -37.81742 -37.18535 -36.61567 -36.09959 -35.22105 -31.95688 -30.12775 -28.60402 -27.91686 -24.73908 -24.50391 -21.58174 -21.06799 -19.57163 -18.82642 -18.41536 -17.86471 -17.47919 -17.03809 -16.08903 -15.54373 -15.48569 -15.02593 -15.00516 -14.81042 -14.10306 -13.96358 -13.70953 -13.56579 -13.47318 -13.07139 -12.92122 -12.80366 -12.65688 -12.21869 -12.05806 -11.98936 -11.95682 -11.52001 -11.38432 -11.10610 -10.60093 -10.23117 -9.74486 -8.99499 -7.57047 -0.26861 0.19271 0.33052 1.02783 1.11366 1.16603 1.84895 2.34505 2.38848 2.74075 3.17800 3.46758 3.74139 3.87562 3.91713 4.02047 4.11576 4.34024 4.35636 4.42684 4.69019 4.85349 4.88858 4.95480 5.05606 5.13962 5.20940 5.24630 5.34461 5.46029 5.52776 5.68111 5.98271 6.14301 6.49406 6.94033 8.18256 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.006426 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.763673 B = 4356.141638 C = 4437.461006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 C -0.146 4.146 4 C -0.118 4.118 5 C 0.100 3.900 6 N -0.490 5.490 7 C 0.088 3.912 8 C 0.086 3.914 9 N -1.052 6.052 10 S 2.694 3.306 11 O -1.020 7.020 12 O -1.016 7.016 13 C -1.035 5.035 14 H 0.107 0.893 15 C 0.109 3.891 16 N -0.850 5.850 17 Si 0.838 3.162 18 H -0.238 1.238 19 H -0.221 1.221 20 H -0.240 1.240 21 C -0.081 4.081 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.187 0.813 30 H 0.163 0.837 31 H 0.431 0.569 32 H 0.292 0.708 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.704 3.271 -6.782 16.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 C -0.204 4.204 4 C -0.120 4.120 5 C -0.058 4.058 6 N -0.198 5.198 7 C -0.071 4.071 8 C -0.011 4.011 9 N -0.808 5.808 10 S 2.795 3.205 11 O -1.010 7.010 12 O -1.006 7.006 13 C -1.168 5.168 14 H 0.125 0.875 15 C -0.109 4.109 16 N -0.480 5.480 17 Si 0.655 3.345 18 H -0.161 1.161 19 H -0.143 1.143 20 H -0.163 1.163 21 C -0.109 4.109 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.204 0.796 30 H 0.180 0.820 31 H 0.270 0.730 32 H 0.103 0.897 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.281 3.436 -6.672 16.133 hybrid contribution 1.067 -0.691 -0.203 1.287 sum -13.214 2.745 -6.875 15.146 Atomic orbital electron populations 1.21841 0.92028 1.02294 1.03388 1.20177 0.97503 0.96166 0.93332 1.21895 1.00473 0.94482 1.03506 1.21139 0.97626 0.95297 0.97967 1.23140 0.96926 0.98939 0.86803 1.67731 1.10674 1.07760 1.33639 1.23241 0.94194 0.92391 0.97295 1.18389 0.97202 0.90805 0.94685 1.52642 1.26666 1.13116 1.88420 1.00820 0.71597 0.73439 0.74609 1.93448 1.76933 1.41920 1.88726 1.93372 1.85670 1.71270 1.50283 1.30843 1.07911 1.53269 1.24788 0.87483 1.25165 0.97147 0.90601 0.97938 1.70010 1.14297 1.30833 1.32882 0.87306 0.83720 0.82381 0.81065 1.16108 1.14329 1.16276 1.22129 0.94385 0.95643 0.98786 0.90411 0.92852 0.91403 0.90117 0.94345 0.90071 0.91321 0.79610 0.81995 0.73016 0.89731 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.01 71.98 0.65 -1.33 16 2 C -0.05 -1.04 3.11 -11.54 -0.04 -1.08 16 3 C -0.15 -2.70 9.01 71.98 0.65 -2.05 16 4 C -0.12 -3.19 4.78 -19.80 -0.09 -3.28 16 5 C 0.10 2.68 9.90 84.70 0.84 3.52 16 6 N -0.49 -16.07 10.35 -195.29 -2.02 -18.09 16 7 C 0.09 3.10 11.13 84.85 0.94 4.04 16 8 C 0.09 3.12 5.82 38.30 0.22 3.34 16 9 N -1.05 -39.64 5.73 -51.12 -0.29 -39.93 16 10 S 2.69 132.12 4.18 -56.49 -0.24 131.88 16 11 O -1.02 -53.43 16.58 -128.00 -2.12 -55.55 16 12 O -1.02 -52.25 15.50 -128.00 -1.98 -54.23 16 13 C -1.04 -58.24 10.21 67.74 0.69 -57.55 16 14 H 0.11 6.19 8.06 -2.91 -0.02 6.16 16 15 C 0.11 6.25 5.47 84.66 0.46 6.71 16 16 N -0.85 -49.35 13.96 21.45 0.30 -49.05 16 17 Si 0.84 41.54 26.32 68.60 1.81 43.34 16 18 H -0.24 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.22 -9.63 7.11 99.48 0.71 -8.93 16 20 H -0.24 -12.13 5.89 99.48 0.59 -11.54 16 21 C -0.08 -2.67 9.08 22.59 0.21 -2.47 16 22 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.07 0.85 7.41 -2.38 -0.02 0.83 16 25 H 0.08 1.62 7.93 -2.38 -0.02 1.60 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.07 1.11 7.41 -2.39 -0.02 1.09 16 29 H 0.19 3.59 7.12 -2.91 -0.02 3.57 16 30 H 0.16 5.39 8.06 -2.91 -0.02 5.37 16 31 H 0.43 13.12 8.95 -96.75 -0.87 12.25 16 32 H 0.29 15.23 8.31 -92.71 -0.77 14.45 16 33 H 0.14 4.56 7.96 -2.91 -0.02 4.54 16 Total: -1.00 -69.61 294.00 0.12 -69.50 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.14 Total: 22.28 kcal Atomic # 6 Polarization: -54.67 SS G_CDS: 4.53 Total: -50.14 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -2.02 Total: -107.07 kcal Atomic # 8 Polarization: -105.68 SS G_CDS: -4.11 Total: -109.78 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.81 Total: 43.34 kcal Atomic # 16 Polarization: 132.12 SS G_CDS: -0.24 Total: 131.88 kcal Total: -69.61 0.12 -69.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951973.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.669 kcal (2) G-P(sol) polarization free energy of solvation -69.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds