Wall clock time and date at job start Mon Mar 30 2020 01:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31879 * 119.61741 * 2 1 4 4 C 1.31857 * 121.72569 * 179.97438 * 3 2 1 5 5 C 1.38224 * 120.76155 * 359.97438 * 4 3 2 6 6 C 1.38630 * 119.16347 * 0.02562 * 5 4 3 7 7 C 1.38181 * 119.61274 * 180.23600 * 2 1 3 8 8 C 1.50699 * 120.42260 * 0.02562 * 7 2 1 9 9 N 1.46498 * 109.47178 * 80.27378 * 8 7 2 10 10 C 1.46498 * 120.00115 * 275.00397 * 9 8 7 11 11 S 1.65597 * 119.99886 * 95.00031 * 9 8 7 12 12 O 1.42100 * 106.40345 * 203.54105 * 11 9 8 13 13 O 1.42098 * 106.40596 * 336.45954 * 11 9 8 14 14 C 1.76201 * 107.21904 * 90.00153 * 11 9 8 15 15 H 1.08006 * 119.99760 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00205 * 179.97438 * 14 11 9 17 17 N 1.31519 * 119.99645 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00290 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46991 * 59.99848 * 18 16 14 20 20 H 1.48498 * 109.47187 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47201 * 300.00600 * 18 16 14 22 22 H 1.09002 * 109.47409 * 89.99775 * 1 2 3 23 23 H 1.08999 * 109.47462 * 209.99888 * 1 2 3 24 24 H 1.08998 * 109.46992 * 330.00348 * 1 2 3 25 25 H 1.07997 * 119.62057 * 179.97438 * 4 3 2 26 26 H 1.07998 * 120.41893 * 179.97438 * 5 4 3 27 27 H 1.08002 * 120.78834 * 179.97438 * 6 5 4 28 28 H 1.09006 * 109.46828 * 200.27690 * 8 7 2 29 29 H 1.09008 * 109.46872 * 320.27383 * 8 7 2 30 30 H 1.08996 * 109.47844 * 89.99472 * 10 9 8 31 31 H 1.09001 * 109.47161 * 209.99991 * 10 9 8 32 32 H 1.09010 * 109.47034 * 329.99618 * 10 9 8 33 33 H 0.97005 * 119.99617 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 0.0005 5 6 4.2266 0.0340 0.0016 6 6 3.5765 -1.1904 0.0016 7 6 2.1898 -1.2013 -0.0049 8 6 1.4371 -2.5069 -0.0109 9 7 0.9916 -2.8075 -1.3737 10 6 -0.2637 -2.2429 -1.8753 11 16 1.9070 -3.7854 -2.3473 12 8 1.5607 -3.4567 -3.6857 13 8 3.2361 -3.7167 -1.8493 14 6 1.3621 -5.4403 -2.0845 15 1 0.5644 -5.6415 -1.3847 16 6 1.9540 -6.4785 -2.7722 17 7 2.9258 -6.2335 -3.6240 18 14 1.3769 -8.2330 -2.4931 19 1 -0.0615 -8.3429 -2.8458 20 1 2.1674 -9.1558 -3.3467 21 1 1.5653 -8.5948 -1.0652 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 3.9753 2.1528 0.0001 26 1 5.3056 0.0802 0.0016 27 1 4.1367 -2.1137 0.0020 28 1 2.0907 -3.3046 0.3421 29 1 0.5706 -2.4297 0.6460 30 1 -0.0664 -1.2805 -2.3474 31 1 -0.7017 -2.9229 -2.6059 32 1 -0.9573 -2.1052 -1.0457 33 1 3.3424 -6.9639 -4.1075 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192965280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:36 Heat of formation + Delta-G solvation = -81.176866 kcal Electronic energy + Delta-G solvation = -19190.283864 eV Core-core repulsion = 16148.409384 eV Total energy + Delta-G solvation = -3041.874480 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29555 -37.47948 -37.35903 -36.09386 -35.15863 -33.89534 -33.22558 -29.62548 -28.25013 -27.54388 -25.78625 -23.45105 -22.48563 -20.77238 -19.10018 -18.33210 -17.48316 -17.36710 -17.07567 -16.71922 -16.33716 -15.71626 -15.51114 -14.79519 -14.62463 -14.19380 -13.96208 -13.94615 -13.72088 -13.35020 -13.27618 -12.99437 -12.94344 -12.77899 -12.47287 -12.42867 -12.32668 -12.17507 -11.94551 -11.23370 -10.97591 -10.66373 -10.47935 -9.91414 -9.65857 -8.74086 -7.48391 0.05581 0.31469 0.45205 1.34446 1.36174 1.49269 2.20812 2.58097 2.72974 3.02014 3.45770 3.75129 3.88013 3.88917 4.00737 4.10906 4.20592 4.35946 4.57972 4.60220 4.65307 4.74493 4.78701 4.82869 4.90016 4.98536 5.08252 5.27834 5.29608 5.31041 5.46739 5.83232 5.90746 5.95520 6.78394 7.03847 8.20443 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.032600 B = 0.006238 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.685471 B = 4487.548788 C = 4809.480597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.129 3.871 3 N -0.510 5.510 4 C 0.095 3.905 5 C -0.187 4.187 6 C -0.073 4.073 7 C -0.172 4.172 8 C 0.167 3.833 9 N -1.004 6.004 10 C 0.086 3.914 11 S 2.715 3.285 12 O -1.047 7.047 13 O -1.030 7.030 14 C -1.040 5.040 15 H 0.121 0.879 16 C 0.069 3.931 17 N -0.896 5.896 18 Si 0.989 3.011 19 H -0.250 1.250 20 H -0.266 1.266 21 H -0.248 1.248 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.186 0.814 26 H 0.157 0.843 27 H 0.130 0.870 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 8.222 9.972 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.008 4.008 3 N -0.220 5.220 4 C -0.062 4.062 5 C -0.207 4.207 6 C -0.100 4.100 7 C -0.176 4.176 8 C 0.041 3.959 9 N -0.842 5.842 10 C -0.058 4.058 11 S 2.817 3.183 12 O -1.037 7.037 13 O -1.020 7.020 14 C -1.174 5.174 15 H 0.139 0.861 16 C -0.143 4.143 17 N -0.527 5.527 18 Si 0.807 3.193 19 H -0.174 1.174 20 H -0.190 1.190 21 H -0.172 1.172 22 H 0.106 0.894 23 H 0.116 0.884 24 H 0.103 0.897 25 H 0.203 0.797 26 H 0.175 0.825 27 H 0.147 0.853 28 H 0.099 0.901 29 H 0.143 0.857 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.131 0.869 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.463 9.293 9.254 13.853 hybrid contribution 0.544 -2.014 -0.136 2.091 sum -3.919 7.279 9.119 12.308 Atomic orbital electron populations 1.21143 0.87010 1.04651 1.04156 1.21553 0.98439 0.87257 0.93586 1.67585 1.10891 1.29365 1.14183 1.23244 0.89303 0.99509 0.94142 1.22420 1.02834 0.92763 1.02668 1.21946 0.94736 0.99627 0.93701 1.21332 0.94968 0.97728 1.03590 1.20212 0.99653 0.92693 0.83309 1.57480 1.36250 1.64988 1.25444 1.21833 0.84962 0.98220 1.00801 1.00184 0.72104 0.74808 0.71203 1.93292 1.84909 1.86470 1.39043 1.93279 1.38800 1.88838 1.81071 1.30983 1.33084 1.16225 1.37078 0.86067 1.26031 0.91318 1.06913 0.90075 1.70000 1.21912 1.37808 1.23005 0.85178 0.79801 0.74188 0.80134 1.17363 1.19020 1.17190 0.89400 0.88435 0.89693 0.79704 0.82511 0.85253 0.90141 0.85653 0.93302 0.92246 0.86905 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 8.19 71.24 0.58 -1.84 16 2 C 0.13 3.82 6.78 42.54 0.29 4.10 16 3 N -0.51 -15.23 10.27 -183.89 -1.89 -17.12 16 4 C 0.10 2.50 11.18 84.69 0.95 3.44 16 5 C -0.19 -5.24 10.11 22.36 0.23 -5.01 16 6 C -0.07 -2.51 9.52 22.47 0.21 -2.29 16 7 C -0.17 -5.65 5.48 -19.77 -0.11 -5.76 16 8 C 0.17 5.35 5.08 85.63 0.44 5.79 16 9 N -1.00 -38.76 3.17 -543.21 -1.72 -40.49 16 10 C 0.09 2.67 8.48 127.77 1.08 3.75 16 11 S 2.72 144.62 4.88 -56.49 -0.28 144.34 16 12 O -1.05 -63.21 17.09 -128.00 -2.19 -65.40 16 13 O -1.03 -59.11 16.25 -128.00 -2.08 -61.20 16 14 C -1.04 -56.27 9.75 67.73 0.66 -55.61 16 15 H 0.12 5.83 7.81 -2.91 -0.02 5.80 16 16 C 0.07 3.82 5.46 84.65 0.46 4.28 16 17 N -0.90 -53.40 13.19 21.45 0.28 -53.12 16 18 Si 0.99 40.63 29.54 68.60 2.03 42.65 16 19 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 20 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 22 H 0.09 1.86 5.86 -2.39 -0.01 1.85 16 23 H 0.10 1.66 5.31 -2.39 -0.01 1.65 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.19 3.38 8.06 -2.91 -0.02 3.36 16 26 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 27 H 0.13 4.78 7.62 -2.91 -0.02 4.76 16 28 H 0.08 2.76 7.50 -2.38 -0.02 2.74 16 29 H 0.13 2.84 6.23 -2.38 -0.01 2.83 16 30 H 0.05 1.47 6.83 -2.39 -0.02 1.45 16 31 H 0.06 1.99 7.79 -2.39 -0.02 1.97 16 32 H 0.11 2.32 6.49 -2.38 -0.02 2.30 16 33 H 0.30 16.02 8.31 -92.70 -0.77 15.25 16 Total: -1.00 -77.95 289.77 0.08 -77.87 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 1.13 Total: 21.60 kcal Atomic # 6 Polarization: -53.94 SS G_CDS: 4.79 Total: -49.15 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -3.33 Total: -110.72 kcal Atomic # 8 Polarization: -122.33 SS G_CDS: -4.27 Total: -126.59 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 144.62 SS G_CDS: -0.28 Total: 144.34 kcal Total: -77.95 0.08 -77.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192965280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.303 kcal (2) G-P(sol) polarization free energy of solvation -77.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds