Wall clock time and date at job start Mon Mar 30 2020 01:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47160 * 2 1 4 4 N 1.31817 * 119.67016 * 269.98351 * 3 2 1 5 5 C 1.31857 * 121.79708 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.92748 * 359.97438 * 5 4 3 7 7 C 1.38493 * 119.24696 * 359.76333 * 6 5 4 8 8 C 1.50696 * 120.82667 * 180.25655 * 7 6 5 9 9 C 1.38886 * 119.67260 * 90.00156 * 3 2 1 10 10 N 1.39707 * 120.49187 * 359.97438 * 9 3 2 11 11 S 1.65598 * 120.00060 * 232.80073 * 10 9 3 12 12 O 1.42101 * 106.40212 * 263.77645 * 11 10 9 13 13 O 1.42098 * 106.40637 * 130.85201 * 11 10 9 14 14 C 1.76200 * 107.21848 * 17.31373 * 11 10 9 15 15 H 1.08000 * 119.99964 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00224 * 179.97438 * 14 11 10 17 17 N 1.31511 * 119.99981 * 0.02562 * 16 14 11 18 18 Si 1.86808 * 119.99955 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.46897 * 60.00223 * 18 16 14 20 20 H 1.48502 * 109.46992 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47204 * 300.00154 * 18 16 14 22 22 H 1.09003 * 109.47281 * 180.02562 * 1 2 3 23 23 H 1.09012 * 109.47083 * 299.99831 * 1 2 3 24 24 H 1.08996 * 109.47848 * 59.99724 * 1 2 3 25 25 H 1.09004 * 109.46749 * 240.00685 * 2 1 3 26 26 H 1.08996 * 109.47848 * 120.00276 * 2 1 3 27 27 H 1.08007 * 119.53199 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.37789 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.47223 * 233.34567 * 8 7 6 30 30 H 1.08997 * 109.47103 * 353.34576 * 8 7 6 31 31 H 1.08998 * 109.46752 * 113.34363 * 8 7 6 32 32 H 0.97005 * 119.99949 * 52.79737 * 10 9 3 33 33 H 0.97005 * 120.00096 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2501 2.0359 -1.1453 5 6 2.6899 3.2781 -1.1943 6 6 2.9410 3.9892 -0.0354 7 6 2.7208 3.3842 1.1908 8 6 2.9772 4.1282 2.4761 9 6 2.2615 2.0691 1.2067 10 7 2.0294 1.4139 2.4186 11 16 1.0658 2.1159 3.5680 12 8 1.9384 2.7791 4.4725 13 8 0.1354 1.1214 3.9737 14 6 0.1300 3.3751 2.7660 15 1 0.2587 3.5528 1.7085 16 6 -0.7674 4.1328 3.4881 17 7 -0.9245 3.9162 4.7757 18 14 -1.7590 5.4683 2.6378 19 1 -2.5847 4.8628 1.5624 20 1 -2.6444 6.1332 3.6274 21 1 -0.8358 6.4708 2.0481 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.8562 3.7465 -2.1531 28 1 3.3006 5.0063 -0.0858 29 1 3.6405 3.5400 3.1103 30 1 3.4437 5.0878 2.2536 31 1 2.0326 4.2948 2.9939 32 1 2.4326 0.5478 2.5868 33 1 -1.5555 4.4496 5.2839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952184.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:08 Heat of formation + Delta-G solvation = -64.286438 kcal Electronic energy + Delta-G solvation = -19778.117042 eV Core-core repulsion = 16736.974985 eV Total energy + Delta-G solvation = -3041.142056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.16413 -35.59745 -35.11000 -34.24777 -34.09928 -33.27045 -31.38491 -28.68792 -27.11402 -26.19406 -23.88307 -22.14648 -20.34328 -19.40084 -17.64637 -17.19778 -16.34996 -16.01894 -15.44470 -14.97219 -14.14974 -14.07178 -13.86146 -13.62461 -13.46741 -12.78433 -12.30678 -12.13307 -12.07758 -11.73952 -11.50171 -11.36859 -11.20123 -10.98472 -10.86096 -10.69093 -10.67277 -10.47301 -10.26391 -10.01989 -9.33033 -9.03106 -8.94128 -8.76902 -7.92711 -6.84308 -5.43992 1.43909 1.67151 2.15413 3.02476 3.07284 3.13340 3.94606 4.11009 4.45386 4.52856 4.66151 5.00143 5.18723 5.32096 5.48989 5.59019 5.60558 5.69669 5.73869 6.01765 6.16914 6.18197 6.26463 6.42190 6.51001 6.52119 6.65272 6.68641 6.74300 7.03256 7.14064 7.26614 7.59872 7.82373 8.36746 8.74733 10.10797 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017728 B = 0.009838 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.080540 B = 2845.483657 C = 3141.230925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.066 4.066 3 C 0.113 3.887 4 N -0.480 5.480 5 C 0.080 3.920 6 C -0.166 4.166 7 C -0.041 4.041 8 C -0.156 4.156 9 C 0.128 3.872 10 N -1.069 6.069 11 S 2.700 3.300 12 O -0.996 6.996 13 O -0.999 6.999 14 C -1.009 5.009 15 H 0.106 0.894 16 C 0.137 3.863 17 N -0.841 5.841 18 Si 0.919 3.081 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.261 1.261 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.151 0.849 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.408 0.592 33 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.417 -1.085 -8.552 10.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 C -0.028 4.028 4 N -0.189 5.189 5 C -0.077 4.077 6 C -0.187 4.187 7 C -0.051 4.051 8 C -0.212 4.212 9 C 0.028 3.972 10 N -0.817 5.817 11 S 2.802 3.198 12 O -0.986 6.986 13 O -0.989 6.989 14 C -1.142 5.142 15 H 0.124 0.876 16 C -0.082 4.082 17 N -0.470 5.470 18 Si 0.743 3.257 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.186 1.186 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.168 0.832 28 H 0.151 0.849 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.242 0.758 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.078 -1.632 -8.157 9.747 hybrid contribution -0.332 1.182 -0.096 1.231 sum 4.746 -0.450 -8.253 9.532 Atomic orbital electron populations 1.21723 0.93942 1.01871 1.03072 1.20333 0.96890 0.90625 1.02577 1.21305 0.96700 0.97399 0.87410 1.67385 1.12739 1.10423 1.28400 1.22528 0.96889 0.90280 0.98038 1.21881 1.03442 1.01181 0.92177 1.20599 0.93619 0.93809 0.97109 1.21700 1.06900 0.99117 0.93459 1.17915 0.99836 0.92682 0.86731 1.53787 1.66711 1.32306 1.28867 1.01041 0.72724 0.74362 0.71710 1.93414 1.67594 1.75114 1.62438 1.93387 1.61889 1.62631 1.80991 1.30187 1.38973 1.37103 1.07981 0.87556 1.24672 0.93597 0.95985 0.93961 1.69878 1.32389 1.37860 1.06853 0.86196 0.79583 0.80164 0.79790 1.18738 1.20026 1.18585 0.92266 0.91412 0.92504 0.90506 0.90695 0.83176 0.84923 0.89912 0.91986 0.85533 0.75763 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.89 37.16 0.37 -1.97 16 2 C -0.07 -1.00 5.98 -27.88 -0.17 -1.17 16 3 C 0.11 1.99 6.06 -82.36 -0.50 1.49 16 4 N -0.48 -8.15 10.27 -9.31 -0.10 -8.24 16 5 C 0.08 1.21 11.18 -17.53 -0.20 1.01 16 6 C -0.17 -2.60 9.76 -39.48 -0.39 -2.98 16 7 C -0.04 -0.75 4.60 -104.13 -0.48 -1.23 16 8 C -0.16 -3.03 7.93 36.00 0.29 -2.74 16 9 C 0.13 2.43 5.17 -83.63 -0.43 2.00 16 10 N -1.07 -21.18 4.96 32.49 0.16 -21.02 16 11 S 2.70 68.30 4.55 -107.50 -0.49 67.81 16 12 O -1.00 -26.83 14.86 -57.17 -0.85 -27.68 16 13 O -1.00 -28.28 18.02 -57.17 -1.03 -29.31 16 14 C -1.01 -26.15 6.31 30.60 0.19 -25.96 16 15 H 0.11 2.61 6.22 -52.49 -0.33 2.29 16 16 C 0.14 3.61 5.46 -17.82 -0.10 3.51 16 17 N -0.84 -23.44 13.19 55.43 0.73 -22.71 16 18 Si 0.92 19.89 29.54 -169.99 -5.02 14.86 16 19 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.04 6.89 -51.93 -0.36 0.68 16 27 H 0.15 1.71 8.06 -52.48 -0.42 1.29 16 28 H 0.13 1.67 8.02 -52.49 -0.42 1.25 16 29 H 0.08 1.62 7.32 -51.93 -0.38 1.24 16 30 H 0.06 1.00 7.96 -51.93 -0.41 0.59 16 31 H 0.13 2.91 3.86 -51.93 -0.20 2.71 16 32 H 0.41 6.74 8.06 -34.47 -0.28 6.46 16 33 H 0.29 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 286.30 15.07 4.31 4.31 Total: -1.00 -32.41 286.30 -7.31 -39.72 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -3.63 Total: 10.27 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -1.41 Total: -28.03 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.80 Total: -51.96 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -1.88 Total: -56.99 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 68.30 SS G_CDS: -0.49 Total: 67.81 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.41 -7.31 -39.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952184.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.565 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds