Wall clock time and date at job start Mon Mar 30 2020 01:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47160 * 2 1 4 4 N 1.31817 * 119.67016 * 269.98351 * 3 2 1 5 5 C 1.31857 * 121.79708 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.92748 * 359.97438 * 5 4 3 7 7 C 1.38493 * 119.24696 * 359.76333 * 6 5 4 8 8 C 1.50696 * 120.82667 * 180.25655 * 7 6 5 9 9 C 1.38886 * 119.67260 * 90.00156 * 3 2 1 10 10 N 1.39707 * 120.49187 * 359.97438 * 9 3 2 11 11 S 1.65598 * 120.00060 * 232.80073 * 10 9 3 12 12 O 1.42101 * 106.40212 * 263.77645 * 11 10 9 13 13 O 1.42098 * 106.40637 * 130.85201 * 11 10 9 14 14 C 1.76200 * 107.21848 * 17.31373 * 11 10 9 15 15 H 1.08000 * 119.99964 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00224 * 179.97438 * 14 11 10 17 17 N 1.31511 * 119.99981 * 0.02562 * 16 14 11 18 18 Si 1.86808 * 119.99955 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.46897 * 60.00223 * 18 16 14 20 20 H 1.48502 * 109.46992 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47204 * 300.00154 * 18 16 14 22 22 H 1.09003 * 109.47281 * 180.02562 * 1 2 3 23 23 H 1.09012 * 109.47083 * 299.99831 * 1 2 3 24 24 H 1.08996 * 109.47848 * 59.99724 * 1 2 3 25 25 H 1.09004 * 109.46749 * 240.00685 * 2 1 3 26 26 H 1.08996 * 109.47848 * 120.00276 * 2 1 3 27 27 H 1.08007 * 119.53199 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.37789 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.47223 * 233.34567 * 8 7 6 30 30 H 1.08997 * 109.47103 * 353.34576 * 8 7 6 31 31 H 1.08998 * 109.46752 * 113.34363 * 8 7 6 32 32 H 0.97005 * 119.99949 * 52.79737 * 10 9 3 33 33 H 0.97005 * 120.00096 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2501 2.0359 -1.1453 5 6 2.6899 3.2781 -1.1943 6 6 2.9410 3.9892 -0.0354 7 6 2.7208 3.3842 1.1908 8 6 2.9772 4.1282 2.4761 9 6 2.2615 2.0691 1.2067 10 7 2.0294 1.4139 2.4186 11 16 1.0658 2.1159 3.5680 12 8 1.9384 2.7791 4.4725 13 8 0.1354 1.1214 3.9737 14 6 0.1300 3.3751 2.7660 15 1 0.2587 3.5528 1.7085 16 6 -0.7674 4.1328 3.4881 17 7 -0.9245 3.9162 4.7757 18 14 -1.7590 5.4683 2.6378 19 1 -2.5847 4.8628 1.5624 20 1 -2.6444 6.1332 3.6274 21 1 -0.8358 6.4708 2.0481 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.8562 3.7465 -2.1531 28 1 3.3006 5.0063 -0.0858 29 1 3.6405 3.5400 3.1103 30 1 3.4437 5.0878 2.2536 31 1 2.0326 4.2948 2.9939 32 1 2.4326 0.5478 2.5868 33 1 -1.5555 4.4496 5.2839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952184.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:08 Heat of formation + Delta-G solvation = -88.801473 kcal Electronic energy + Delta-G solvation = -19779.180093 eV Core-core repulsion = 16736.974985 eV Total energy + Delta-G solvation = -3042.205108 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.48658 -37.58723 -36.60913 -36.24311 -35.57051 -35.20443 -32.78282 -30.02177 -28.68350 -28.06175 -25.17411 -23.48752 -21.68341 -21.27604 -19.40662 -18.80174 -18.22760 -17.46446 -16.97443 -16.60534 -16.11048 -15.74095 -15.33333 -14.91570 -14.73794 -14.14129 -14.02221 -13.81550 -13.50353 -13.32375 -13.09471 -12.97872 -12.82789 -12.78753 -12.55205 -12.35306 -12.30302 -12.05727 -11.91397 -11.67712 -11.22925 -10.99478 -10.32957 -10.10303 -9.34793 -8.80590 -7.47487 -0.01995 0.29665 0.44717 1.32946 1.33934 1.46839 2.16123 2.56223 2.74430 2.84584 3.40240 3.44902 3.72305 3.91638 4.16114 4.24971 4.34891 4.45820 4.48658 4.64838 4.77094 4.87168 4.94126 4.95328 5.03277 5.07318 5.22061 5.24929 5.37094 5.39031 5.54976 5.78826 5.89371 6.15631 6.74079 7.08738 8.17440 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017728 B = 0.009838 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.080540 B = 2845.483657 C = 3141.230925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C 0.109 3.891 4 N -0.488 5.488 5 C 0.089 3.911 6 C -0.160 4.160 7 C -0.060 4.060 8 C -0.154 4.154 9 C 0.097 3.903 10 N -1.056 6.056 11 S 2.706 3.294 12 O -1.023 7.023 13 O -1.040 7.040 14 C -1.011 5.011 15 H 0.115 0.885 16 C 0.082 3.918 17 N -0.887 5.887 18 Si 0.980 3.020 19 H -0.258 1.258 20 H -0.263 1.263 21 H -0.244 1.244 22 H 0.082 0.918 23 H 0.031 0.969 24 H 0.058 0.942 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.194 0.806 28 H 0.167 0.833 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.420 0.580 33 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.822 0.063 -11.450 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.032 4.032 4 N -0.198 5.198 5 C -0.069 4.069 6 C -0.180 4.180 7 C -0.071 4.071 8 C -0.211 4.211 9 C -0.002 4.002 10 N -0.808 5.808 11 S 2.810 3.190 12 O -1.012 7.012 13 O -1.030 7.030 14 C -1.145 5.145 15 H 0.133 0.867 16 C -0.132 4.132 17 N -0.518 5.518 18 Si 0.798 3.202 19 H -0.182 1.182 20 H -0.187 1.187 21 H -0.167 1.167 22 H 0.101 0.899 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.118 0.882 26 H 0.100 0.900 27 H 0.211 0.789 28 H 0.185 0.815 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.257 0.743 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.502 -0.509 -11.045 12.350 hybrid contribution -0.353 0.809 0.701 1.127 sum 5.149 0.300 -10.344 11.559 Atomic orbital electron populations 1.21702 0.94490 1.02918 1.01278 1.20443 0.96323 0.89873 1.04054 1.21572 0.96275 0.98322 0.87040 1.67507 1.13116 1.11472 1.27712 1.23276 0.94506 0.89452 0.99673 1.22265 1.02179 1.02627 0.90954 1.20741 0.94725 0.93798 0.97846 1.21551 1.04979 1.00768 0.93785 1.18180 1.01982 0.93506 0.86482 1.53076 1.66189 1.32823 1.28755 1.00492 0.72538 0.73951 0.72067 1.93377 1.68007 1.75602 1.64259 1.93329 1.63556 1.63727 1.82417 1.30299 1.38881 1.37013 1.08340 0.86657 1.25777 0.94602 0.98324 0.94474 1.69964 1.33743 1.39552 1.08572 0.85296 0.78423 0.77499 0.78974 1.18208 1.18750 1.16716 0.89915 0.95014 0.92307 0.88231 0.90019 0.78911 0.81512 0.91231 0.88946 0.89086 0.74273 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 9.89 71.98 0.71 -3.75 16 2 C -0.07 -1.99 5.98 29.85 0.18 -1.81 16 3 C 0.11 3.64 6.06 42.72 0.26 3.90 16 4 N -0.49 -15.07 10.27 -183.36 -1.88 -16.95 16 5 C 0.09 2.29 11.18 84.70 0.95 3.24 16 6 C -0.16 -4.42 9.76 22.34 0.22 -4.21 16 7 C -0.06 -2.15 4.60 -19.55 -0.09 -2.24 16 8 C -0.15 -5.94 7.93 71.23 0.56 -5.38 16 9 C 0.10 3.62 5.17 38.30 0.20 3.82 16 10 N -1.06 -42.62 4.96 -51.12 -0.25 -42.88 16 11 S 2.71 141.59 4.55 -56.49 -0.26 141.34 16 12 O -1.02 -57.41 14.86 -128.00 -1.90 -59.31 16 13 O -1.04 -61.39 18.02 -128.00 -2.31 -63.70 16 14 C -1.01 -53.13 6.31 67.73 0.43 -52.70 16 15 H 0.12 5.67 6.22 -2.91 -0.02 5.65 16 16 C 0.08 4.38 5.46 84.65 0.46 4.84 16 17 N -0.89 -50.73 13.19 21.45 0.28 -50.44 16 18 Si 0.98 39.94 29.54 68.60 2.03 41.96 16 19 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.24 -9.17 7.11 99.48 0.71 -8.46 16 22 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.10 2.40 8.14 -2.39 -0.02 2.39 16 26 H 0.08 2.20 6.89 -2.39 -0.02 2.18 16 27 H 0.19 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.17 3.38 8.02 -2.91 -0.02 3.36 16 29 H 0.07 2.79 7.32 -2.39 -0.02 2.77 16 30 H 0.09 2.84 7.96 -2.39 -0.02 2.82 16 31 H 0.09 4.24 3.86 -2.39 -0.01 4.23 16 32 H 0.42 14.24 8.06 -96.74 -0.78 13.46 16 33 H 0.30 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -71.85 286.30 -0.05 -71.90 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.37 Total: 32.37 kcal Atomic # 6 Polarization: -58.16 SS G_CDS: 3.88 Total: -54.28 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -1.85 Total: -110.27 kcal Atomic # 8 Polarization: -118.80 SS G_CDS: -4.21 Total: -123.01 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 16 Polarization: 141.59 SS G_CDS: -0.26 Total: 141.34 kcal Total: -71.85 -0.05 -71.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952184.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.901 kcal (2) G-P(sol) polarization free energy of solvation -71.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds