Wall clock time and date at job start Mon Mar 30 2020 01:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38671 * 120.78849 * 2 1 4 4 C 1.38186 * 119.16623 * 180.02562 * 3 2 1 5 5 N 1.31890 * 120.76221 * 359.74640 * 4 3 2 6 6 C 1.31853 * 121.72261 * 0.52636 * 5 4 3 7 7 C 1.50706 * 119.61493 * 179.75043 * 6 5 4 8 8 H 1.09002 * 109.46678 * 214.72394 * 7 6 5 9 9 C 1.52997 * 109.46751 * 94.72891 * 7 6 5 10 10 N 1.46497 * 109.47001 * 334.72649 * 7 6 5 11 11 S 1.65608 * 119.99652 * 214.99877 * 10 7 6 12 12 O 1.42104 * 106.39724 * 178.54027 * 11 10 7 13 13 O 1.42097 * 106.40199 * 311.45938 * 11 10 7 14 14 C 1.76195 * 107.21632 * 65.00196 * 11 10 7 15 15 H 1.08001 * 120.00866 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99874 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00033 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00076 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47359 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47176 * 119.99883 * 18 16 14 21 21 H 1.48507 * 109.47256 * 239.99728 * 18 16 14 22 22 C 1.38226 * 120.76842 * 359.47358 * 6 5 4 23 23 H 1.08996 * 109.46703 * 269.97129 * 1 2 3 24 24 H 1.08999 * 109.47331 * 29.97610 * 1 2 3 25 25 H 1.09007 * 109.46984 * 149.97597 * 1 2 3 26 26 H 1.07999 * 120.41739 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.61726 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47124 * 299.99229 * 9 7 6 29 29 H 1.08998 * 109.47495 * 59.99929 * 9 7 6 30 30 H 1.09002 * 109.46924 * 180.02562 * 9 7 6 31 31 H 0.96997 * 120.00126 * 34.99800 * 10 7 6 32 32 H 0.96997 * 119.99891 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.42595 * 180.23523 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1522 -0.0005 5 7 4.2403 0.0002 0.0040 6 6 3.5984 -1.1515 -0.0012 7 6 4.3802 -2.4399 -0.0014 8 1 3.8487 -3.1872 -0.5905 9 6 4.5377 -2.9410 1.4356 10 7 5.7035 -2.2080 -0.5856 11 16 6.4251 -3.3885 -1.4957 12 8 7.6636 -2.8517 -1.9400 13 8 6.3236 -4.5914 -0.7461 14 6 5.4356 -3.6146 -2.9359 15 1 4.5426 -3.0235 -3.0760 16 6 5.8012 -4.5463 -3.8842 17 7 6.8889 -5.2658 -3.7140 18 14 4.7518 -4.7866 -5.4108 19 1 3.5906 -3.8623 -5.3638 20 1 5.5645 -4.5000 -6.6203 21 1 4.2659 -6.1890 -5.4618 22 6 2.2167 -1.1909 -0.0007 23 1 -0.3632 -0.0005 1.0276 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6966 2.1377 0.0004 27 1 4.1582 2.0755 -0.0001 28 1 5.0692 -2.1936 2.0248 29 1 3.5531 -3.1135 1.8703 30 1 5.1035 -3.8726 1.4356 31 1 6.1569 -1.3631 -0.4394 32 1 7.1463 -5.9210 -4.3814 33 1 1.6965 -2.1374 -0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192987374.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:25 Heat of formation + Delta-G solvation = -95.961481 kcal Electronic energy + Delta-G solvation = -18691.094150 eV Core-core repulsion = 15648.578561 eV Total energy + Delta-G solvation = -3042.515589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28799 -37.56163 -37.01501 -36.12153 -35.18888 -34.61554 -32.19097 -30.04580 -28.58500 -28.27025 -25.05944 -23.79747 -21.55462 -21.05555 -19.32276 -18.39537 -17.76206 -17.27279 -16.90307 -16.48505 -15.92636 -15.89450 -15.41339 -15.25659 -14.56633 -14.31088 -13.99576 -13.63454 -13.54732 -13.35887 -13.32080 -13.10387 -13.03567 -12.63025 -12.48038 -12.46637 -12.37835 -12.29569 -11.87170 -11.26981 -11.03991 -10.47877 -10.34760 -10.20351 -9.83022 -8.76004 -7.49079 0.18169 0.38506 0.40398 1.32109 1.32820 1.50582 2.20165 2.57052 2.83280 2.96351 3.29274 3.69520 3.79119 3.91191 4.15573 4.22335 4.25031 4.34816 4.47390 4.57846 4.69971 4.74748 4.85029 4.88040 4.93036 5.03950 5.19822 5.25303 5.30658 5.40388 5.46174 5.86293 5.88851 6.40728 6.77220 7.14956 8.21030 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020384 B = 0.006452 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.295887 B = 4338.967293 C = 5023.864769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.043 4.043 3 C -0.176 4.176 4 C 0.090 3.910 5 N -0.512 5.512 6 C 0.116 3.884 7 C 0.198 3.802 8 H 0.096 0.904 9 C -0.159 4.159 10 N -1.111 6.111 11 S 2.720 3.280 12 O -1.049 7.049 13 O -1.035 7.035 14 C -1.039 5.039 15 H 0.115 0.885 16 C 0.070 3.930 17 N -0.893 5.893 18 Si 0.990 3.010 19 H -0.249 1.249 20 H -0.260 1.260 21 H -0.254 1.254 22 C -0.177 4.177 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.166 0.834 27 H 0.176 0.824 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.416 0.584 32 H 0.299 0.701 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.005 11.253 6.674 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.067 4.067 5 N -0.223 5.223 6 C -0.022 4.022 7 C 0.089 3.911 8 H 0.114 0.886 9 C -0.218 4.218 10 N -0.869 5.869 11 S 2.821 3.179 12 O -1.039 7.039 13 O -1.025 7.025 14 C -1.172 5.172 15 H 0.133 0.867 16 C -0.143 4.143 17 N -0.524 5.524 18 Si 0.808 3.192 19 H -0.172 1.172 20 H -0.185 1.185 21 H -0.178 1.178 22 C -0.197 4.197 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.183 0.817 27 H 0.194 0.806 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.251 0.749 32 H 0.110 0.890 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.233 10.486 6.881 18.970 hybrid contribution -0.854 0.173 -0.977 1.309 sum -15.086 10.659 5.904 19.393 Atomic orbital electron populations 1.20890 0.87657 1.04358 1.03977 1.20726 0.98503 0.92255 0.93670 1.22372 0.95065 0.99900 1.02210 1.23222 0.93081 0.95810 0.94568 1.67205 1.42715 0.98846 1.13493 1.21253 0.91933 0.93217 0.95803 1.19688 0.82082 0.93133 0.96148 0.88634 1.22253 1.03707 1.01508 0.94331 1.55375 1.29221 1.33175 1.69149 0.99899 0.72865 0.71047 0.74084 1.93303 1.47012 1.80238 1.83337 1.93306 1.87790 1.47400 1.73983 1.30895 1.26897 1.32499 1.26922 0.86666 1.26021 0.95069 0.90800 1.02387 1.69996 1.23555 1.21062 1.37799 0.85107 0.78666 0.79793 0.75615 1.17196 1.18464 1.17842 1.22028 0.93626 1.00772 1.03277 0.89079 0.89533 0.90527 0.81672 0.80649 0.91971 0.88853 0.92311 0.74935 0.89049 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.06 71.24 0.72 -0.59 16 2 C -0.04 -0.84 5.92 -19.67 -0.12 -0.96 16 3 C -0.18 -3.25 9.82 22.36 0.22 -3.03 16 4 C 0.09 2.12 11.18 84.67 0.95 3.07 16 5 N -0.51 -16.16 9.15 -183.88 -1.68 -17.84 16 6 C 0.12 3.67 5.89 42.55 0.25 3.92 16 7 C 0.20 7.23 3.02 44.25 0.13 7.37 16 8 H 0.10 3.54 7.82 -2.39 -0.02 3.53 16 9 C -0.16 -5.08 9.50 71.98 0.68 -4.40 16 10 N -1.11 -48.67 5.41 -172.52 -0.93 -49.60 16 11 S 2.72 152.64 4.93 -56.49 -0.28 152.36 16 12 O -1.05 -66.13 18.02 -128.00 -2.31 -68.44 16 13 O -1.04 -62.44 17.28 -128.00 -2.21 -64.65 16 14 C -1.04 -58.75 9.58 67.73 0.65 -58.10 16 15 H 0.12 5.96 7.81 -2.91 -0.02 5.94 16 16 C 0.07 3.97 5.46 84.65 0.46 4.43 16 17 N -0.89 -54.13 13.19 21.45 0.28 -53.85 16 18 Si 0.99 41.84 29.54 68.60 2.03 43.87 16 19 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 22 C -0.18 -4.36 9.47 22.36 0.21 -4.15 16 23 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.09 0.75 8.10 -2.39 -0.02 0.73 16 25 H 0.08 0.86 8.10 -2.38 -0.02 0.84 16 26 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 27 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.06 2.14 7.64 -2.39 -0.02 2.13 16 31 H 0.42 17.31 7.97 -96.74 -0.77 16.54 16 32 H 0.30 16.19 8.31 -92.71 -0.77 15.42 16 33 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -80.15 303.09 -0.59 -80.75 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.35 Total: 29.87 kcal Atomic # 6 Polarization: -56.61 SS G_CDS: 4.16 Total: -52.45 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -2.33 Total: -121.29 kcal Atomic # 8 Polarization: -128.57 SS G_CDS: -4.52 Total: -133.09 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 152.64 SS G_CDS: -0.28 Total: 152.36 kcal Total: -80.15 -0.59 -80.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987374.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.216 kcal (2) G-P(sol) polarization free energy of solvation -80.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds