Wall clock time and date at job start Mon Mar 30 2020 02:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.52997 * 109.47398 * 274.72686 * 3 2 1 5 5 C 1.50702 * 109.47467 * 179.97438 * 4 3 2 6 6 C 1.38673 * 120.41916 * 269.72388 * 5 4 3 7 7 C 1.38630 * 118.42178 * 179.78165 * 6 5 4 8 8 C 1.38226 * 119.15907 * 0.50984 * 7 6 5 9 9 N 1.31860 * 120.76291 * 359.72597 * 8 7 6 10 10 C 1.31883 * 121.72568 * 0.02562 * 9 8 7 11 11 S 1.65608 * 119.99583 * 179.72681 * 2 1 3 12 12 O 1.42100 * 106.40059 * 203.54152 * 11 2 1 13 13 O 1.42096 * 106.40050 * 336.46185 * 11 2 1 14 14 C 1.76202 * 107.21643 * 90.00209 * 11 2 1 15 15 H 1.07996 * 120.00069 * 359.97438 * 14 11 2 16 16 C 1.37877 * 119.99696 * 180.02562 * 14 11 2 17 17 N 1.31516 * 120.00169 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00014 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47184 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47353 * 119.99622 * 18 16 14 21 21 H 1.48498 * 109.47424 * 239.99862 * 18 16 14 22 22 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 23 23 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 24 24 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 25 25 H 1.09004 * 109.46868 * 34.72321 * 3 2 1 26 26 H 1.09004 * 109.47439 * 154.72444 * 3 2 1 27 27 H 1.08995 * 109.47096 * 299.99700 * 4 3 2 28 28 H 1.08997 * 109.47293 * 59.99772 * 4 3 2 29 29 H 1.08003 * 120.78880 * 0.02562 * 6 5 4 30 30 H 1.07994 * 120.41991 * 180.21813 * 7 6 5 31 31 H 1.07996 * 119.61881 * 179.75061 * 8 7 6 32 32 H 1.08004 * 119.61703 * 180.02562 * 10 9 8 33 33 H 0.96999 * 119.99975 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3496 1.7698 -1.4375 5 6 3.1027 3.0751 -1.4375 6 6 2.4208 4.2791 -1.3449 7 6 3.1552 5.4549 -1.3439 8 6 4.5321 5.3891 -1.4455 9 7 5.1468 4.2261 -1.5369 10 6 4.4809 3.0877 -1.5359 11 16 2.2929 -1.4342 0.0068 12 8 3.5758 -1.1544 0.5500 13 8 1.4111 -2.4039 0.5559 14 6 2.5537 -1.8939 -1.6741 15 1 2.1866 -1.2626 -2.4697 16 6 3.2254 -3.0601 -1.9735 17 7 3.6720 -3.8292 -1.0046 18 14 3.5013 -3.5479 -3.7554 19 1 2.9056 -2.5211 -4.6477 20 1 4.9588 -3.6494 -4.0209 21 1 2.8583 -4.8611 -4.0145 22 1 -0.3634 0.0049 1.0276 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3634 -0.8924 -0.5096 25 1 1.6477 2.0056 0.5854 26 1 3.1840 1.1186 0.4388 27 1 2.8994 1.0328 -2.0229 28 1 1.3632 1.9198 -1.8763 29 1 1.3435 4.3000 -1.2712 30 1 2.6574 6.4104 -1.2696 31 1 5.1112 6.3006 -1.4495 32 1 5.0191 2.1545 -1.6120 33 1 4.1449 -4.6494 -1.2153 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961723.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:16 Heat of formation + Delta-G solvation = -60.781794 kcal Electronic energy + Delta-G solvation = -18644.981772 eV Core-core repulsion = 15603.991688 eV Total energy + Delta-G solvation = -3040.990084 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.11112 -36.29048 -35.29373 -33.97380 -33.32237 -33.00265 -31.85859 -28.74229 -26.15580 -25.64021 -23.51238 -23.11835 -21.18066 -18.64759 -17.38022 -17.01232 -16.45669 -16.12731 -15.50723 -15.04708 -14.83848 -14.28018 -13.83450 -13.53877 -13.22701 -13.07708 -13.03133 -12.92511 -12.03803 -12.01566 -11.88325 -11.50875 -11.25195 -11.24544 -10.79597 -10.59191 -10.30519 -10.19912 -10.08776 -9.78147 -9.37916 -9.27118 -9.09686 -8.82275 -8.19438 -6.71093 -5.33584 1.14999 1.30858 2.24656 3.04449 3.13204 3.19537 3.85044 4.03934 4.42288 4.57137 4.62816 4.81285 4.96786 5.02874 5.10249 5.35137 5.52790 5.58032 5.66749 5.72381 5.80412 5.91753 6.05158 6.09705 6.11304 6.23122 6.32191 6.40868 6.53783 6.73550 6.79495 7.31052 7.55006 7.95778 8.03266 8.87730 10.22557 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.006126 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.057862 B = 4569.542390 C = 5276.983795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -1.017 6.017 3 C 0.130 3.870 4 C -0.105 4.105 5 C -0.120 4.120 6 C -0.076 4.076 7 C -0.175 4.175 8 C 0.085 3.915 9 N -0.484 5.484 10 C 0.105 3.895 11 S 2.712 3.288 12 O -1.003 7.003 13 O -1.004 7.004 14 C -1.018 5.018 15 H 0.103 0.897 16 C 0.133 3.867 17 N -0.845 5.845 18 Si 0.918 3.082 19 H -0.262 1.262 20 H -0.271 1.271 21 H -0.271 1.271 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.151 0.849 32 H 0.162 0.838 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 14.684 -2.448 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.852 5.852 3 C 0.004 3.996 4 C -0.145 4.145 5 C -0.123 4.123 6 C -0.103 4.103 7 C -0.195 4.195 8 C -0.072 4.072 9 N -0.192 5.192 10 C -0.052 4.052 11 S 2.812 3.188 12 O -0.993 6.993 13 O -0.994 6.994 14 C -1.152 5.152 15 H 0.121 0.879 16 C -0.085 4.085 17 N -0.475 5.475 18 Si 0.742 3.258 19 H -0.186 1.186 20 H -0.196 1.196 21 H -0.196 1.196 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.168 0.832 32 H 0.179 0.821 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.718 14.064 -1.617 14.415 hybrid contribution -0.927 -0.084 -1.538 1.798 sum -3.645 13.980 -3.155 14.788 Atomic orbital electron populations 1.21246 0.80120 1.02233 1.00829 1.57936 1.14190 1.21944 1.91086 1.21097 0.98006 0.85841 0.94682 1.21152 1.00396 0.93282 0.99649 1.20958 0.95492 0.96051 0.99812 1.21515 1.00471 0.91839 0.96428 1.22090 0.95705 0.99077 1.02645 1.22723 0.92193 0.96053 0.96268 1.67720 1.41140 0.98563 1.11808 1.22923 0.91249 0.96644 0.94412 1.00644 0.71794 0.69703 0.76653 1.93348 1.40910 1.83988 1.81051 1.93357 1.67249 1.57945 1.80857 1.30628 1.50110 1.16897 1.17550 0.87883 1.24745 0.90153 0.93442 1.00127 1.69904 1.31003 1.12890 1.33663 0.86165 0.78774 0.79038 0.81805 1.18607 1.19561 1.19626 0.93733 0.92452 0.90952 0.91540 0.88993 0.88969 0.90496 0.84991 0.85140 0.83182 0.82097 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 10.31 59.84 0.62 2.26 16 2 N -1.02 -19.91 3.18 -121.77 -0.39 -20.29 16 3 C 0.13 2.15 5.64 -4.05 -0.02 2.13 16 4 C -0.11 -1.53 5.69 -27.88 -0.16 -1.69 16 5 C -0.12 -1.62 5.15 -104.48 -0.54 -2.16 16 6 C -0.08 -0.85 9.86 -39.28 -0.39 -1.24 16 7 C -0.18 -1.77 10.11 -39.44 -0.40 -2.17 16 8 C 0.08 0.98 11.18 -17.54 -0.20 0.78 16 9 N -0.48 -7.04 10.36 -13.25 -0.14 -7.18 16 10 C 0.10 1.54 10.86 -17.55 -0.19 1.35 16 11 S 2.71 70.92 4.94 -107.50 -0.53 70.38 16 12 O -1.00 -28.67 16.57 -57.17 -0.95 -29.62 16 13 O -1.00 -29.11 17.09 -57.17 -0.98 -30.09 16 14 C -1.02 -27.21 9.75 30.60 0.30 -26.91 16 15 H 0.10 2.50 7.81 -52.49 -0.41 2.09 16 16 C 0.13 3.65 5.46 -17.82 -0.10 3.56 16 17 N -0.84 -24.59 13.19 55.43 0.73 -23.86 16 18 Si 0.92 20.26 29.54 -169.99 -5.02 15.24 16 19 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 24 H 0.07 1.22 7.79 -51.93 -0.40 0.82 16 25 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 26 H 0.09 1.68 6.91 -51.93 -0.36 1.32 16 27 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 28 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 29 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.16 2.35 8.06 -52.48 -0.42 1.93 16 33 H 0.29 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 303.77 15.07 4.58 4.58 Total: -1.00 -34.83 303.77 -7.87 -42.70 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.10 Total: 2.24 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -1.07 Total: -24.09 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.21 Total: -51.33 kcal Atomic # 8 Polarization: -57.79 SS G_CDS: -1.92 Total: -59.71 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 70.92 SS G_CDS: -0.53 Total: 70.38 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.83 -7.87 -42.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961723.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.085 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds