Wall clock time and date at job start Mon Mar 30 2020 01:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46965 * 2 1 4 4 H 1.08998 * 109.47218 * 305.19633 * 3 2 1 5 5 N 1.46505 * 109.47026 * 185.19856 * 3 2 1 6 6 S 1.65597 * 119.99826 * 96.38391 * 5 3 2 7 7 O 1.42108 * 106.40092 * 178.38649 * 6 5 3 8 8 O 1.42100 * 106.40454 * 311.30828 * 6 5 3 9 9 C 1.76197 * 107.21620 * 64.84896 * 6 5 3 10 10 H 1.07997 * 120.00238 * 359.97438 * 9 6 5 11 11 C 1.37883 * 119.99855 * 179.97438 * 9 6 5 12 12 N 1.31517 * 120.00171 * 0.02562 * 11 9 6 13 13 Si 1.86795 * 120.00040 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.47207 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47225 * 120.00218 * 13 11 9 16 16 H 1.48500 * 109.47111 * 240.00278 * 13 11 9 17 17 C 1.50697 * 109.47026 * 65.19927 * 3 2 1 18 18 C 1.38674 * 120.41885 * 259.99935 * 17 3 2 19 19 C 1.38622 * 118.41879 * 180.02562 * 18 17 3 20 20 C 1.38223 * 119.16653 * 0.02562 * 19 18 17 21 21 N 1.31858 * 120.76065 * 359.97438 * 20 19 18 22 22 C 1.31884 * 121.72437 * 359.70536 * 21 20 19 23 23 H 1.08999 * 109.47033 * 294.24991 * 1 2 3 24 24 H 1.08998 * 109.46886 * 174.24223 * 1 2 3 25 25 H 1.09006 * 109.46923 * 54.25165 * 1 2 3 26 26 H 1.08997 * 109.47259 * 119.99899 * 2 1 3 27 27 H 1.09008 * 109.47180 * 240.00363 * 2 1 3 28 28 H 0.96996 * 119.99456 * 276.38708 * 5 3 2 29 29 H 0.97001 * 120.00076 * 180.02562 * 12 11 9 30 30 H 1.08001 * 120.78821 * 359.97438 * 18 17 3 31 31 H 1.08001 * 120.41626 * 180.02562 * 19 18 17 32 32 H 1.07995 * 119.62170 * 179.97438 * 20 19 18 33 33 H 1.08001 * 119.61400 * 180.30824 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6026 1.9826 -0.8398 5 7 3.4997 1.4445 -0.1252 6 16 4.2030 1.6480 -1.6104 7 8 5.6075 1.6407 -1.3937 8 8 3.5479 0.7461 -2.4917 9 6 3.7934 3.2700 -2.1636 10 1 3.1843 3.9134 -1.5461 11 6 4.2506 3.7178 -3.3849 12 7 4.9920 2.9341 -4.1372 13 14 3.8158 5.4371 -3.9717 14 1 2.9769 6.1118 -2.9489 15 1 5.0612 6.2177 -4.1832 16 1 3.0641 5.3487 -5.2493 17 6 1.6455 2.1148 1.2898 18 6 0.5464 2.9593 1.3338 19 6 0.2211 3.5562 2.5419 20 6 0.9978 3.2922 3.6544 21 7 2.0363 2.4835 3.5755 22 6 2.3714 1.8935 2.4446 23 1 -0.3633 0.4221 0.9370 24 1 -0.3633 -1.0225 -0.1031 25 1 -0.3633 0.6004 -0.8341 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 4.0540 1.3265 0.6620 29 1 5.3139 3.2493 -4.9962 30 1 -0.0416 3.1480 0.4478 31 1 -0.6285 4.2191 2.6130 32 1 0.7513 3.7536 4.5992 33 1 3.2259 1.2335 2.4197 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192994023.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:55 Heat of formation + Delta-G solvation = -68.404992 kcal Electronic energy + Delta-G solvation = -18940.878481 eV Core-core repulsion = 15899.557831 eV Total energy + Delta-G solvation = -3041.320650 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25031 -36.58613 -35.16425 -33.97247 -33.13039 -32.33117 -31.55851 -30.60221 -26.17382 -25.56045 -23.59495 -22.86176 -20.54415 -19.09010 -17.65146 -17.14151 -16.37324 -16.07179 -15.62321 -14.84476 -14.73634 -14.38648 -14.05920 -13.76704 -13.45013 -13.26496 -12.97837 -12.36633 -12.09591 -11.91417 -11.80100 -11.35102 -11.26259 -11.11960 -10.72074 -10.61537 -10.37764 -10.28506 -10.18222 -9.72529 -9.38262 -9.28489 -9.10922 -8.88456 -8.57296 -6.73272 -5.35164 1.16131 1.33854 2.30605 3.02863 3.11604 3.18244 3.86356 4.03699 4.43491 4.60204 4.66114 4.82774 4.89302 5.05488 5.14127 5.26693 5.34435 5.52760 5.60650 5.66793 5.76019 5.88309 5.99431 6.13121 6.19049 6.29134 6.31782 6.43190 6.62859 6.71603 6.84712 7.29278 7.81203 7.94488 8.01853 8.86321 10.21022 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.006956 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.377444 B = 4024.247233 C = 4529.537688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.204 3.796 4 H 0.100 0.900 5 N -1.131 6.131 6 S 2.713 3.287 7 O -1.005 7.005 8 O -1.003 7.003 9 C -1.021 5.021 10 H 0.102 0.898 11 C 0.134 3.866 12 N -0.844 5.844 13 Si 0.919 3.081 14 H -0.263 1.263 15 H -0.271 1.271 16 H -0.271 1.271 17 C -0.123 4.123 18 C -0.068 4.068 19 C -0.172 4.172 20 C 0.086 3.914 21 N -0.484 5.484 22 C 0.106 3.894 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.401 0.599 29 H 0.291 0.709 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.550 0.099 10.222 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.095 3.905 4 H 0.118 0.882 5 N -0.884 5.884 6 S 2.813 3.187 7 O -0.996 6.996 8 O -0.992 6.992 9 C -1.154 5.154 10 H 0.120 0.880 11 C -0.084 4.084 12 N -0.474 5.474 13 Si 0.742 3.258 14 H -0.186 1.186 15 H -0.196 1.196 16 H -0.196 1.196 17 C -0.126 4.126 18 C -0.095 4.095 19 C -0.192 4.192 20 C -0.071 4.071 21 N -0.193 5.193 22 C -0.051 4.051 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.232 0.768 29 H 0.101 0.899 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.169 0.831 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.518 -0.754 10.197 13.969 hybrid contribution -0.745 1.711 -0.675 1.985 sum -10.263 0.957 9.522 14.032 Atomic orbital electron populations 1.21755 0.95639 1.01780 1.01595 1.22087 0.95928 0.96174 1.03597 1.19503 0.81322 0.95400 0.94264 0.88172 1.56225 1.12315 1.91449 1.28408 1.00502 0.72130 0.76191 0.69855 1.93382 1.32050 1.89475 1.84663 1.93365 1.76561 1.66624 1.62693 1.30577 1.46969 1.24456 1.13429 0.88002 1.24733 0.90255 0.99373 0.94085 1.69901 1.28394 1.37110 1.11987 0.86160 0.79171 0.81401 0.79024 1.18642 1.19578 1.19558 1.21165 0.96257 0.97955 0.97230 1.21532 0.95651 0.93918 0.98353 1.22094 1.01648 1.01539 0.93887 1.22705 0.91050 0.94906 0.98423 1.67684 1.15707 1.07947 1.27921 1.22525 0.98349 0.96822 0.87415 0.93112 0.92612 0.92247 0.91840 0.89408 0.76766 0.89907 0.84530 0.84930 0.83118 0.82940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.50 37.16 0.35 -1.46 16 2 C -0.14 -2.04 5.71 -26.73 -0.15 -2.19 16 3 C 0.20 3.35 2.47 -69.08 -0.17 3.18 16 4 H 0.10 1.72 7.73 -51.93 -0.40 1.32 16 5 N -1.13 -21.63 5.42 -5.88 -0.03 -21.66 16 6 S 2.71 69.93 4.92 -107.50 -0.53 69.40 16 7 O -1.01 -29.14 18.02 -57.17 -1.03 -30.17 16 8 O -1.00 -28.01 17.38 -57.17 -0.99 -29.00 16 9 C -1.02 -27.51 9.58 30.60 0.29 -27.22 16 10 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16 11 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 12 N -0.84 -24.56 13.19 55.43 0.73 -23.83 16 13 Si 0.92 20.34 29.54 -169.99 -5.02 15.32 16 14 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 17 C -0.12 -1.77 4.25 -104.48 -0.44 -2.21 16 18 C -0.07 -0.85 9.12 -39.28 -0.36 -1.21 16 19 C -0.17 -1.88 10.11 -39.45 -0.40 -2.27 16 20 C 0.09 1.02 11.18 -17.55 -0.20 0.82 16 21 N -0.48 -6.91 10.36 -13.25 -0.14 -7.05 16 22 C 0.11 1.52 10.34 -17.55 -0.18 1.34 16 23 H 0.05 0.57 7.14 -51.93 -0.37 0.20 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 1.48 7.74 -51.92 -0.40 1.08 16 28 H 0.40 6.70 7.15 -34.47 -0.25 6.45 16 29 H 0.29 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.15 1.99 6.84 -52.49 -0.36 1.63 16 LS Contribution 299.19 15.07 4.51 4.51 Total: -1.00 -34.89 299.19 -7.72 -42.61 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.86 Total: 7.52 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -1.35 Total: -27.64 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.56 Total: -52.54 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -2.02 Total: -59.17 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 69.93 SS G_CDS: -0.53 Total: 69.40 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.89 -7.72 -42.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994023.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.793 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds