Wall clock time and date at job start Mon Mar 30 2020 01:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38665 * 120.42426 * 2 1 4 4 C 1.38633 * 118.42443 * 179.97438 * 3 2 1 5 5 C 1.38225 * 119.15790 * 0.02711 * 4 3 2 6 6 C 1.50697 * 119.61481 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.47173 * 324.99984 * 6 5 4 8 8 C 1.52998 * 109.47172 * 84.99990 * 6 5 4 9 9 N 1.46499 * 109.46995 * 205.00249 * 6 5 4 10 10 S 1.65600 * 120.00171 * 145.00370 * 9 6 5 11 11 O 1.42101 * 106.40350 * 178.53671 * 10 9 6 12 12 O 1.42103 * 106.40261 * 311.45399 * 10 9 6 13 13 C 1.76199 * 107.22303 * 64.99420 * 10 9 6 14 14 H 1.08008 * 119.99377 * 0.02562 * 13 10 9 15 15 C 1.37872 * 120.00147 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00144 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99919 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.46970 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46666 * 119.99985 * 17 15 13 20 20 H 1.48496 * 109.47135 * 240.00219 * 17 15 13 21 21 N 1.31852 * 120.76444 * 0.02562 * 5 4 3 22 22 C 1.31883 * 121.72922 * 359.97438 * 21 5 4 23 23 H 1.09001 * 109.46713 * 269.97919 * 1 2 3 24 24 H 1.09002 * 109.47257 * 29.96597 * 1 2 3 25 25 H 1.08994 * 109.47328 * 149.97540 * 1 2 3 26 26 H 1.08004 * 120.78413 * 359.97438 * 3 2 1 27 27 H 1.07995 * 120.41946 * 180.29699 * 4 3 2 28 28 H 1.08999 * 109.47390 * 60.00179 * 8 6 5 29 29 H 1.09008 * 109.47170 * 179.97438 * 8 6 5 30 30 H 1.09000 * 109.47291 * 299.99862 * 8 6 5 31 31 H 0.97003 * 120.00200 * 324.99496 * 9 6 5 32 32 H 0.97000 * 119.99510 * 180.02562 * 16 15 13 33 33 H 1.08001 * 119.61820 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5947 1.1473 0.0005 5 6 4.2256 -0.0825 0.0005 6 6 5.7312 -0.1471 0.0005 7 1 6.1303 0.6784 -0.5889 8 6 6.2461 -0.0434 1.4375 9 7 6.1654 -1.4187 -0.5833 10 16 7.5475 -1.4829 -1.4932 11 8 7.7107 -2.8406 -1.8798 12 8 7.4641 -0.4140 -2.4258 13 6 8.8950 -1.1051 -0.4226 14 1 8.7123 -0.8896 0.6199 15 6 10.1825 -1.0857 -0.9153 16 7 10.4049 -1.3487 -2.1846 17 14 11.6109 -0.6845 0.2197 18 1 11.0979 -0.4279 1.5894 19 1 12.5547 -1.8306 0.2517 20 1 12.3158 0.5234 -0.2797 21 7 3.5254 -1.1998 -0.0006 22 6 2.2066 -1.1917 -0.0011 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8903 -0.5133 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6890 2.1422 -0.0004 27 1 4.1736 2.0590 0.0054 28 1 5.8471 -0.8689 2.0269 29 1 7.3352 -0.0906 1.4375 30 1 5.9231 0.9026 1.8719 31 1 5.6433 -2.2230 -0.4369 32 1 11.3108 -1.3354 -2.5310 33 1 1.6671 -2.1274 -0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192993725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:55 Heat of formation + Delta-G solvation = -66.652110 kcal Electronic energy + Delta-G solvation = -18573.453401 eV Core-core repulsion = 15532.208761 eV Total energy + Delta-G solvation = -3041.244640 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30485 -36.00957 -35.04918 -33.86928 -33.08340 -33.01723 -31.84465 -29.07191 -27.08227 -26.02620 -23.77470 -22.78079 -20.82708 -18.95928 -17.51667 -16.88647 -16.35999 -15.88961 -15.12994 -14.79465 -14.54120 -14.38719 -13.98656 -13.44960 -13.35195 -13.12667 -13.02163 -12.63073 -12.37210 -12.10484 -11.95760 -11.63177 -11.20920 -11.17799 -10.70854 -10.51606 -10.26884 -10.21717 -10.10599 -9.74545 -9.36935 -9.21875 -8.98721 -8.65971 -8.43098 -6.65724 -5.27184 1.12774 1.33244 2.42955 3.08055 3.16603 3.23204 3.81962 4.09566 4.31157 4.67410 4.71248 4.75388 4.82046 4.96595 5.02110 5.37152 5.40120 5.48244 5.59590 5.64333 5.76415 5.82219 5.91117 5.99205 6.13819 6.19910 6.25313 6.54670 6.65456 6.76969 6.98525 7.38825 8.00159 8.06536 8.20765 8.93678 10.28477 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037372 B = 0.005080 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.053923 B = 5510.423568 C = 5837.473211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.153 4.153 3 C -0.075 4.075 4 C -0.163 4.163 5 C 0.134 3.866 6 C 0.206 3.794 7 H 0.106 0.894 8 C -0.170 4.170 9 N -1.123 6.123 10 S 2.714 3.286 11 O -1.007 7.007 12 O -1.010 7.010 13 C -1.021 5.021 14 H 0.107 0.893 15 C 0.133 3.867 16 N -0.845 5.845 17 Si 0.919 3.081 18 H -0.262 1.262 19 H -0.272 1.272 20 H -0.272 1.272 21 N -0.470 5.470 22 C 0.101 3.899 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.132 0.868 27 H 0.138 0.862 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.411 0.589 32 H 0.290 0.710 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.095 5.451 7.509 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.155 4.155 3 C -0.101 4.101 4 C -0.183 4.183 5 C -0.005 4.005 6 C 0.096 3.904 7 H 0.124 0.876 8 C -0.229 4.229 9 N -0.878 5.878 10 S 2.813 3.187 11 O -0.997 6.997 12 O -1.000 7.000 13 C -1.154 5.154 14 H 0.125 0.875 15 C -0.085 4.085 16 N -0.475 5.475 17 Si 0.743 3.257 18 H -0.186 1.186 19 H -0.197 1.197 20 H -0.197 1.197 21 N -0.179 5.179 22 C -0.056 4.056 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.244 0.756 32 H 0.100 0.900 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.408 4.578 6.365 16.403 hybrid contribution 0.301 0.829 1.187 1.479 sum -14.106 5.407 7.553 16.890 Atomic orbital electron populations 1.20672 0.90465 1.02916 1.02274 1.20893 0.97385 0.94429 1.02826 1.21417 0.93892 0.98031 0.96802 1.21949 0.95127 0.99174 1.02081 1.21557 0.96818 0.88491 0.93636 1.19460 0.86988 0.88467 0.95464 0.87599 1.22429 1.03657 1.01557 0.95278 1.55896 1.45052 1.14689 1.72147 1.00429 0.71917 0.72940 0.73367 1.93371 1.85840 1.37702 1.82782 1.93350 1.86875 1.57703 1.62076 1.30716 1.09226 1.63792 1.11642 0.87497 1.24748 0.99560 0.89145 0.95037 1.69918 1.24622 1.39593 1.13384 0.86153 0.80096 0.78680 0.80739 1.18590 1.19693 1.19683 1.67321 1.07881 1.31217 1.11447 1.22661 0.89765 0.97392 0.95803 0.91198 0.91559 0.91317 0.85006 0.84384 0.92168 0.89682 0.92231 0.75591 0.90012 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.04 36.01 0.36 -0.41 16 2 C -0.15 -1.66 5.90 -104.48 -0.62 -2.28 16 3 C -0.08 -0.83 9.86 -39.28 -0.39 -1.21 16 4 C -0.16 -2.12 9.77 -39.44 -0.39 -2.50 16 5 C 0.13 2.15 5.89 -82.59 -0.49 1.67 16 6 C 0.21 3.71 3.16 -69.09 -0.22 3.50 16 7 H 0.11 1.95 7.47 -51.93 -0.39 1.56 16 8 C -0.17 -2.67 9.50 37.16 0.35 -2.32 16 9 N -1.12 -23.89 5.41 -5.88 -0.03 -23.93 16 10 S 2.71 73.60 5.00 -107.50 -0.54 73.06 16 11 O -1.01 -30.47 18.02 -57.17 -1.03 -31.50 16 12 O -1.01 -29.92 17.36 -57.17 -0.99 -30.91 16 13 C -1.02 -27.83 9.57 30.60 0.29 -27.53 16 14 H 0.11 2.62 5.61 -52.48 -0.29 2.32 16 15 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 16 N -0.85 -25.01 13.19 55.43 0.73 -24.27 16 17 Si 0.92 20.46 29.54 -169.99 -5.02 15.44 16 18 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 21 N -0.47 -7.57 9.14 -9.47 -0.09 -7.65 16 22 C 0.10 1.30 10.86 -17.55 -0.19 1.11 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 25 H 0.07 0.45 8.09 -51.93 -0.42 0.02 16 26 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 27 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.45 5.74 -51.92 -0.30 1.15 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.41 8.26 7.97 -34.47 -0.27 7.98 16 32 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 298.87 15.07 4.50 4.50 Total: -1.00 -36.10 298.87 -7.61 -43.71 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.77 Total: 7.95 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -1.37 Total: -26.39 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.61 Total: -55.85 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -2.02 Total: -62.41 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 73.60 SS G_CDS: -0.54 Total: 73.06 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -36.10 -7.61 -43.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.946 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds