Wall clock time and date at job start Mon Mar 30 2020 01:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38671 * 120.78849 * 2 1 4 4 C 1.38186 * 119.16623 * 180.02562 * 3 2 1 5 5 N 1.31890 * 120.76221 * 359.74640 * 4 3 2 6 6 C 1.31853 * 121.72261 * 0.52636 * 5 4 3 7 7 C 1.50706 * 119.61493 * 179.75043 * 6 5 4 8 8 H 1.09002 * 109.46678 * 214.72394 * 7 6 5 9 9 C 1.52997 * 109.46751 * 94.72891 * 7 6 5 10 10 N 1.46497 * 109.47001 * 334.72649 * 7 6 5 11 11 S 1.65608 * 119.99652 * 214.99877 * 10 7 6 12 12 O 1.42104 * 106.39724 * 178.54027 * 11 10 7 13 13 O 1.42097 * 106.40199 * 311.45938 * 11 10 7 14 14 C 1.76195 * 107.21632 * 65.00196 * 11 10 7 15 15 H 1.08001 * 120.00866 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99874 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00033 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00076 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47359 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47176 * 119.99883 * 18 16 14 21 21 H 1.48507 * 109.47256 * 239.99728 * 18 16 14 22 22 C 1.38226 * 120.76842 * 359.47358 * 6 5 4 23 23 H 1.08996 * 109.46703 * 269.97129 * 1 2 3 24 24 H 1.08999 * 109.47331 * 29.97610 * 1 2 3 25 25 H 1.09007 * 109.46984 * 149.97597 * 1 2 3 26 26 H 1.07999 * 120.41739 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.61726 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47124 * 299.99229 * 9 7 6 29 29 H 1.08998 * 109.47495 * 59.99929 * 9 7 6 30 30 H 1.09002 * 109.46924 * 180.02562 * 9 7 6 31 31 H 0.96997 * 120.00126 * 34.99800 * 10 7 6 32 32 H 0.96997 * 119.99891 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.42595 * 180.23523 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1522 -0.0005 5 7 4.2403 0.0002 0.0040 6 6 3.5984 -1.1515 -0.0012 7 6 4.3802 -2.4399 -0.0014 8 1 3.8487 -3.1872 -0.5905 9 6 4.5377 -2.9410 1.4356 10 7 5.7035 -2.2080 -0.5856 11 16 6.4251 -3.3885 -1.4957 12 8 7.6636 -2.8517 -1.9400 13 8 6.3236 -4.5914 -0.7461 14 6 5.4356 -3.6146 -2.9359 15 1 4.5426 -3.0235 -3.0760 16 6 5.8012 -4.5463 -3.8842 17 7 6.8889 -5.2658 -3.7140 18 14 4.7518 -4.7866 -5.4108 19 1 3.5906 -3.8623 -5.3638 20 1 5.5645 -4.5000 -6.6203 21 1 4.2659 -6.1890 -5.4618 22 6 2.2167 -1.1909 -0.0007 23 1 -0.3632 -0.0005 1.0276 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6966 2.1377 0.0004 27 1 4.1582 2.0755 -0.0001 28 1 5.0692 -2.1936 2.0248 29 1 3.5531 -3.1135 1.8703 30 1 5.1035 -3.8726 1.4356 31 1 6.1569 -1.3631 -0.4394 32 1 7.1463 -5.9210 -4.3814 33 1 1.6965 -2.1374 -0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192987374.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:26 Heat of formation + Delta-G solvation = -67.686156 kcal Electronic energy + Delta-G solvation = -18689.868040 eV Core-core repulsion = 15648.578561 eV Total energy + Delta-G solvation = -3041.289479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27564 -35.92307 -35.02333 -33.86736 -33.68772 -33.04379 -30.93479 -28.74590 -27.77851 -26.09291 -23.91028 -22.79893 -20.36751 -18.98863 -17.44544 -16.60254 -16.37644 -15.98937 -15.50128 -14.81144 -14.54667 -14.39779 -13.97300 -13.40926 -13.32137 -13.19861 -12.73606 -12.64915 -12.45326 -12.00489 -11.90698 -11.59738 -11.21513 -11.16810 -10.94880 -10.56933 -10.25317 -10.17421 -10.08887 -9.45196 -9.36841 -9.22365 -9.02843 -8.83413 -8.42541 -6.66321 -5.27476 1.18942 1.31802 2.43200 3.06983 3.15418 3.22720 3.85293 4.09339 4.33610 4.58534 4.67818 4.69701 4.89303 5.09487 5.19566 5.30401 5.35981 5.48151 5.60958 5.63843 5.77246 5.82559 5.87459 5.96420 6.11431 6.23899 6.30737 6.56175 6.65867 6.80005 6.98683 7.36272 7.98765 8.07467 8.22501 8.93130 10.27786 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020384 B = 0.006452 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.295887 B = 4338.967293 C = 5023.864769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.043 4.043 3 C -0.187 4.187 4 C 0.105 3.895 5 N -0.476 5.476 6 C 0.143 3.857 7 C 0.208 3.792 8 H 0.104 0.896 9 C -0.164 4.164 10 N -1.123 6.123 11 S 2.715 3.285 12 O -1.007 7.007 13 O -1.006 7.006 14 C -1.021 5.021 15 H 0.101 0.899 16 C 0.133 3.867 17 N -0.845 5.845 18 Si 0.918 3.082 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.271 1.271 22 C -0.170 4.170 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.130 0.870 27 H 0.154 0.846 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.411 0.589 32 H 0.290 0.710 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.790 9.786 7.157 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.051 4.051 3 C -0.207 4.207 4 C -0.052 4.052 5 N -0.186 5.186 6 C 0.003 3.997 7 C 0.099 3.901 8 H 0.121 0.879 9 C -0.223 4.223 10 N -0.877 5.877 11 S 2.815 3.185 12 O -0.997 6.997 13 O -0.996 6.996 14 C -1.154 5.154 15 H 0.119 0.881 16 C -0.084 4.084 17 N -0.475 5.475 18 Si 0.742 3.258 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.196 1.196 22 C -0.190 4.190 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.148 0.852 27 H 0.171 0.829 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.244 0.756 32 H 0.100 0.900 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.024 9.015 7.332 16.017 hybrid contribution -1.805 0.514 -1.218 2.238 sum -12.829 9.529 6.114 17.111 Atomic orbital electron populations 1.20811 0.90418 1.03282 1.02653 1.20277 0.96587 0.92991 0.95253 1.21965 0.95740 0.98399 1.04586 1.22735 0.91672 0.96087 0.94697 1.67326 1.41259 0.97905 1.12094 1.21580 0.91037 0.94214 0.92828 1.19446 0.83752 0.91341 0.95610 0.87872 1.22310 1.02058 1.02826 0.95125 1.55934 1.27739 1.34322 1.69741 1.00406 0.73241 0.70976 0.73914 1.93372 1.44373 1.79522 1.82431 1.93354 1.87442 1.45402 1.73429 1.30623 1.26391 1.31947 1.26462 0.88104 1.24731 0.93730 0.91510 0.98464 1.69908 1.21554 1.20028 1.35972 0.86172 0.80338 0.78771 0.80508 1.18702 1.19620 1.19595 1.21834 0.94687 0.99006 1.03486 0.90691 0.91213 0.90934 0.85225 0.82878 0.92362 0.92226 0.89873 0.75588 0.89992 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.06 36.00 0.36 -0.55 16 2 C -0.04 -0.49 5.92 -104.32 -0.62 -1.11 16 3 C -0.19 -2.05 9.82 -39.44 -0.39 -2.44 16 4 C 0.11 1.34 11.18 -17.55 -0.20 1.15 16 5 N -0.48 -7.67 9.15 -9.47 -0.09 -7.75 16 6 C 0.14 2.29 5.89 -82.58 -0.49 1.81 16 7 C 0.21 3.76 3.02 -69.08 -0.21 3.55 16 8 H 0.10 1.87 7.82 -51.93 -0.41 1.46 16 9 C -0.16 -2.60 9.50 37.16 0.35 -2.25 16 10 N -1.12 -23.84 5.41 -5.88 -0.03 -23.87 16 11 S 2.72 73.47 4.93 -107.50 -0.53 72.94 16 12 O -1.01 -30.45 18.02 -57.17 -1.03 -31.48 16 13 O -1.01 -29.14 17.28 -57.17 -0.99 -30.13 16 14 C -1.02 -28.49 9.58 30.60 0.29 -28.20 16 15 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16 16 C 0.13 3.77 5.46 -17.82 -0.10 3.67 16 17 N -0.84 -25.11 13.19 55.43 0.73 -24.38 16 18 Si 0.92 20.80 29.54 -169.99 -5.02 15.78 16 19 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 C -0.17 -2.26 9.47 -39.44 -0.37 -2.63 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 25 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 26 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 27 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.47 7.64 -51.93 -0.40 1.07 16 31 H 0.41 8.24 7.97 -34.48 -0.27 7.97 16 32 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 303.09 15.07 4.57 4.57 Total: -1.00 -36.02 303.09 -7.75 -43.77 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.00 Total: 7.55 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -1.36 Total: -27.00 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.61 Total: -56.00 kcal Atomic # 8 Polarization: -59.59 SS G_CDS: -2.02 Total: -61.61 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 73.47 SS G_CDS: -0.53 Total: 72.94 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.02 -7.75 -43.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987374.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.913 kcal (2) G-P(sol) polarization free energy of solvation -36.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds