Wall clock time and date at job start Mon Mar 30 2020 01:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38665 * 120.42426 * 2 1 4 4 C 1.38633 * 118.42443 * 179.97438 * 3 2 1 5 5 C 1.38225 * 119.15790 * 0.02711 * 4 3 2 6 6 C 1.50697 * 119.61481 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.47173 * 324.99984 * 6 5 4 8 8 C 1.52998 * 109.47172 * 84.99990 * 6 5 4 9 9 N 1.46499 * 109.46995 * 205.00249 * 6 5 4 10 10 S 1.65600 * 120.00171 * 145.00370 * 9 6 5 11 11 O 1.42101 * 106.40350 * 178.53671 * 10 9 6 12 12 O 1.42103 * 106.40261 * 311.45399 * 10 9 6 13 13 C 1.76199 * 107.22303 * 64.99420 * 10 9 6 14 14 H 1.08008 * 119.99377 * 0.02562 * 13 10 9 15 15 C 1.37872 * 120.00147 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00144 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99919 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.46970 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46666 * 119.99985 * 17 15 13 20 20 H 1.48496 * 109.47135 * 240.00219 * 17 15 13 21 21 N 1.31852 * 120.76444 * 0.02562 * 5 4 3 22 22 C 1.31883 * 121.72922 * 359.97438 * 21 5 4 23 23 H 1.09001 * 109.46713 * 269.97919 * 1 2 3 24 24 H 1.09002 * 109.47257 * 29.96597 * 1 2 3 25 25 H 1.08994 * 109.47328 * 149.97540 * 1 2 3 26 26 H 1.08004 * 120.78413 * 359.97438 * 3 2 1 27 27 H 1.07995 * 120.41946 * 180.29699 * 4 3 2 28 28 H 1.08999 * 109.47390 * 60.00179 * 8 6 5 29 29 H 1.09008 * 109.47170 * 179.97438 * 8 6 5 30 30 H 1.09000 * 109.47291 * 299.99862 * 8 6 5 31 31 H 0.97003 * 120.00200 * 324.99496 * 9 6 5 32 32 H 0.97000 * 119.99510 * 180.02562 * 16 15 13 33 33 H 1.08001 * 119.61820 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5947 1.1473 0.0005 5 6 4.2256 -0.0825 0.0005 6 6 5.7312 -0.1471 0.0005 7 1 6.1303 0.6784 -0.5889 8 6 6.2461 -0.0434 1.4375 9 7 6.1654 -1.4187 -0.5833 10 16 7.5475 -1.4829 -1.4932 11 8 7.7107 -2.8406 -1.8798 12 8 7.4641 -0.4140 -2.4258 13 6 8.8950 -1.1051 -0.4226 14 1 8.7123 -0.8896 0.6199 15 6 10.1825 -1.0857 -0.9153 16 7 10.4049 -1.3487 -2.1846 17 14 11.6109 -0.6845 0.2197 18 1 11.0979 -0.4279 1.5894 19 1 12.5547 -1.8306 0.2517 20 1 12.3158 0.5234 -0.2797 21 7 3.5254 -1.1998 -0.0006 22 6 2.2066 -1.1917 -0.0011 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8903 -0.5133 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6890 2.1422 -0.0004 27 1 4.1736 2.0590 0.0054 28 1 5.8471 -0.8689 2.0269 29 1 7.3352 -0.0906 1.4375 30 1 5.9231 0.9026 1.8719 31 1 5.6433 -2.2230 -0.4369 32 1 11.3108 -1.3354 -2.5310 33 1 1.6671 -2.1274 -0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192993725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:55 Heat of formation + Delta-G solvation = -95.287615 kcal Electronic energy + Delta-G solvation = -18574.695130 eV Core-core repulsion = 15532.208761 eV Total energy + Delta-G solvation = -3042.486368 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31150 -37.57266 -37.09385 -36.13681 -35.17018 -34.03845 -32.88990 -30.47105 -28.36048 -27.76657 -24.79438 -23.83339 -21.98757 -20.99984 -19.38597 -18.56581 -17.80174 -17.37842 -16.74762 -16.11117 -15.94940 -15.88034 -15.43766 -15.22831 -14.50724 -14.26682 -13.99901 -13.95632 -13.73407 -13.33369 -13.20467 -13.00498 -12.78751 -12.62730 -12.52070 -12.49339 -12.32403 -12.24108 -11.88463 -11.24041 -10.98086 -10.68956 -10.45599 -10.17879 -9.62944 -8.72799 -7.45531 0.13212 0.38779 0.41267 1.36340 1.37218 1.55159 2.23522 2.60968 2.80534 2.95881 3.31367 3.70899 3.80736 3.97788 4.11546 4.13386 4.26980 4.34594 4.44577 4.53882 4.70646 4.77102 4.88071 4.89904 4.93060 5.15889 5.20939 5.25388 5.31722 5.41256 5.45957 5.84068 5.98729 6.40866 6.81297 7.11061 8.24438 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037372 B = 0.005080 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.053923 B = 5510.423568 C = 5837.473211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.142 4.142 3 C -0.075 4.075 4 C -0.166 4.166 5 C 0.102 3.898 6 C 0.196 3.804 7 H 0.094 0.906 8 C -0.164 4.164 9 N -1.112 6.112 10 S 2.715 3.285 11 O -1.049 7.049 12 O -1.046 7.046 13 C -1.033 5.033 14 H 0.131 0.869 15 C 0.069 3.931 16 N -0.897 5.897 17 Si 0.993 3.007 18 H -0.243 1.243 19 H -0.263 1.263 20 H -0.259 1.259 21 N -0.505 5.505 22 C 0.082 3.918 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.168 0.832 27 H 0.156 0.844 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.416 0.584 32 H 0.298 0.702 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.432 7.014 9.597 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.144 4.144 3 C -0.100 4.100 4 C -0.186 4.186 5 C -0.036 4.036 6 C 0.088 3.912 7 H 0.112 0.888 8 C -0.223 4.223 9 N -0.870 5.870 10 S 2.817 3.183 11 O -1.040 7.040 12 O -1.035 7.035 13 C -1.167 5.167 14 H 0.148 0.852 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.811 3.189 18 H -0.165 1.165 19 H -0.188 1.188 20 H -0.183 1.183 21 N -0.214 5.214 22 C -0.075 4.075 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.186 0.814 27 H 0.174 0.826 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.250 0.750 32 H 0.108 0.892 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.780 6.141 8.446 18.922 hybrid contribution 0.519 0.349 0.525 0.817 sum -15.261 6.490 8.971 18.855 Atomic orbital electron populations 1.20760 0.87586 1.04153 1.03585 1.21324 0.99374 0.93622 1.00112 1.21859 0.93085 0.99664 0.95416 1.22174 0.96451 0.98582 1.01419 1.21284 0.95460 0.89937 0.96958 1.19700 0.89257 0.86041 0.96216 0.88830 1.22366 1.02396 1.03519 0.94014 1.55331 1.43426 1.16500 1.71728 1.00007 0.72961 0.71597 0.73768 1.93300 1.86972 1.39613 1.84079 1.93293 1.87741 1.58408 1.64091 1.30997 1.09402 1.63612 1.12692 0.85151 1.26068 1.03117 0.88433 0.96756 1.70021 1.26001 1.41055 1.15760 0.85059 0.75849 0.79039 0.78925 1.16540 1.18767 1.18307 1.67183 1.09659 1.31891 1.12658 1.23106 0.88943 0.99334 0.96156 0.89648 0.90023 0.90463 0.81433 0.82637 0.91916 0.91297 0.88903 0.74969 0.89187 0.81086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.04 71.24 0.72 -0.40 16 2 C -0.14 -2.69 5.90 -19.77 -0.12 -2.81 16 3 C -0.07 -1.40 9.86 22.47 0.22 -1.18 16 4 C -0.17 -4.03 9.77 22.36 0.22 -3.81 16 5 C 0.10 3.24 5.89 42.55 0.25 3.49 16 6 C 0.20 7.15 3.16 44.24 0.14 7.29 16 7 H 0.09 3.55 7.47 -2.38 -0.02 3.54 16 8 C -0.16 -5.03 9.50 71.98 0.68 -4.34 16 9 N -1.11 -48.79 5.41 -172.52 -0.93 -49.73 16 10 S 2.72 152.83 5.00 -56.49 -0.28 152.54 16 11 O -1.05 -66.37 18.02 -128.00 -2.31 -68.68 16 12 O -1.05 -64.59 17.36 -128.00 -2.22 -66.81 16 13 C -1.03 -56.99 9.57 67.73 0.65 -56.34 16 14 H 0.13 6.34 5.61 -2.91 -0.02 6.32 16 15 C 0.07 3.84 5.46 84.65 0.46 4.30 16 16 N -0.90 -54.29 13.19 21.45 0.28 -54.01 16 17 Si 0.99 41.16 29.54 68.60 2.03 43.19 16 18 H -0.24 -9.20 7.11 99.48 0.71 -8.49 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 20 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 21 N -0.50 -16.14 9.14 -183.89 -1.68 -17.82 16 22 C 0.08 1.99 10.86 84.67 0.92 2.91 16 23 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.08 0.68 8.10 -2.39 -0.02 0.66 16 25 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 26 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 27 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 2.30 5.74 -2.38 -0.01 2.29 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.42 17.38 7.97 -96.74 -0.77 16.61 16 32 H 0.30 16.14 8.31 -92.71 -0.77 15.37 16 33 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -80.92 298.87 -0.61 -81.53 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.36 Total: 30.68 kcal Atomic # 6 Polarization: -55.04 SS G_CDS: 4.14 Total: -50.90 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -2.33 Total: -121.56 kcal Atomic # 8 Polarization: -130.96 SS G_CDS: -4.53 Total: -135.49 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: 152.83 SS G_CDS: -0.28 Total: 152.54 kcal Total: -80.92 -0.61 -81.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.760 kcal (2) G-P(sol) polarization free energy of solvation -80.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds