Wall clock time and date at job start Mon Mar 30 2020 02:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.52997 * 109.47398 * 274.72686 * 3 2 1 5 5 C 1.50702 * 109.47467 * 179.97438 * 4 3 2 6 6 C 1.38673 * 120.41916 * 269.72388 * 5 4 3 7 7 C 1.38630 * 118.42178 * 179.78165 * 6 5 4 8 8 C 1.38226 * 119.15907 * 0.50984 * 7 6 5 9 9 N 1.31860 * 120.76291 * 359.72597 * 8 7 6 10 10 C 1.31883 * 121.72568 * 0.02562 * 9 8 7 11 11 S 1.65608 * 119.99583 * 179.72681 * 2 1 3 12 12 O 1.42100 * 106.40059 * 203.54152 * 11 2 1 13 13 O 1.42096 * 106.40050 * 336.46185 * 11 2 1 14 14 C 1.76202 * 107.21643 * 90.00209 * 11 2 1 15 15 H 1.07996 * 120.00069 * 359.97438 * 14 11 2 16 16 C 1.37877 * 119.99696 * 180.02562 * 14 11 2 17 17 N 1.31516 * 120.00169 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00014 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47184 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47353 * 119.99622 * 18 16 14 21 21 H 1.48498 * 109.47424 * 239.99862 * 18 16 14 22 22 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 23 23 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 24 24 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 25 25 H 1.09004 * 109.46868 * 34.72321 * 3 2 1 26 26 H 1.09004 * 109.47439 * 154.72444 * 3 2 1 27 27 H 1.08995 * 109.47096 * 299.99700 * 4 3 2 28 28 H 1.08997 * 109.47293 * 59.99772 * 4 3 2 29 29 H 1.08003 * 120.78880 * 0.02562 * 6 5 4 30 30 H 1.07994 * 120.41991 * 180.21813 * 7 6 5 31 31 H 1.07996 * 119.61881 * 179.75061 * 8 7 6 32 32 H 1.08004 * 119.61703 * 180.02562 * 10 9 8 33 33 H 0.96999 * 119.99975 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3496 1.7698 -1.4375 5 6 3.1027 3.0751 -1.4375 6 6 2.4208 4.2791 -1.3449 7 6 3.1552 5.4549 -1.3439 8 6 4.5321 5.3891 -1.4455 9 7 5.1468 4.2261 -1.5369 10 6 4.4809 3.0877 -1.5359 11 16 2.2929 -1.4342 0.0068 12 8 3.5758 -1.1544 0.5500 13 8 1.4111 -2.4039 0.5559 14 6 2.5537 -1.8939 -1.6741 15 1 2.1866 -1.2626 -2.4697 16 6 3.2254 -3.0601 -1.9735 17 7 3.6720 -3.8292 -1.0046 18 14 3.5013 -3.5479 -3.7554 19 1 2.9056 -2.5211 -4.6477 20 1 4.9588 -3.6494 -4.0209 21 1 2.8583 -4.8611 -4.0145 22 1 -0.3634 0.0049 1.0276 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3634 -0.8924 -0.5096 25 1 1.6477 2.0056 0.5854 26 1 3.1840 1.1186 0.4388 27 1 2.8994 1.0328 -2.0229 28 1 1.3632 1.9198 -1.8763 29 1 1.3435 4.3000 -1.2712 30 1 2.6574 6.4104 -1.2696 31 1 5.1112 6.3006 -1.4495 32 1 5.0191 2.1545 -1.6120 33 1 4.1449 -4.6494 -1.2153 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961723.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:15 Heat of formation + Delta-G solvation = -87.159652 kcal Electronic energy + Delta-G solvation = -18646.125601 eV Core-core repulsion = 15603.991688 eV Total energy + Delta-G solvation = -3042.133913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05740 -37.70532 -37.40229 -36.13644 -35.18617 -34.35041 -32.77489 -29.89183 -28.25936 -26.91209 -24.47196 -24.33783 -22.31593 -20.62392 -19.16295 -18.29164 -17.91243 -17.32430 -17.01207 -16.87352 -16.15864 -15.82494 -15.20549 -14.97801 -14.62609 -14.42927 -14.10702 -13.95349 -13.84639 -13.47163 -13.20918 -13.15225 -13.03769 -12.56163 -12.50823 -12.46198 -12.28986 -12.07941 -11.65809 -11.26635 -10.98244 -10.68384 -10.33356 -10.07169 -9.61152 -8.73902 -7.46962 0.19640 0.32960 0.42168 1.32393 1.33833 1.50770 2.19983 2.58323 2.80455 2.93254 3.60040 3.77503 3.90304 3.93510 4.12542 4.15502 4.23062 4.27253 4.37206 4.55672 4.61233 4.72280 4.79533 4.89669 4.95214 5.00290 5.19149 5.23012 5.26728 5.35321 5.46573 5.87132 5.92588 6.00014 6.79379 7.09125 8.21479 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.006126 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.057862 B = 4569.542390 C = 5276.983795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.012 6.012 3 C 0.126 3.874 4 C -0.096 4.096 5 C -0.130 4.130 6 C -0.071 4.071 7 C -0.162 4.162 8 C 0.076 3.924 9 N -0.516 5.516 10 C 0.075 3.925 11 S 2.712 3.288 12 O -1.042 7.042 13 O -1.043 7.043 14 C -1.032 5.032 15 H 0.122 0.878 16 C 0.070 3.930 17 N -0.896 5.896 18 Si 0.987 3.013 19 H -0.245 1.245 20 H -0.262 1.262 21 H -0.259 1.259 22 H 0.055 0.945 23 H 0.106 0.894 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.166 0.834 30 H 0.172 0.828 31 H 0.179 0.821 32 H 0.140 0.860 33 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 17.469 -4.011 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.850 5.850 3 C 0.000 4.000 4 C -0.136 4.136 5 C -0.133 4.133 6 C -0.097 4.097 7 C -0.182 4.182 8 C -0.081 4.081 9 N -0.225 5.225 10 C -0.081 4.081 11 S 2.814 3.186 12 O -1.032 7.032 13 O -1.033 7.033 14 C -1.166 5.166 15 H 0.140 0.860 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.805 3.195 19 H -0.168 1.168 20 H -0.186 1.186 21 H -0.184 1.184 22 H 0.074 0.926 23 H 0.125 0.875 24 H 0.077 0.923 25 H 0.124 0.876 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.183 0.817 30 H 0.189 0.811 31 H 0.196 0.804 32 H 0.158 0.842 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.555 16.852 -3.163 17.740 hybrid contribution -0.393 -0.773 -0.985 1.312 sum -4.947 16.078 -4.148 17.326 Atomic orbital electron populations 1.21580 0.77541 1.03972 1.02271 1.57390 1.15675 1.20869 1.91068 1.21329 0.96901 0.85035 0.96714 1.21008 1.01562 0.93251 0.97783 1.20827 0.94745 0.96568 1.01170 1.21898 1.02108 0.90859 0.94820 1.22520 0.94982 1.00494 1.00160 1.23325 0.93676 0.95863 0.95255 1.67668 1.42307 0.99427 1.13127 1.22776 0.92244 0.96427 0.96607 1.00205 0.71179 0.70654 0.76589 1.93289 1.43225 1.84914 1.81759 1.93294 1.67856 1.60595 1.81573 1.30961 1.49922 1.17354 1.18333 0.85999 1.25999 0.89528 0.93380 1.05345 1.70003 1.32434 1.13921 1.36416 0.85149 0.79294 0.79451 0.75602 1.16778 1.18626 1.18379 0.92590 0.87548 0.92320 0.87575 0.91899 0.91819 0.87759 0.81698 0.81100 0.80437 0.84240 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.73 10.31 127.77 1.32 4.05 16 2 N -1.01 -39.00 3.18 -539.15 -1.72 -40.72 16 3 C 0.13 4.02 5.64 86.38 0.49 4.51 16 4 C -0.10 -2.68 5.69 29.85 0.17 -2.51 16 5 C -0.13 -3.32 5.15 -19.77 -0.10 -3.42 16 6 C -0.07 -1.29 9.86 22.47 0.22 -1.07 16 7 C -0.16 -2.58 10.11 22.36 0.23 -2.35 16 8 C 0.08 1.56 11.18 84.69 0.95 2.50 16 9 N -0.52 -14.90 10.36 -195.84 -2.03 -16.93 16 10 C 0.08 2.27 10.86 84.67 0.92 3.19 16 11 S 2.71 146.26 4.94 -56.49 -0.28 145.98 16 12 O -1.04 -62.63 16.57 -128.00 -2.12 -64.75 16 13 O -1.04 -62.63 17.09 -128.00 -2.19 -64.81 16 14 C -1.03 -56.04 9.75 67.73 0.66 -55.38 16 15 H 0.12 5.90 7.81 -2.91 -0.02 5.88 16 16 C 0.07 3.89 5.46 84.65 0.46 4.35 16 17 N -0.90 -53.87 13.19 21.45 0.28 -53.58 16 18 Si 0.99 41.27 29.54 68.60 2.03 43.30 16 19 H -0.24 -9.45 7.11 99.48 0.71 -8.74 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.11 2.15 8.07 -2.39 -0.02 2.13 16 24 H 0.06 1.92 7.79 -2.38 -0.02 1.90 16 25 H 0.11 2.56 8.11 -2.39 -0.02 2.54 16 26 H 0.06 2.38 6.91 -2.39 -0.02 2.36 16 27 H 0.06 2.12 8.09 -2.39 -0.02 2.10 16 28 H 0.10 2.28 8.09 -2.39 -0.02 2.26 16 29 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 31 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.30 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -79.94 303.77 0.39 -79.55 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.10 Total: 18.10 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 5.31 Total: -46.13 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -3.46 Total: -111.23 kcal Atomic # 8 Polarization: -125.26 SS G_CDS: -4.31 Total: -129.57 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 146.26 SS G_CDS: -0.28 Total: 145.98 kcal Total: -79.94 0.39 -79.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961723.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.612 kcal (2) G-P(sol) polarization free energy of solvation -79.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds